RNA–Protein interactions for RNA: ENST00000478896.2

VCL-205, Transcript of vinculin, humanhuman

TSL 5

Gene VCL, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-205ENST00000478896 CDCA8Q53HL2 280 aa18.5■□□□□ 0.55
VCL-205ENST00000478896 ZCRB1Q8TBF4 217 aaKnown RBP18.5■□□□□ 0.55
VCL-205ENST00000478896 SYT17Q9BSW7 474 aa18.5■□□□□ 0.55
VCL-205ENST00000478896 LY75O60449 1722 aa18.49■□□□□ 0.55
VCL-205ENST00000478896 TUBGCP6Q96RT7 1819 aa18.49■□□□□ 0.55
VCL-205ENST00000478896 FYB1O15117 783 aa18.49■□□□□ 0.55
VCL-205ENST00000478896 PRIM1P49642 420 aaKnown RBP18.49■□□□□ 0.55
VCL-205ENST00000478896 ARXQ96QS3 562 aa18.49■□□□□ 0.55
VCL-205ENST00000478896 SGIP1Q9BQI5 828 aa18.49■□□□□ 0.55
VCL-205ENST00000478896 USHBP1Q8N6Y0 703 aa18.48■□□□□ 0.55
VCL-205ENST00000478896 RAPGEF4Q8WZA2 1011 aa18.48■□□□□ 0.55
VCL-205ENST00000478896 AKT1S1Q96B36 256 aa18.47■□□□□ 0.55
VCL-205ENST00000478896 NSD2O96028 1365 aa18.46■□□□□ 0.55
VCL-205ENST00000478896 KCNQ4P56696 695 aa18.46■□□□□ 0.55
VCL-205ENST00000478896 NBPF6Q5VWK0 638 aa18.46■□□□□ 0.55
VCL-205ENST00000478896 KLHL34Q8N239 644 aa18.46■□□□□ 0.55
VCL-205ENST00000478896 NBPF4Q96M43 638 aa18.46■□□□□ 0.55
VCL-205ENST00000478896 TFCP2L1Q9NZI6 479 aa18.46■□□□□ 0.55
VCL-205ENST00000478896 CGNL1Q0VF96 1302 aa18.46■□□□□ 0.55
VCL-205ENST00000478896 FLT4P35916 1363 aa18.45■□□□□ 0.54
VCL-205ENST00000478896 TATP17735 454 aaPredicted RBP18.45■□□□□ 0.54
VCL-205ENST00000478896 PNPLA7Q6ZV29 1317 aa18.45■□□□□ 0.54
VCL-205ENST00000478896 POLD1P28340 1107 aa18.44■□□□□ 0.54
VCL-205ENST00000478896 SLC16A10Q8TF71 515 aa18.44■□□□□ 0.54
VCL-205ENST00000478896 CCNL1Q9UK58 526 aaPredicted RBP18.44■□□□□ 0.54
VCL-205ENST00000478896 CHD4Q14839 1912 aa18.44■□□□□ 0.54
VCL-205ENST00000478896 INSRP06213 1382 aa18.43■□□□□ 0.54
VCL-205ENST00000478896 NSD3Q9BZ95 1437 aa18.43■□□□□ 0.54
VCL-205ENST00000478896 PCDH11XQ9BZA7 1347 aa18.43■□□□□ 0.54
VCL-205ENST00000478896 PCDH11YQ9BZA8 1340 aa18.43■□□□□ 0.54
VCL-205ENST00000478896 MAP3K5Q99683 1374 aa18.42■□□□□ 0.54
VCL-205ENST00000478896 HSP90AB2PQ58FF8 381 aa18.42■□□□□ 0.54
VCL-205ENST00000478896 KIF24Q5T7B8 1368 aa18.42■□□□□ 0.54
VCL-205ENST00000478896 C5P01031 1676 aa18.41■□□□□ 0.54
VCL-205ENST00000478896 COL24A1Q17RW2 1714 aa18.4■□□□□ 0.54
VCL-205ENST00000478896 MSH5O43196 834 aa18.4■□□□□ 0.54
VCL-205ENST00000478896 PPM1GO15355 546 aaPredicted RBP18.38■□□□□ 0.53
VCL-205ENST00000478896 GPR162Q16538 588 aa18.38■□□□□ 0.53
VCL-205ENST00000478896 EMILIN1Q9Y6C2 1016 aa18.38■□□□□ 0.53
VCL-205ENST00000478896 PKD1L3Q7Z443 1732 aa18.37■□□□□ 0.53
VCL-205ENST00000478896 ANKRD26Q9UPS8 1709 aa18.37■□□□□ 0.53
VCL-205ENST00000478896 PELP1Q8IZL8 1130 aaKnown RBP18.37■□□□□ 0.53
VCL-205ENST00000478896 ZNF784Q8NCA9 323 aaPredicted RBP18.37■□□□□ 0.53
VCL-205ENST00000478896 CARD14Q9BXL6 1004 aa18.37■□□□□ 0.53
VCL-205ENST00000478896 TOGARAM1Q9Y4F4 1720 aa18.37■□□□□ 0.53
VCL-205ENST00000478896 ITGB4P16144 1822 aa18.37■□□□□ 0.53
VCL-205ENST00000478896 MAP2P11137 1827 aaKnown RBP18.36■□□□□ 0.53
VCL-205ENST00000478896 PALLDQ8WX93 1383 aa18.36■□□□□ 0.53
VCL-205ENST00000478896 POLR3GLQ9BT43 218 aa18.36■□□□□ 0.53
VCL-205ENST00000478896 TAF1LQ8IZX4 1826 aa18.35■□□□□ 0.53
VCL-205ENST00000478896 MPRIPQ6WCQ1 1025 aa18.35■□□□□ 0.53
VCL-205ENST00000478896 TIMELESSQ9UNS1 1208 aa18.34■□□□□ 0.53
VCL-205ENST00000478896 CYP27B1O15528 508 aa18.33■□□□□ 0.52
VCL-205ENST00000478896 HMGB2P26583 209 aaKnown RBP18.33■□□□□ 0.52
VCL-205ENST00000478896 COL23A1Q86Y22 540 aaPredicted RBP18.33■□□□□ 0.52
VCL-205ENST00000478896 MSL1Q68DK7 614 aa18.32■□□□□ 0.52
VCL-205ENST00000478896 PCGF6Q9BYE7 350 aa18.32■□□□□ 0.52
VCL-205ENST00000478896 C4BP0C0L5 1744 aa18.32■□□□□ 0.52
VCL-205ENST00000478896 UTRNP46939 3433 aa18.31■□□□□ 0.52
VCL-205ENST00000478896 NLGN2Q8NFZ4 835 aa18.31■□□□□ 0.52
VCL-205ENST00000478896 SPG7Q9UQ90 795 aa18.31■□□□□ 0.52
VCL-205ENST00000478896 NCAPD2Q15021 1401 aa18.31■□□□□ 0.52
VCL-205ENST00000478896 CLSPNQ9HAW4 1339 aa18.3■□□□□ 0.52
VCL-205ENST00000478896 SMARCC1Q92922 1105 aaPredicted RBP18.3■□□□□ 0.52
VCL-205ENST00000478896 WASHC2AQ641Q2 1341 aa18.29■□□□□ 0.52
VCL-205ENST00000478896 AK7Q96M32 723 aa18.29■□□□□ 0.52
VCL-205ENST00000478896 FLAD1Q8NFF5 587 aa18.28■□□□□ 0.52
VCL-205ENST00000478896 TNNT2P45379 298 aaPredicted RBP18.27■□□□□ 0.52
VCL-205ENST00000478896 EYA1Q99502 592 aa18.27■□□□□ 0.52
VCL-205ENST00000478896 PHF14O94880 888 aa18.26■□□□□ 0.51
VCL-205ENST00000478896 PIGBQ92521 554 aa18.26■□□□□ 0.51
VCL-205ENST00000478896 TMOD3Q9NYL9 352 aa18.26■□□□□ 0.51
VCL-205ENST00000478896 POLKQ9UBT6 870 aa18.26■□□□□ 0.51
VCL-205ENST00000478896 UBR3Q6ZT12 1888 aa18.26■□□□□ 0.51
VCL-205ENST00000478896 NKX1-1Q15270 411 aaPredicted RBP18.24■□□□□ 0.51
VCL-205ENST00000478896 IFNL2Q8IZJ0 200 aa18.24■□□□□ 0.51
VCL-205ENST00000478896 GRIN3BO60391 1043 aa18.23■□□□□ 0.51
VCL-205ENST00000478896 EIF4G2P78344 907 aaKnown RBP eCLIP18.23■□□□□ 0.516e-6■■■■□ 25.1
VCL-205ENST00000478896 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.23■□□□□ 0.511e-6■□□□□ 11
VCL-205ENST00000478896 LOC102724428A0A0B4J2F2 783 aa18.22■□□□□ 0.51
VCL-205ENST00000478896 PHKG2P15735 406 aa18.22■□□□□ 0.51
VCL-205ENST00000478896 YBX3P16989 372 aaKnown RBP eCLIP18.22■□□□□ 0.515e-8■■□□□ 13.4
VCL-205ENST00000478896 SIK1P57059 783 aa18.22■□□□□ 0.51
VCL-205ENST00000478896 EIF4A2Q14240 407 aaKnown RBP18.22■□□□□ 0.51
VCL-205ENST00000478896 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.21■□□□□ 0.51
VCL-205ENST00000478896 ATP6V1AP38606 617 aa18.2■□□□□ 0.5
VCL-205ENST00000478896 CD2APQ9Y5K6 639 aa18.2■□□□□ 0.5
VCL-205ENST00000478896 SENP3-EIF4A1A0A087X0R7 540 aa18.19■□□□□ 0.5
VCL-205ENST00000478896 GIGYF1O75420 1035 aaPredicted RBP18.19■□□□□ 0.5
VCL-205ENST00000478896 HSPA5P11021 654 aaKnown RBP18.19■□□□□ 0.5
VCL-205ENST00000478896 SSFA2P28290 1259 aa18.19■□□□□ 0.5
VCL-205ENST00000478896 C1QTNF8P60827 252 aa18.19■□□□□ 0.5
VCL-205ENST00000478896 AMIGO3Q86WK7 504 aa18.19■□□□□ 0.5
VCL-205ENST00000478896 LINC00116Q8NCU8 138 aa18.19■□□□□ 0.5
VCL-205ENST00000478896 PANK3Q9H999 370 aa18.19■□□□□ 0.5
VCL-205ENST00000478896 ASAP1Q9ULH1 1129 aa18.19■□□□□ 0.5
VCL-205ENST00000478896 PLEKHG2Q9H7P9 1386 aa18.18■□□□□ 0.5
VCL-205ENST00000478896 GNPATO15228 680 aa18.18■□□□□ 0.5
VCL-205ENST00000478896 SMIM5Q71RC9 77 aa18.18■□□□□ 0.5
VCL-205ENST00000478896 IGSF1Q8N6C5 1336 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms