RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 MCM2P49736 904 aa16.19■□□□□ 0.18
USP42-206ENST00000479544 MCM10Q7L590 875 aa16.19■□□□□ 0.18
USP42-206ENST00000479544 RUFY2Q8WXA3 655 aa16.19■□□□□ 0.18
USP42-206ENST00000479544 PPP6R1Q9UPN7 881 aa16.19■□□□□ 0.18
USP42-206ENST00000479544 DYNC1I1O14576 645 aa16.19■□□□□ 0.18
USP42-206ENST00000479544 PRAG1Q86YV5 1406 aa16.18■□□□□ 0.18
USP42-206ENST00000479544 CCDC83Q8IWF9 413 aa16.18■□□□□ 0.18
USP42-206ENST00000479544 ANTXR1Q9H6X2 564 aa16.18■□□□□ 0.18
USP42-206ENST00000479544 ZBTB9Q96C00 473 aa16.18■□□□□ 0.18
USP42-206ENST00000479544 LARP1BQ659C4 914 aaKnown RBP16.18■□□□□ 0.18
USP42-206ENST00000479544 LRRCC1Q9C099 1032 aa16.18■□□□□ 0.18
USP42-206ENST00000479544 TNMDQ9H2S6 317 aa16.18■□□□□ 0.18
USP42-206ENST00000479544 GNAI2P04899 355 aa16.17■□□□□ 0.18
USP42-206ENST00000479544 SDSP20132 328 aa16.17■□□□□ 0.18
USP42-206ENST00000479544 PKP1Q13835 747 aa16.17■□□□□ 0.18
USP42-206ENST00000479544 LRSAM1Q6UWE0 723 aa16.17■□□□□ 0.18
USP42-206ENST00000479544 TMX3Q96JJ7 454 aa16.17■□□□□ 0.18
USP42-206ENST00000479544 ERBB4Q15303 1308 aa16.17■□□□□ 0.18
USP42-206ENST00000479544 ARHGEF40Q8TER5 1519 aa16.17■□□□□ 0.18
USP42-206ENST00000479544 MNS1Q8NEH6 495 aa16.17■□□□□ 0.18
USP42-206ENST00000479544 SNX21Q969T3 373 aa16.17■□□□□ 0.18
USP42-206ENST00000479544 PPFIA3O75145 1194 aa16.16■□□□□ 0.18
USP42-206ENST00000479544 TSPYL6Q8N831 410 aa16.16■□□□□ 0.18
USP42-206ENST00000479544 OTUD7AQ8TE49 926 aaPredicted RBP16.16■□□□□ 0.18
USP42-206ENST00000479544 TRMT1Q9NXH9 659 aaKnown RBP16.16■□□□□ 0.18
USP42-206ENST00000479544 NOLC1Q14978 699 aaKnown RBP eCLIP16.16■□□□□ 0.18
USP42-206ENST00000479544 TFIP11Q9UBB9 837 aaKnown RBP16.16■□□□□ 0.18
USP42-206ENST00000479544 AIMP1Q12904 312 aaKnown RBP16.16■□□□□ 0.18
USP42-206ENST00000479544 CCDC73Q6ZRK6 1079 aa16.16■□□□□ 0.18
USP42-206ENST00000479544 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.16■□□□□ 0.18
USP42-206ENST00000479544 USP19O94966 1318 aa16.15■□□□□ 0.18
USP42-206ENST00000479544 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.15■□□□□ 0.18
USP42-206ENST00000479544 EMILIN1Q9Y6C2 1016 aa16.15■□□□□ 0.18
USP42-206ENST00000479544 V9GYY5 206 aaPredicted RBP16.15■□□□□ 0.18
USP42-206ENST00000479544 JAKMIP1Q96N16 626 aaKnown RBP16.15■□□□□ 0.18
USP42-206ENST00000479544 ZBTB40Q9NUA8 1239 aa16.15■□□□□ 0.18
USP42-206ENST00000479544 FSD2A1L4K1 749 aa16.15■□□□□ 0.18
USP42-206ENST00000479544 TOM1O60784 492 aa16.15■□□□□ 0.18
USP42-206ENST00000479544 CD2BP2O95400 341 aaKnown RBP16.15■□□□□ 0.18
USP42-206ENST00000479544 STK11IPQ8N1F8 1099 aa16.15■□□□□ 0.18
USP42-206ENST00000479544 SMC2O95347 1197 aa16.14■□□□□ 0.17
USP42-206ENST00000479544 NFE2L2Q16236 605 aa16.14■□□□□ 0.17
USP42-206ENST00000479544 THEMISQ8N1K5 641 aaPredicted RBP16.14■□□□□ 0.17
USP42-206ENST00000479544 PES1O00541 588 aaKnown RBP16.14■□□□□ 0.17
USP42-206ENST00000479544 CDK19Q9BWU1 502 aa16.14■□□□□ 0.17
USP42-206ENST00000479544 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.14■□□□□ 0.17
USP42-206ENST00000479544 CASTP20810 708 aaKnown RBP16.14■□□□□ 0.17
USP42-206ENST00000479544 FCHSD2O94868 740 aa16.13■□□□□ 0.17
USP42-206ENST00000479544 KRT24Q2M2I5 525 aa16.13■□□□□ 0.17
USP42-206ENST00000479544 ANKLE2Q86XL3 938 aa16.13■□□□□ 0.17
USP42-206ENST00000479544 RPAP2Q8IXW5 612 aaPredicted RBP16.13■□□□□ 0.17
USP42-206ENST00000479544 DDX11Q96FC9 970 aa16.13■□□□□ 0.17
USP42-206ENST00000479544 TOMM22Q9NS69 142 aa16.13■□□□□ 0.17
USP42-206ENST00000479544 SPG7Q9UQ90 795 aa16.13■□□□□ 0.17
USP42-206ENST00000479544 TTLL5Q6EMB2 1281 aa16.13■□□□□ 0.17
USP42-206ENST00000479544 NUP62CLQ9H1M0 184 aa16.13■□□□□ 0.17
USP42-206ENST00000479544 ATAD2Q6PL18 1390 aa16.13■□□□□ 0.17
USP42-206ENST00000479544 LMTK3Q96Q04 1460 aa16.13■□□□□ 0.17
USP42-206ENST00000479544 MADDQ8WXG6 1647 aa16.13■□□□□ 0.17
USP42-206ENST00000479544 RIMS1Q86UR5 1692 aaKnown RBP16.12■□□□□ 0.17
USP42-206ENST00000479544 LETM1O95202 739 aaPredicted RBP16.12■□□□□ 0.17
USP42-206ENST00000479544 KRT85P78386 507 aa16.12■□□□□ 0.17
USP42-206ENST00000479544 TTC22Q5TAA0 569 aa16.12■□□□□ 0.17
USP42-206ENST00000479544 CNTROBQ8N137 903 aa16.12■□□□□ 0.17
USP42-206ENST00000479544 CLASRPQ8N2M8 674 aaKnown RBP16.12■□□□□ 0.17
USP42-206ENST00000479544 GNAI3P08754 354 aa16.12■□□□□ 0.17
USP42-206ENST00000479544 TEFQ10587 303 aa16.12■□□□□ 0.17
USP42-206ENST00000479544 CNPY2Q9Y2B0 182 aa16.12■□□□□ 0.17
USP42-206ENST00000479544 TRAPPC8Q9Y2L5 1435 aa16.12■□□□□ 0.17
USP42-206ENST00000479544 USP48Q86UV5 1035 aa16.11■□□□□ 0.17
USP42-206ENST00000479544 MEIS3Q99687 375 aa16.11■□□□□ 0.17
USP42-206ENST00000479544 TNNT1P13805 278 aa16.11■□□□□ 0.17
USP42-206ENST00000479544 CCDC183Q5T5S1 534 aa16.11■□□□□ 0.17
USP42-206ENST00000479544 PDILTQ8N807 584 aa16.11■□□□□ 0.17
USP42-206ENST00000479544 FSD1Q9BTV5 496 aa16.11■□□□□ 0.17
USP42-206ENST00000479544 SIL1Q9H173 461 aa16.11■□□□□ 0.17
USP42-206ENST00000479544 EID1Q9Y6B2 187 aa16.11■□□□□ 0.17
USP42-206ENST00000479544 SCAF11Q99590 1463 aaKnown RBP16.11■□□□□ 0.17
USP42-206ENST00000479544 PIP4K2BP78356 416 aa16.11■□□□□ 0.17
USP42-206ENST00000479544 TEX35Q5T0J7 233 aa16.11■□□□□ 0.17
USP42-206ENST00000479544 MX1P20591 662 aa16.1■□□□□ 0.17
USP42-206ENST00000479544 TCEANC2Q96MN5 208 aa16.1■□□□□ 0.17
USP42-206ENST00000479544 CYP46A1Q9Y6A2 500 aa16.1■□□□□ 0.17
USP42-206ENST00000479544 SRGAP3O43295 1099 aa16.1■□□□□ 0.17
USP42-206ENST00000479544 G3BP1Q13283 466 aaKnown RBP eCLIP16.1■□□□□ 0.17
USP42-206ENST00000479544 RNF20Q5VTR2 975 aa16.1■□□□□ 0.17
USP42-206ENST00000479544 MBIPQ9NS73 344 aa16.1■□□□□ 0.17
USP42-206ENST00000479544 NOL7Q9UMY1 257 aaKnown RBP16.1■□□□□ 0.17
USP42-206ENST00000479544 CCDC66A2RUB6 948 aa16.1■□□□□ 0.17
USP42-206ENST00000479544 GOLGA6L1Q8N7Z2 621 aa16.1■□□□□ 0.17
USP42-206ENST00000479544 SPATA32Q96LK8 384 aa16.1■□□□□ 0.17
USP42-206ENST00000479544 KINO60870 393 aaKnown RBP16.09■□□□□ 0.17
USP42-206ENST00000479544 ALDH1L2Q3SY69 923 aa16.09■□□□□ 0.17
USP42-206ENST00000479544 TPM3P06753 285 aa16.09■□□□□ 0.17
USP42-206ENST00000479544 C8orf58Q8NAV2 365 aa16.09■□□□□ 0.17
USP42-206ENST00000479544 BBXQ8WY36 941 aaPredicted RBP16.09■□□□□ 0.17
USP42-206ENST00000479544 RBM25P49756 843 aaKnown RBP16.09■□□□□ 0.17
USP42-206ENST00000479544 MAP3K11Q16584 847 aa16.09■□□□□ 0.17
USP42-206ENST00000479544 TXNDC2Q86VQ3 553 aa16.09■□□□□ 0.17
USP42-206ENST00000479544 TMEM63CQ9P1W3 806 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms