RNA–Protein interactions for RNA: ENST00000479440.1

DDX56-210, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-210ENST00000479440 PRIM1P49642 420 aaKnown RBP22.84■■□□□ 1.25
DDX56-210ENST00000479440 NEUROD1Q13562 356 aa22.84■■□□□ 1.25
DDX56-210ENST00000479440 CARD11Q9BXL7 1154 aa22.84■■□□□ 1.25
DDX56-210ENST00000479440 CCNL1Q9UK58 526 aaPredicted RBP22.84■■□□□ 1.25
DDX56-210ENST00000479440 KAT6BQ8WYB5 2073 aa22.84■■□□□ 1.25
DDX56-210ENST00000479440 KCNQ4P56696 695 aa22.83■■□□□ 1.25
DDX56-210ENST00000479440 IFFO2Q5TF58 517 aa22.83■■□□□ 1.25
DDX56-210ENST00000479440 SLC12A5Q9H2X9 1139 aa22.83■■□□□ 1.25
DDX56-210ENST00000479440 USP47Q96K76 1375 aa22.82■■□□□ 1.24
DDX56-210ENST00000479440 MSH5O43196 834 aa22.82■■□□□ 1.24
DDX56-210ENST00000479440 MEGF6O75095 1541 aa22.81■■□□□ 1.24
DDX56-210ENST00000479440 YBX3P16989 372 aaKnown RBP eCLIP22.8■■□□□ 1.24
DDX56-210ENST00000479440 PUS7Q96PZ0 661 aaKnown RBP22.8■■□□□ 1.24
DDX56-210ENST00000479440 RTL1A6NKG5 1358 aa22.79■■□□□ 1.24
DDX56-210ENST00000479440 HOXC9P31274 260 aa22.79■■□□□ 1.24
DDX56-210ENST00000479440 ZCRB1Q8TBF4 217 aaKnown RBP22.79■■□□□ 1.24
DDX56-210ENST00000479440 COG3Q96JB2 828 aa22.79■■□□□ 1.24
DDX56-210ENST00000479440 MAP3K19Q56UN5 1328 aa22.79■■□□□ 1.24
DDX56-210ENST00000479440 HMGB2P26583 209 aaKnown RBP22.78■■□□□ 1.24
DDX56-210ENST00000479440 AMPHP49418 695 aa22.78■■□□□ 1.24
DDX56-210ENST00000479440 ATP10DQ9P241 1426 aa22.78■■□□□ 1.24
DDX56-210ENST00000479440 C5P01031 1676 aa22.77■■□□□ 1.24
DDX56-210ENST00000479440 SMG6Q86US8 1419 aaKnown RBP22.76■■□□□ 1.23
DDX56-210ENST00000479440 COL23A1Q86Y22 540 aaPredicted RBP22.76■■□□□ 1.23
DDX56-210ENST00000479440 CGNL1Q0VF96 1302 aa22.76■■□□□ 1.23
DDX56-210ENST00000479440 MSL1Q68DK7 614 aa22.74■■□□□ 1.23
DDX56-210ENST00000479440 GOLGB1Q14789 3259 aaKnown RBP22.73■■□□□ 1.23
DDX56-210ENST00000479440 FLAD1Q8NFF5 587 aa22.73■■□□□ 1.23
DDX56-210ENST00000479440 CD2APQ9Y5K6 639 aa22.73■■□□□ 1.23
DDX56-210ENST00000479440 RGPD2P0DJD1 1756 aa22.73■■□□□ 1.23
DDX56-210ENST00000479440 GPBP1L1Q9HC44 474 aaPredicted RBP22.72■■□□□ 1.23
DDX56-210ENST00000479440 RAPGEF4Q8WZA2 1011 aa22.71■■□□□ 1.23
DDX56-210ENST00000479440 ADCY9O60503 1353 aa22.71■■□□□ 1.23
DDX56-210ENST00000479440 PALLDQ8WX93 1383 aa22.7■■□□□ 1.22
DDX56-210ENST00000479440 PCDH11XQ9BZA7 1347 aa22.69■■□□□ 1.22
DDX56-210ENST00000479440 PCDH11YQ9BZA8 1340 aa22.69■■□□□ 1.22
DDX56-210ENST00000479440 NSD3Q9BZ95 1437 aa22.68■■□□□ 1.22
DDX56-210ENST00000479440 TATP17735 454 aaPredicted RBP22.67■■□□□ 1.22
DDX56-210ENST00000479440 C4BP0C0L5 1744 aa22.66■■□□□ 1.22
DDX56-210ENST00000479440 SLC24A1O60721 1099 aa22.66■■□□□ 1.22
DDX56-210ENST00000479440 NBPF6Q5VWK0 638 aa22.66■■□□□ 1.22
DDX56-210ENST00000479440 NBPF4Q96M43 638 aa22.66■■□□□ 1.22
DDX56-210ENST00000479440 TAF1LQ8IZX4 1826 aa22.66■■□□□ 1.22
DDX56-210ENST00000479440 TONSLQ96HA7 1378 aa22.65■■□□□ 1.22
DDX56-210ENST00000479440 USHBP1Q8N6Y0 703 aa22.65■■□□□ 1.22
DDX56-210ENST00000479440 AK7Q96M32 723 aa22.65■■□□□ 1.22
DDX56-210ENST00000479440 HSPA6P17066 643 aa22.64■■□□□ 1.21
DDX56-210ENST00000479440 FBLN1P23142 703 aa22.64■■□□□ 1.21
DDX56-210ENST00000479440 RRS1Q15050 365 aaKnown RBP22.64■■□□□ 1.21
DDX56-210ENST00000479440 ZNF526Q8TF50 670 aaPredicted RBP22.62■■□□□ 1.21
DDX56-210ENST00000479440 SMARCC1Q92922 1105 aaPredicted RBP22.62■■□□□ 1.21
DDX56-210ENST00000479440 IGSF1Q8N6C5 1336 aa22.61■■□□□ 1.21
DDX56-210ENST00000479440 MPRIPQ6WCQ1 1025 aa22.61■■□□□ 1.21
DDX56-210ENST00000479440 TESK2Q96S53 571 aa22.61■■□□□ 1.21
DDX56-210ENST00000479440 TOGARAM1Q9Y4F4 1720 aa22.61■■□□□ 1.21
DDX56-210ENST00000479440 INSRP06213 1382 aa22.61■■□□□ 1.21
DDX56-210ENST00000479440 FLT4P35916 1363 aa22.61■■□□□ 1.21
DDX56-210ENST00000479440 KIF24Q5T7B8 1368 aa22.61■■□□□ 1.21
DDX56-210ENST00000479440 CEP350Q5VT06 3117 aa22.59■■□□□ 1.21
DDX56-210ENST00000479440 PKD1L3Q7Z443 1732 aa22.58■■□□□ 1.21
DDX56-210ENST00000479440 ST20-MTHFSA0A0A6YYL1 179 aa22.58■■□□□ 1.21
DDX56-210ENST00000479440 PHF14O94880 888 aa22.58■■□□□ 1.21
DDX56-210ENST00000479440 GGNBP2Q9H3C7 697 aa22.58■■□□□ 1.21
DDX56-210ENST00000479440 UBR3Q6ZT12 1888 aa22.58■■□□□ 1.2
DDX56-210ENST00000479440 CICQ96RK0 1608 aaPredicted RBP22.57■■□□□ 1.2
DDX56-210ENST00000479440 KIF20BQ96Q89 1820 aa22.57■■□□□ 1.2
DDX56-210ENST00000479440 SSFA2P28290 1259 aa22.56■■□□□ 1.2
DDX56-210ENST00000479440 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.55■■□□□ 1.2
DDX56-210ENST00000479440 FYB1O15117 783 aa22.55■■□□□ 1.2
DDX56-210ENST00000479440 CYP27B1O15528 508 aa22.55■■□□□ 1.2
DDX56-210ENST00000479440 ITGB4P16144 1822 aa22.54■■□□□ 1.2
DDX56-210ENST00000479440 HSP90AB2PQ58FF8 381 aa22.54■■□□□ 1.2
DDX56-210ENST00000479440 WWC3Q9ULE0 1092 aa22.53■■□□□ 1.2
DDX56-210ENST00000479440 NCAPD2Q15021 1401 aa22.51■■□□□ 1.19
DDX56-210ENST00000479440 TMF1P82094 1093 aa22.51■■□□□ 1.19
DDX56-210ENST00000479440 AMIGO3Q86WK7 504 aa22.51■■□□□ 1.19
DDX56-210ENST00000479440 PIGBQ92521 554 aa22.5■■□□□ 1.19
DDX56-210ENST00000479440 LOC102724428A0A0B4J2F2 783 aa22.49■■□□□ 1.19
DDX56-210ENST00000479440 KIF3CO14782 793 aa22.49■■□□□ 1.19
DDX56-210ENST00000479440 SIK1P57059 783 aa22.49■■□□□ 1.19
DDX56-210ENST00000479440 SPG7Q9UQ90 795 aa22.49■■□□□ 1.19
DDX56-210ENST00000479440 MAP2P11137 1827 aaKnown RBP22.49■■□□□ 1.19
DDX56-210ENST00000479440 NKX1-1Q15270 411 aaPredicted RBP22.48■■□□□ 1.19
DDX56-210ENST00000479440 LINC00116Q8NCU8 138 aa22.48■■□□□ 1.19
DDX56-210ENST00000479440 GNPATO15228 680 aa22.47■■□□□ 1.19
DDX56-210ENST00000479440 TMOD3Q9NYL9 352 aa22.47■■□□□ 1.19
DDX56-210ENST00000479440 PXDNLA1KZ92 1463 aa22.47■■□□□ 1.19
DDX56-210ENST00000479440 APLP1P51693 650 aa22.46■■□□□ 1.19
DDX56-210ENST00000479440 SMIM5Q71RC9 77 aa22.46■■□□□ 1.19
DDX56-210ENST00000479440 ANKRD26Q9UPS8 1709 aa22.45■■□□□ 1.19
DDX56-210ENST00000479440 KIF13BQ9NQT8 1826 aa22.45■■□□□ 1.18
DDX56-210ENST00000479440 CDCA8Q53HL2 280 aa22.44■■□□□ 1.18
DDX56-210ENST00000479440 MMP10P09238 476 aa22.43■■□□□ 1.18
DDX56-210ENST00000479440 EMILIN1Q9Y6C2 1016 aa22.43■■□□□ 1.18
DDX56-210ENST00000479440 C10orf71Q711Q0 1435 aa22.42■■□□□ 1.18
DDX56-210ENST00000479440 ATP6V1AP38606 617 aa22.42■■□□□ 1.18
DDX56-210ENST00000479440 TGFB2P61812 414 aa22.42■■□□□ 1.18
DDX56-210ENST00000479440 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.42■■□□□ 1.18
DDX56-210ENST00000479440 KIAA1551Q9HCM1 1747 aa22.42■■□□□ 1.18
DDX56-210ENST00000479440 ITPK1Q13572 414 aa22.41■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 261.7 ms