RNA–Protein interactions for RNA: ENST00000476930.1

PTPRN-213, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 3

Gene PTPRN, Length 582 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-213ENST00000476930 ANO8Q9HCE9 1232 aaPredicted RBP15.43■□□□□ 0.06
PTPRN-213ENST00000476930 SMG6Q86US8 1419 aaKnown RBP15.43■□□□□ 0.06
PTPRN-213ENST00000476930 KIF24Q5T7B8 1368 aa15.42■□□□□ 0.06
PTPRN-213ENST00000476930 TXNRD1Q16881 649 aa15.42■□□□□ 0.06
PTPRN-213ENST00000476930 PPM1GO15355 546 aaPredicted RBP15.41■□□□□ 0.06
PTPRN-213ENST00000476930 ZCRB1Q8TBF4 217 aaKnown RBP15.41■□□□□ 0.06
PTPRN-213ENST00000476930 CASZ1Q86V15 1759 aa15.41■□□□□ 0.06
PTPRN-213ENST00000476930 ITGB4P16144 1822 aa15.39■□□□□ 0.05
PTPRN-213ENST00000476930 TNNT2P45379 298 aaPredicted RBP15.39■□□□□ 0.05
PTPRN-213ENST00000476930 POLKQ9UBT6 870 aa15.39■□□□□ 0.05
PTPRN-213ENST00000476930 LY75O60449 1722 aa15.38■□□□□ 0.05
PTPRN-213ENST00000476930 PKD1L3Q7Z443 1732 aa15.38■□□□□ 0.05
PTPRN-213ENST00000476930 RAPGEF4Q8WZA2 1011 aa15.38■□□□□ 0.05
PTPRN-213ENST00000476930 PDGFDQ9GZP0 370 aaPredicted RBP15.38■□□□□ 0.05
PTPRN-213ENST00000476930 WASHC2AQ641Q2 1341 aa15.38■□□□□ 0.05
PTPRN-213ENST00000476930 PAPPAQ13219 1627 aa15.37■□□□□ 0.05
PTPRN-213ENST00000476930 PRIM1P49642 420 aaKnown RBP15.37■□□□□ 0.05
PTPRN-213ENST00000476930 TATP17735 454 aaPredicted RBP15.36■□□□□ 0.05
PTPRN-213ENST00000476930 SYTL4Q96C24 671 aaPredicted RBP15.36■□□□□ 0.05
PTPRN-213ENST00000476930 TOGARAM1Q9Y4F4 1720 aa15.35■□□□□ 0.05
PTPRN-213ENST00000476930 TUBGCP6Q96RT7 1819 aa15.35■□□□□ 0.05
PTPRN-213ENST00000476930 KIF7Q2M1P5 1343 aa15.35■□□□□ 0.05
PTPRN-213ENST00000476930 NSD2O96028 1365 aa15.35■□□□□ 0.05
PTPRN-213ENST00000476930 NCAPD2Q15021 1401 aa15.34■□□□□ 0.05
PTPRN-213ENST00000476930 SLC15A2Q16348 729 aa15.34■□□□□ 0.05
PTPRN-213ENST00000476930 EYA1Q99502 592 aa15.34■□□□□ 0.05
PTPRN-213ENST00000476930 LRRC4BQ9NT99 713 aa15.34■□□□□ 0.05
PTPRN-213ENST00000476930 STK32BQ9NY57 414 aa15.34■□□□□ 0.05
PTPRN-213ENST00000476930 UTRNP46939 3433 aa15.33■□□□□ 0.04
PTPRN-213ENST00000476930 CYP27B1O15528 508 aa15.32■□□□□ 0.04
PTPRN-213ENST00000476930 EIF4A2Q14240 407 aaKnown RBP15.32■□□□□ 0.04
PTPRN-213ENST00000476930 SPON1Q9HCB6 807 aa15.32■□□□□ 0.04
PTPRN-213ENST00000476930 QSER1Q2KHR3 1735 aa15.31■□□□□ 0.04
PTPRN-213ENST00000476930 KCNQ4P56696 695 aa15.31■□□□□ 0.04
PTPRN-213ENST00000476930 KNSTRNQ9Y448 316 aa15.31■□□□□ 0.04
PTPRN-213ENST00000476930 PCDH11XQ9BZA7 1347 aa15.31■□□□□ 0.04
PTPRN-213ENST00000476930 PCDH11YQ9BZA8 1340 aa15.31■□□□□ 0.04
PTPRN-213ENST00000476930 TAF1LQ8IZX4 1826 aa15.31■□□□□ 0.04
PTPRN-213ENST00000476930 ZBTB7AO95365 584 aa15.3■□□□□ 0.04
PTPRN-213ENST00000476930 ZNF827Q17R98 1081 aa15.3■□□□□ 0.04
PTPRN-213ENST00000476930 MORC1Q86VD1 984 aa15.3■□□□□ 0.04
PTPRN-213ENST00000476930 AMER1Q5JTC6 1135 aaPredicted RBP15.28■□□□□ 0.04
PTPRN-213ENST00000476930 SLC27A3Q5K4L6 730 aa15.28■□□□□ 0.04
PTPRN-213ENST00000476930 ATF5Q9Y2D1 282 aaPredicted RBP15.28■□□□□ 0.04
PTPRN-213ENST00000476930 MPRIPQ6WCQ1 1025 aa15.27■□□□□ 0.04
PTPRN-213ENST00000476930 AKT1S1Q96B36 256 aa15.27■□□□□ 0.04
PTPRN-213ENST00000476930 PPP1R1BQ9UD71 204 aaPredicted RBP15.27■□□□□ 0.04
PTPRN-213ENST00000476930 C5P01031 1676 aa15.27■□□□□ 0.03
PTPRN-213ENST00000476930 GOLGB1Q14789 3259 aaKnown RBP15.26■□□□□ 0.03
PTPRN-213ENST00000476930 PER1O15534 1290 aaPredicted RBP15.26■□□□□ 0.03
PTPRN-213ENST00000476930 SPG7Q9UQ90 795 aa15.26■□□□□ 0.03
PTPRN-213ENST00000476930 IGSF1Q8N6C5 1336 aa15.25■□□□□ 0.03
PTPRN-213ENST00000476930 VIRMAQ69YN4 1812 aaKnown RBP15.25■□□□□ 0.03
PTPRN-213ENST00000476930 PTGER2P43116 358 aa15.25■□□□□ 0.03
PTPRN-213ENST00000476930 NKX1-1Q15270 411 aaPredicted RBP15.25■□□□□ 0.03
PTPRN-213ENST00000476930 CCNL1Q9UK58 526 aaPredicted RBP15.25■□□□□ 0.03
PTPRN-213ENST00000476930 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.24■□□□□ 0.03
PTPRN-213ENST00000476930 COL24A1Q17RW2 1714 aa15.23■□□□□ 0.03
PTPRN-213ENST00000476930 PHKG2P15735 406 aa15.23■□□□□ 0.03
PTPRN-213ENST00000476930 CC2D1BQ5T0F9 858 aaKnown RBP15.23■□□□□ 0.03
PTPRN-213ENST00000476930 AEBP1Q8IUX7 1158 aa15.23■□□□□ 0.03
PTPRN-213ENST00000476930 MTFR1LQ9H019 292 aa15.23■□□□□ 0.03
PTPRN-213ENST00000476930 PNPLA7Q6ZV29 1317 aa15.22■□□□□ 0.03
PTPRN-213ENST00000476930 IFNL2Q8IZJ0 200 aa15.22■□□□□ 0.03
PTPRN-213ENST00000476930 PIGBQ92521 554 aa15.22■□□□□ 0.03
PTPRN-213ENST00000476930 SGIP1Q9BQI5 828 aa15.22■□□□□ 0.03
PTPRN-213ENST00000476930 PALLDQ8WX93 1383 aa15.22■□□□□ 0.03
PTPRN-213ENST00000476930 IL13P35225 146 aa15.21■□□□□ 0.03
PTPRN-213ENST00000476930 TFCP2L1Q9NZI6 479 aa15.21■□□□□ 0.03
PTPRN-213ENST00000476930 UBR3Q6ZT12 1888 aa15.2■□□□□ 0.02
PTPRN-213ENST00000476930 MTHFSP49914 203 aa15.2■□□□□ 0.02
PTPRN-213ENST00000476930 CNGB1Q14028 1251 aaPredicted RBP15.2■□□□□ 0.02
PTPRN-213ENST00000476930 SULT6B1Q6IMI4 303 aa15.19■□□□□ 0.02
PTPRN-213ENST00000476930 C4BP0C0L5 1744 aa15.19■□□□□ 0.02
PTPRN-213ENST00000476930 SCN11AQ9UI33 1791 aa15.19■□□□□ 0.02
PTPRN-213ENST00000476930 PLEKHO1Q53GL0 409 aaPredicted RBP15.18■□□□□ 0.02
PTPRN-213ENST00000476930 TMOD3Q9NYL9 352 aa15.18■□□□□ 0.02
PTPRN-213ENST00000476930 PLEKHG2Q9H7P9 1386 aa15.18■□□□□ 0.02
PTPRN-213ENST00000476930 COL23A1Q86Y22 540 aaPredicted RBP15.17■□□□□ 0.02
PTPRN-213ENST00000476930 SMARCC1Q92922 1105 aaPredicted RBP15.17■□□□□ 0.02
PTPRN-213ENST00000476930 FHDC1Q9C0D6 1143 aaPredicted RBP15.17■□□□□ 0.02
PTPRN-213ENST00000476930 ASAP1Q9ULH1 1129 aa15.17■□□□□ 0.02
PTPRN-213ENST00000476930 KDRP35968 1356 aa15.16■□□□□ 0.02
PTPRN-213ENST00000476930 ZNF530Q6P9A1 599 aaPredicted RBP15.16■□□□□ 0.02
PTPRN-213ENST00000476930 SLC16A10Q8TF71 515 aa15.16■□□□□ 0.02
PTPRN-213ENST00000476930 ARXQ96QS3 562 aa15.16■□□□□ 0.02
PTPRN-213ENST00000476930 KDM6AO15550 1401 aaPredicted RBP15.16■□□□□ 0.02
PTPRN-213ENST00000476930 NPC1L1Q9UHC9 1359 aa15.15■□□□□ 0.02
PTPRN-213ENST00000476930 AMOTQ4VCS5 1084 aa15.15■□□□□ 0.02
PTPRN-213ENST00000476930 SYT17Q9BSW7 474 aa15.15■□□□□ 0.02
PTPRN-213ENST00000476930 ATG3Q9NT62 314 aa15.15■□□□□ 0.02
PTPRN-213ENST00000476930 LOC102724428A0A0B4J2F2 783 aa15.14■□□□□ 0.01
PTPRN-213ENST00000476930 MSH5O43196 834 aa15.14■□□□□ 0.01
PTPRN-213ENST00000476930 SIK1P57059 783 aa15.14■□□□□ 0.01
PTPRN-213ENST00000476930 AMIGO3Q86WK7 504 aa15.14■□□□□ 0.01
PTPRN-213ENST00000476930 MYH14Q7Z406 1995 aaKnown RBP15.14■□□□□ 0.01
PTPRN-213ENST00000476930 ERVV-2B6SEH9 535 aa15.13■□□□□ 0.01
PTPRN-213ENST00000476930 HSP90AB1P08238 724 aaKnown RBP15.13■□□□□ 0.01
PTPRN-213ENST00000476930 HMOX1P09601 288 aa15.13■□□□□ 0.01
PTPRN-213ENST00000476930 COL5A3P25940 1745 aaPredicted RBP15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms