RNA–Protein interactions for RNA: ENST00000476494.1

CLDN4-205, Transcript of claudin 4, humanhuman

TSL 4

Gene CLDN4, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-205ENST00000476494 KIF13BQ9NQT8 1826 aa9.61□□□□□ -0.87
CLDN4-205ENST00000476494 ITGAEP38570 1179 aa9.61□□□□□ -0.87
CLDN4-205ENST00000476494 AMIGO3Q86WK7 504 aa9.61□□□□□ -0.87
CLDN4-205ENST00000476494 SLC4A1APQ9BWU0 796 aaKnown RBP9.61□□□□□ -0.87
CLDN4-205ENST00000476494 CPSF1Q10570 1443 aaKnown RBP9.61□□□□□ -0.87
CLDN4-205ENST00000476494 ERBB3P21860 1342 aa9.6□□□□□ -0.87
CLDN4-205ENST00000476494 BRCA1P38398 1863 aaKnown RBP9.6□□□□□ -0.87
CLDN4-205ENST00000476494 PKD1L3Q7Z443 1732 aa9.6□□□□□ -0.87
CLDN4-205ENST00000476494 ZBTB7CA1YPR0 619 aa9.6□□□□□ -0.87
CLDN4-205ENST00000476494 MSH5O43196 834 aa9.6□□□□□ -0.87
CLDN4-205ENST00000476494 TRIM26Q12899 539 aaPredicted RBP9.6□□□□□ -0.87
CLDN4-205ENST00000476494 CDK19Q9BWU1 502 aa9.6□□□□□ -0.87
CLDN4-205ENST00000476494 TNRC6CQ9HCJ0 1690 aaKnown RBP9.6□□□□□ -0.87
CLDN4-205ENST00000476494 SBF1O95248 1867 aa9.59□□□□□ -0.87
CLDN4-205ENST00000476494 NLRP6P59044 892 aa9.59□□□□□ -0.87
CLDN4-205ENST00000476494 C9orf131Q5VYM1 1079 aa9.59□□□□□ -0.87
CLDN4-205ENST00000476494 N4BP2Q86UW6 1770 aaPredicted RBP9.59□□□□□ -0.87
CLDN4-205ENST00000476494 TAF1LQ8IZX4 1826 aa9.59□□□□□ -0.88
CLDN4-205ENST00000476494 CTCFP49711 727 aaPredicted RBP9.58□□□□□ -0.88
CLDN4-205ENST00000476494 TOGARAM1Q9Y4F4 1720 aa9.58□□□□□ -0.88
CLDN4-205ENST00000476494 PLEKHG2Q9H7P9 1386 aa9.58□□□□□ -0.88
CLDN4-205ENST00000476494 IL2RBP14784 551 aa9.57□□□□□ -0.88
CLDN4-205ENST00000476494 PRIM1P49642 420 aaKnown RBP9.57□□□□□ -0.88
CLDN4-205ENST00000476494 ARHGAP27Q6ZUM4 889 aa9.57□□□□□ -0.88
CLDN4-205ENST00000476494 SMIM5Q71RC9 77 aa9.57□□□□□ -0.88
CLDN4-205ENST00000476494 WBP1LQ9NX94 342 aa9.57□□□□□ -0.88
CLDN4-205ENST00000476494 CCNL1Q9UK58 526 aaPredicted RBP9.57□□□□□ -0.88
CLDN4-205ENST00000476494 KDM2BQ8NHM5 1336 aa9.56□□□□□ -0.88
CLDN4-205ENST00000476494 VIRMAQ69YN4 1812 aaKnown RBP9.56□□□□□ -0.88
CLDN4-205ENST00000476494 ANKRD36BQ8N2N9 1353 aa9.56□□□□□ -0.88
CLDN4-205ENST00000476494 LBX1P52954 281 aa9.56□□□□□ -0.88
CLDN4-205ENST00000476494 FLAD1Q8NFF5 587 aa9.56□□□□□ -0.88
CLDN4-205ENST00000476494 BCS1LQ9Y276 419 aa9.56□□□□□ -0.88
CLDN4-205ENST00000476494 ARFGEF1Q9Y6D6 1849 aa9.56□□□□□ -0.88
CLDN4-205ENST00000476494 UBR3Q6ZT12 1888 aa9.55□□□□□ -0.88
CLDN4-205ENST00000476494 C5P01031 1676 aa9.55□□□□□ -0.88
CLDN4-205ENST00000476494 CSB-PGBD3P0DP91 1061 aa9.55□□□□□ -0.88
CLDN4-205ENST00000476494 KCNA3P22001 575 aa9.55□□□□□ -0.88
CLDN4-205ENST00000476494 A0A0G2JLW4 131 aa9.54□□□□□ -0.88
CLDN4-205ENST00000476494 POTECB2RU33 542 aa9.54□□□□□ -0.88
CLDN4-205ENST00000476494 TGFB2P61812 414 aa9.54□□□□□ -0.88
CLDN4-205ENST00000476494 PPARGC1BQ86YN6 1023 aaKnown RBP9.54□□□□□ -0.88
CLDN4-205ENST00000476494 CREBZFQ9NS37 354 aa9.54□□□□□ -0.88
CLDN4-205ENST00000476494 MKRN1Q9UHC7 482 aaKnown RBP9.54□□□□□ -0.88
CLDN4-205ENST00000476494 NFAT5O94916 1531 aa9.54□□□□□ -0.88
CLDN4-205ENST00000476494 CNTNAP1P78357 1384 aa9.53□□□□□ -0.88
CLDN4-205ENST00000476494 CCDC85CA6NKD9 419 aa9.53□□□□□ -0.88
CLDN4-205ENST00000476494 HSPA8P11142 646 aaKnown RBP9.53□□□□□ -0.88
CLDN4-205ENST00000476494 DOT1LQ8TEK3 1739 aa9.53□□□□□ -0.88
CLDN4-205ENST00000476494 VEGFAP15692 232 aaPredicted RBP9.51□□□□□ -0.89
CLDN4-205ENST00000476494 KCNH5Q8NCM2 988 aa9.51□□□□□ -0.89
CLDN4-205ENST00000476494 DDX54Q8TDD1 881 aaKnown RBP9.51□□□□□ -0.89
CLDN4-205ENST00000476494 C4BP0C0L5 1744 aa9.51□□□□□ -0.89
CLDN4-205ENST00000476494 KDM6AO15550 1401 aaPredicted RBP9.5□□□□□ -0.89
CLDN4-205ENST00000476494 FCHSD2O94868 740 aa9.5□□□□□ -0.89
CLDN4-205ENST00000476494 DPEP1P16444 411 aa9.5□□□□□ -0.89
CLDN4-205ENST00000476494 VEGFBP49765 207 aa9.5□□□□□ -0.89
CLDN4-205ENST00000476494 SYTL4Q96C24 671 aaPredicted RBP9.5□□□□□ -0.89
CLDN4-205ENST00000476494 DCAF5Q96JK2 942 aa9.5□□□□□ -0.89
CLDN4-205ENST00000476494 NLRP2Q9NX02 1062 aa9.5□□□□□ -0.89
CLDN4-205ENST00000476494 RNF181Q9P0P0 153 aa9.5□□□□□ -0.89
CLDN4-205ENST00000476494 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.49□□□□□ -0.89
CLDN4-205ENST00000476494 GLTPD2A6NH11 291 aa9.49□□□□□ -0.89
CLDN4-205ENST00000476494 MMP10P09238 476 aa9.48□□□□□ -0.89
CLDN4-205ENST00000476494 PCGF6Q9BYE7 350 aa9.48□□□□□ -0.89
CLDN4-205ENST00000476494 USP47Q96K76 1375 aa9.48□□□□□ -0.89
CLDN4-205ENST00000476494 NSD3Q9BZ95 1437 aa9.48□□□□□ -0.89
CLDN4-205ENST00000476494 AIDAQ96BJ3 306 aa9.47□□□□□ -0.89
CLDN4-205ENST00000476494 MPHOSPH9Q99550 1183 aa9.47□□□□□ -0.89
CLDN4-205ENST00000476494 CABP1Q9NZU7 370 aa9.47□□□□□ -0.89
CLDN4-205ENST00000476494 ZC3H4Q9UPT8 1303 aaKnown RBP9.47□□□□□ -0.89
CLDN4-205ENST00000476494 SOX12O15370 315 aa9.46□□□□□ -0.9
CLDN4-205ENST00000476494 SSFA2P28290 1259 aa9.46□□□□□ -0.9
CLDN4-205ENST00000476494 MAP2P11137 1827 aaKnown RBP9.46□□□□□ -0.9
CLDN4-205ENST00000476494 TTC21BQ7Z4L5 1316 aa9.46□□□□□ -0.9
CLDN4-205ENST00000476494 PASKQ96RG2 1323 aa9.46□□□□□ -0.9
CLDN4-205ENST00000476494 CCDC88AQ3V6T2 1871 aa9.45□□□□□ -0.9
CLDN4-205ENST00000476494 PHF14O94880 888 aa9.44□□□□□ -0.9
CLDN4-205ENST00000476494 POTEIP0CG38 1075 aa9.44□□□□□ -0.9
CLDN4-205ENST00000476494 POTEJP0CG39 1038 aa9.44□□□□□ -0.9
CLDN4-205ENST00000476494 PRPF38BQ5VTL8 546 aaKnown RBP9.44□□□□□ -0.9
CLDN4-205ENST00000476494 ANKRD24Q8TF21 1146 aa9.44□□□□□ -0.9
CLDN4-205ENST00000476494 CABP2Q9NPB3 220 aa9.44□□□□□ -0.9
CLDN4-205ENST00000476494 PALLDQ8WX93 1383 aa9.43□□□□□ -0.9
CLDN4-205ENST00000476494 HMGB2P26583 209 aaKnown RBP9.43□□□□□ -0.9
CLDN4-205ENST00000476494 CHADLQ6NUI6 762 aa9.43□□□□□ -0.9
CLDN4-205ENST00000476494 PIM2Q9P1W9 311 aa9.43□□□□□ -0.9
CLDN4-205ENST00000476494 LTN1O94822 1766 aa9.42□□□□□ -0.9
CLDN4-205ENST00000476494 FAM208AQ9UK61 1670 aaKnown RBP9.42□□□□□ -0.9
CLDN4-205ENST00000476494 ITGBL1O95965 494 aaPredicted RBP9.42□□□□□ -0.9
CLDN4-205ENST00000476494 AK7Q96M32 723 aa9.42□□□□□ -0.9
CLDN4-205ENST00000476494 CASP8AP2Q9UKL3 1982 aa9.41□□□□□ -0.9
CLDN4-205ENST00000476494 RASSF10A6NK89 507 aa9.41□□□□□ -0.9
CLDN4-205ENST00000476494 SRPK2P78362 688 aaKnown RBP9.41□□□□□ -0.9
CLDN4-205ENST00000476494 RASSF7Q02833 373 aa9.41□□□□□ -0.9
CLDN4-205ENST00000476494 DALRD3Q5D0E6 543 aaKnown RBP9.41□□□□□ -0.9
CLDN4-205ENST00000476494 LINC00116Q8NCU8 138 aa9.41□□□□□ -0.9
CLDN4-205ENST00000476494 ZCRB1Q8TBF4 217 aaKnown RBP9.41□□□□□ -0.9
CLDN4-205ENST00000476494 MCOLN1Q9GZU1 580 aa9.41□□□□□ -0.9
CLDN4-205ENST00000476494 C4AP0C0L4 1744 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms