RNA–Protein interactions for RNA: ENST00000479197.1

RFK-204, Transcript of riboflavin kinase, human

TSL 1 (best)

Gene RFK, Length 1,501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFK-204	ENST00000479197	AEBP1	Q8IUX7	1158 aa		24.15	■■□□□ 1.46
RFK-204	ENST00000479197	U2SURP	O15042	1029 aa	Known RBP	24.14	■■□□□ 1.45
RFK-204	ENST00000479197	ANP32C	O43423	234 aa		24.14	■■□□□ 1.45
RFK-204	ENST00000479197	ZCRB1	Q8TBF4	217 aa	Known RBP	24.14	■■□□□ 1.45
RFK-204	ENST00000479197	NUDC	Q9Y266	331 aa		24.14	■■□□□ 1.45
RFK-204	ENST00000479197	PLEKHG2	Q9H7P9	1386 aa		24.13	■■□□□ 1.45
RFK-204	ENST00000479197	MARCH10	Q8NA82	808 aa	Predicted RBP	24.13	■■□□□ 1.45
RFK-204	ENST00000479197	FAM196A	Q6ZSG2	479 aa		24.11	■■□□□ 1.45
RFK-204	ENST00000479197	HMOX1	P09601	288 aa		24.1	■■□□□ 1.45
RFK-204	ENST00000479197	SOCS7	O14512	581 aa		24.1	■■□□□ 1.45
RFK-204	ENST00000479197	PCDH11X	Q9BZA7	1347 aa		24.09	■■□□□ 1.45
RFK-204	ENST00000479197	PCDH11Y	Q9BZA8	1340 aa		24.09	■■□□□ 1.45
RFK-204	ENST00000479197	DDX54	Q8TDD1	881 aa	Known RBP	24.09	■■□□□ 1.45
RFK-204	ENST00000479197	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	24.09	■■□□□ 1.45
RFK-204	ENST00000479197	SBF2	Q86WG5	1849 aa		24.08	■■□□□ 1.45
RFK-204	ENST00000479197	BCL9	O00512	1426 aa		24.08	■■□□□ 1.45
RFK-204	ENST00000479197	SPG7	Q9UQ90	795 aa		24.08	■■□□□ 1.45
RFK-204	ENST00000479197	U2AF1L5	P0DN76	240 aa	Predicted RBP	24.06	■■□□□ 1.44
RFK-204	ENST00000479197	U2AF1	Q01081	240 aa	Known RBP eCLIP	24.06	■■□□□ 1.44
RFK-204	ENST00000479197	UPF1	Q92900	1129 aa	Known RBP eCLIP	24.05	■■□□□ 1.44
RFK-204	ENST00000479197	PLEKHO1	Q53GL0	409 aa	Predicted RBP	24.05	■■□□□ 1.44
RFK-204	ENST00000479197	AMOT	Q4VCS5	1084 aa		24.04	■■□□□ 1.44
RFK-204	ENST00000479197	CYP27B1	O15528	508 aa		24.03	■■□□□ 1.44
RFK-204	ENST00000479197	KAT6B	Q8WYB5	2073 aa		24.02	■■□□□ 1.44
RFK-204	ENST00000479197	RSPH6A	Q9H0K4	717 aa		24.02	■■□□□ 1.44
RFK-204	ENST00000479197	TNS1	Q9HBL0	1735 aa	Known RBP	24.02	■■□□□ 1.44
RFK-204	ENST00000479197	DOT1L	Q8TEK3	1739 aa		24.01	■■□□□ 1.43
RFK-204	ENST00000479197	NHS	Q6T4R5	1651 aa		24.01	■■□□□ 1.43
RFK-204	ENST00000479197	FCHSD2	O94868	740 aa		24	■■□□□ 1.43
RFK-204	ENST00000479197	CCDC125	Q86Z20	511 aa		24	■■□□□ 1.43
RFK-204	ENST00000479197	TRIM37	O94972	964 aa		24	■■□□□ 1.43
RFK-204	ENST00000479197	PRKAR2B	P31323	418 aa		24	■■□□□ 1.43
RFK-204	ENST00000479197	IFNL2	Q8IZJ0	200 aa		24	■■□□□ 1.43
RFK-204	ENST00000479197	PHKG2	P15735	406 aa		23.99	■■□□□ 1.43
RFK-204	ENST00000479197	ZNF530	Q6P9A1	599 aa	Predicted RBP	23.99	■■□□□ 1.43
RFK-204	ENST00000479197	SF3B2	Q13435	895 aa	Known RBP	23.97	■■□□□ 1.43
RFK-204	ENST00000479197	TOGARAM1	Q9Y4F4	1720 aa		23.96	■■□□□ 1.43
RFK-204	ENST00000479197	WDR43	Q15061	677 aa	Known RBP eCLIP	23.96	■■□□□ 1.43
RFK-204	ENST00000479197	NKX1-1	Q15270	411 aa	Predicted RBP	23.96	■■□□□ 1.43
RFK-204	ENST00000479197	ACSBG1	Q96GR2	724 aa		23.96	■■□□□ 1.43
RFK-204	ENST00000479197	CCDC184	Q52MB2	194 aa		23.95	■■□□□ 1.43
RFK-204	ENST00000479197	C1orf141	Q5JVX7	400 aa		23.95	■■□□□ 1.43
RFK-204	ENST00000479197	MTHFSD	Q2M296	383 aa	Known RBP	23.94	■■□□□ 1.42
RFK-204	ENST00000479197	DIEXF	Q68CQ4	756 aa	Known RBP	23.94	■■□□□ 1.42
RFK-204	ENST00000479197	BCL11B	Q9C0K0	894 aa	Predicted RBP	23.94	■■□□□ 1.42
RFK-204	ENST00000479197	PHACTR3	Q96KR7	559 aa		23.94	■■□□□ 1.42
RFK-204	ENST00000479197	KCNQ2	O43526	872 aa		23.93	■■□□□ 1.42
RFK-204	ENST00000479197	HSP90AB1	P08238	724 aa	Known RBP	23.93	■■□□□ 1.42
RFK-204	ENST00000479197	GAS2L2	Q8NHY3	880 aa		23.93	■■□□□ 1.42
RFK-204	ENST00000479197	PNN	Q9H307	717 aa	Known RBP	23.93	■■□□□ 1.42
RFK-204	ENST00000479197	ITGB4	P16144	1822 aa		23.92	■■□□□ 1.42
RFK-204	ENST00000479197	AKAP4	Q5JQC9	854 aa		23.92	■■□□□ 1.42
RFK-204	ENST00000479197	PTF1A	Q7RTS3	328 aa		23.92	■■□□□ 1.42
RFK-204	ENST00000479197	MRS2	Q9HD23	443 aa		23.92	■■□□□ 1.42
RFK-204	ENST00000479197	BTAF1	O14981	1849 aa		23.92	■■□□□ 1.42
RFK-204	ENST00000479197	VIRMA	Q69YN4	1812 aa	Known RBP	23.92	■■□□□ 1.42
RFK-204	ENST00000479197	NEFM	P07197	916 aa		23.9	■■□□□ 1.42
RFK-204	ENST00000479197	PRIM1	P49642	420 aa	Known RBP	23.9	■■□□□ 1.42
RFK-204	ENST00000479197	SYTL4	Q96C24	671 aa	Predicted RBP	23.9	■■□□□ 1.42
RFK-204	ENST00000479197	DCAF5	Q96JK2	942 aa		23.9	■■□□□ 1.42
RFK-204	ENST00000479197	PLEKHF1	Q96S99	279 aa		23.9	■■□□□ 1.42
RFK-204	ENST00000479197	SCN11A	Q9UI33	1791 aa		23.9	■■□□□ 1.42
RFK-204	ENST00000479197	APBA3	O96018	575 aa		23.89	■■□□□ 1.42
RFK-204	ENST00000479197	BAG6	P46379	1132 aa		23.89	■■□□□ 1.42
RFK-204	ENST00000479197	KDM6A	O15550	1401 aa	Predicted RBP	23.89	■■□□□ 1.42
RFK-204	ENST00000479197	ADAMTS8	Q9UP79	889 aa		23.89	■■□□□ 1.41
RFK-204	ENST00000479197	RGPD3	A6NKT7	1758 aa	Predicted RBP	23.88	■■□□□ 1.41
RFK-204	ENST00000479197	RGPD4	Q7Z3J3	1758 aa		23.88	■■□□□ 1.41
RFK-204	ENST00000479197	MAPK8IP3	Q9UPT6	1336 aa		23.88	■■□□□ 1.41
RFK-204	ENST00000479197	MAP3K5	Q99683	1374 aa		23.87	■■□□□ 1.41
RFK-204	ENST00000479197	MPRIP	Q6WCQ1	1025 aa		23.87	■■□□□ 1.41
RFK-204	ENST00000479197	DEFB132	Q7Z7B7	95 aa		23.87	■■□□□ 1.41
RFK-204	ENST00000479197	ADAMTS7	Q9UKP4	1686 aa		23.87	■■□□□ 1.41
RFK-204	ENST00000479197	DLG5	Q8TDM6	1919 aa		23.86	■■□□□ 1.41
RFK-204	ENST00000479197	GNAT3	A8MTJ3	354 aa		23.84	■■□□□ 1.41
RFK-204	ENST00000479197	ERVV-2	B6SEH9	535 aa		23.84	■■□□□ 1.41
RFK-204	ENST00000479197	PNISR	Q8TF01	805 aa	Known RBP	23.84	■■□□□ 1.41
RFK-204	ENST00000479197	EN1	Q05925	392 aa	Predicted RBP	23.84	■■□□□ 1.41
RFK-204	ENST00000479197	CCDC146	Q8IYE0	955 aa		23.83	■■□□□ 1.41
RFK-204	ENST00000479197	TMOD3	Q9NYL9	352 aa		23.83	■■□□□ 1.41
RFK-204	ENST00000479197	PLSCR1	O15162	318 aa		23.82	■■□□□ 1.4
RFK-204	ENST00000479197	RUNDC1	Q96C34	613 aa		23.82	■■□□□ 1.4
RFK-204	ENST00000479197	MRC1	P22897	1456 aa		23.81	■■□□□ 1.4
RFK-204	ENST00000479197	RNMT	O43148	476 aa	Known RBP	23.81	■■□□□ 1.4
RFK-204	ENST00000479197	LGR6	Q9HBX8	967 aa		23.81	■■□□□ 1.4
RFK-204	ENST00000479197	NFE2L2	Q16236	605 aa		23.8	■■□□□ 1.4
RFK-204	ENST00000479197	PIGB	Q92521	554 aa		23.8	■■□□□ 1.4
RFK-204	ENST00000479197	CAMKK2	Q96RR4	588 aa		23.8	■■□□□ 1.4
RFK-204	ENST00000479197	RREB1	Q92766	1687 aa		23.8	■■□□□ 1.4
RFK-204	ENST00000479197	CABP4	P57796	275 aa		23.79	■■□□□ 1.4
RFK-204	ENST00000479197	EZH2	Q15910	746 aa	Known RBP	23.79	■■□□□ 1.4
RFK-204	ENST00000479197	LY75	O60449	1722 aa		23.79	■■□□□ 1.4
RFK-204	ENST00000479197	CCER2	I3L3R5	266 aa		23.78	■■□□□ 1.4
RFK-204	ENST00000479197	RTF1	Q92541	710 aa	Known RBP	23.78	■■□□□ 1.4
RFK-204	ENST00000479197	HTATSF1	O43719	755 aa	Known RBP	23.77	■■□□□ 1.4
RFK-204	ENST00000479197	IL17RE	Q8NFR9	667 aa		23.77	■■□□□ 1.4
RFK-204	ENST00000479197	SLC52A2	Q9HAB3	445 aa		23.77	■■□□□ 1.4
RFK-204	ENST00000479197	CEMIP	Q8WUJ3	1361 aa		23.76	■■□□□ 1.39
RFK-204	ENST00000479197	NFATC2IP	Q8NCF5	419 aa		23.76	■■□□□ 1.39
RFK-204	ENST00000479197	SIPA1L3	O60292	1781 aa	Predicted RBP	23.76	■■□□□ 1.39

Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms