RNA–Protein interactions for RNA: ENST00000476342.1

HOXB3-208, Transcript of homeobox B3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXB3, Length 1,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXB3-208ENST00000476342 PLEKHG2Q9H7P9 1386 aa39.63■■■■□ 3.94
HOXB3-208ENST00000476342 U2SURPO15042 1029 aaKnown RBP39.63■■■■□ 3.93
HOXB3-208ENST00000476342 FAM182BQ5T319 152 aa39.63■■■■□ 3.93
HOXB3-208ENST00000476342 PKD1L3Q7Z443 1732 aa39.61■■■■□ 3.93
HOXB3-208ENST00000476342 FAM196AQ6ZSG2 479 aa39.61■■■■□ 3.93
HOXB3-208ENST00000476342 AEBP1Q8IUX7 1158 aa39.6■■■■□ 3.93
HOXB3-208ENST00000476342 MARCH10Q8NA82 808 aaPredicted RBP39.6■■■■□ 3.93
HOXB3-208ENST00000476342 SHANK3Q9BYB0 1731 aa39.6■■■■□ 3.93
HOXB3-208ENST00000476342 SOCS7O14512 581 aa39.59■■■■□ 3.93
HOXB3-208ENST00000476342 HMOX1P09601 288 aa39.57■■■■□ 3.92
HOXB3-208ENST00000476342 DDX54Q8TDD1 881 aaKnown RBP39.56■■■■□ 3.92
HOXB3-208ENST00000476342 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP39.56■■■■□ 3.92
HOXB3-208ENST00000476342 SPG7Q9UQ90 795 aa39.56■■■■□ 3.92
HOXB3-208ENST00000476342 PCDH11XQ9BZA7 1347 aa39.55■■■■□ 3.92
HOXB3-208ENST00000476342 PCDH11YQ9BZA8 1340 aa39.55■■■■□ 3.92
HOXB3-208ENST00000476342 BCL9O00512 1426 aa39.53■■■■□ 3.92
HOXB3-208ENST00000476342 U2AF1L5P0DN76 240 aaPredicted RBP39.5■■■■□ 3.91
HOXB3-208ENST00000476342 U2AF1Q01081 240 aaKnown RBP eCLIP39.5■■■■□ 3.914e-6■■■■□ 20.8
HOXB3-208ENST00000476342 UPF1Q92900 1129 aaKnown RBP eCLIP39.5■■■■□ 3.912e-6■■■□□ 17.8
HOXB3-208ENST00000476342 PLEKHO1Q53GL0 409 aaPredicted RBP39.49■■■■□ 3.91
HOXB3-208ENST00000476342 AMOTQ4VCS5 1084 aa39.48■■■■□ 3.91
HOXB3-208ENST00000476342 SBF2Q86WG5 1849 aa39.47■■■■□ 3.91
HOXB3-208ENST00000476342 CCDC125Q86Z20 511 aa39.47■■■■□ 3.91
HOXB3-208ENST00000476342 CYP27B1O15528 508 aa39.43■■■■□ 3.9
HOXB3-208ENST00000476342 SF3B2Q13435 895 aaKnown RBP39.42■■■■□ 3.9
HOXB3-208ENST00000476342 KAT6BQ8WYB5 2073 aa39.41■■■■□ 3.9
HOXB3-208ENST00000476342 FCHSD2O94868 740 aa39.41■■■■□ 3.9
HOXB3-208ENST00000476342 IFNL2Q8IZJ0 200 aa39.41■■■■□ 3.9
HOXB3-208ENST00000476342 TRIM37O94972 964 aa39.4■■■■□ 3.9
HOXB3-208ENST00000476342 RSPH6AQ9H0K4 717 aa39.4■■■■□ 3.9
HOXB3-208ENST00000476342 ZNF530Q6P9A1 599 aaPredicted RBP39.39■■■■□ 3.9
HOXB3-208ENST00000476342 TNS1Q9HBL0 1735 aaKnown RBP39.38■■■■□ 3.89
HOXB3-208ENST00000476342 NHSQ6T4R5 1651 aa39.38■■■■□ 3.89
HOXB3-208ENST00000476342 PHKG2P15735 406 aa39.38■■■■□ 3.89
HOXB3-208ENST00000476342 PRKAR2BP31323 418 aa39.38■■■■□ 3.89
HOXB3-208ENST00000476342 DOT1LQ8TEK3 1739 aa39.38■■■■□ 3.89
HOXB3-208ENST00000476342 C1orf141Q5JVX7 400 aa39.36■■■■□ 3.89
HOXB3-208ENST00000476342 WDR43Q15061 677 aaKnown RBP eCLIP39.35■■■■□ 3.894e-9■■□□□ 12.8
HOXB3-208ENST00000476342 NKX1-1Q15270 411 aaPredicted RBP39.34■■■■□ 3.89
HOXB3-208ENST00000476342 ACSBG1Q96GR2 724 aa39.34■■■■□ 3.89
HOXB3-208ENST00000476342 BCL11BQ9C0K0 894 aaPredicted RBP39.33■■■■□ 3.89
HOXB3-208ENST00000476342 PNNQ9H307 717 aaKnown RBP39.33■■■■□ 3.89
HOXB3-208ENST00000476342 HSP90AB1P08238 724 aaKnown RBP39.32■■■■□ 3.89
HOXB3-208ENST00000476342 NEFMP07197 916 aa39.31■■■■□ 3.88
HOXB3-208ENST00000476342 MTHFSDQ2M296 383 aaKnown RBP39.3■■■■□ 3.88
HOXB3-208ENST00000476342 GAS2L2Q8NHY3 880 aa39.3■■■■□ 3.88
HOXB3-208ENST00000476342 AKAP4Q5JQC9 854 aa39.29■■■■□ 3.88
HOXB3-208ENST00000476342 BAG6P46379 1132 aa39.28■■■■□ 3.88
HOXB3-208ENST00000476342 DIEXFQ68CQ4 756 aaKnown RBP39.28■■■■□ 3.88
HOXB3-208ENST00000476342 KCNQ2O43526 872 aa39.27■■■■□ 3.88
HOXB3-208ENST00000476342 TOGARAM1Q9Y4F4 1720 aa39.27■■■■□ 3.88
HOXB3-208ENST00000476342 SYTL4Q96C24 671 aaPredicted RBP39.26■■■■□ 3.88
HOXB3-208ENST00000476342 MRS2Q9HD23 443 aa39.26■■■■□ 3.88
HOXB3-208ENST00000476342 APBA3O96018 575 aa39.25■■■■□ 3.87
HOXB3-208ENST00000476342 DCAF5Q96JK2 942 aa39.25■■■■□ 3.87
HOXB3-208ENST00000476342 PHACTR3Q96KR7 559 aa39.25■■■■□ 3.87
HOXB3-208ENST00000476342 PRIM1P49642 420 aaKnown RBP39.24■■■■□ 3.87
HOXB3-208ENST00000476342 CCDC184Q52MB2 194 aa39.24■■■■□ 3.87
HOXB3-208ENST00000476342 BTAF1O14981 1849 aa39.22■■■■□ 3.87
HOXB3-208ENST00000476342 ITGB4P16144 1822 aa39.22■■■■□ 3.87
HOXB3-208ENST00000476342 MAPK8IP3Q9UPT6 1336 aa39.22■■■■□ 3.87
HOXB3-208ENST00000476342 PTF1AQ7RTS3 328 aa39.22■■■■□ 3.87
HOXB3-208ENST00000476342 PLEKHF1Q96S99 279 aa39.21■■■■□ 3.87
HOXB3-208ENST00000476342 KDM6AO15550 1401 aaPredicted RBP39.2■■■■□ 3.87
HOXB3-208ENST00000476342 DEFB132Q7Z7B7 95 aa39.19■■■■□ 3.86
HOXB3-208ENST00000476342 ADAMTS8Q9UP79 889 aa39.19■■■■□ 3.86
HOXB3-208ENST00000476342 SCN11AQ9UI33 1791 aa39.19■■■■□ 3.86
HOXB3-208ENST00000476342 VIRMAQ69YN4 1812 aaKnown RBP39.18■■■■□ 3.86
HOXB3-208ENST00000476342 MPRIPQ6WCQ1 1025 aa39.18■■■■□ 3.86
HOXB3-208ENST00000476342 MAP3K5Q99683 1374 aa39.18■■■■□ 3.86
HOXB3-208ENST00000476342 RGPD3A6NKT7 1758 aaPredicted RBP39.17■■■■□ 3.86
HOXB3-208ENST00000476342 RGPD4Q7Z3J3 1758 aa39.17■■■■□ 3.86
HOXB3-208ENST00000476342 ERVV-2B6SEH9 535 aa39.16■■■■□ 3.86
HOXB3-208ENST00000476342 GNAT3A8MTJ3 354 aa39.15■■■■□ 3.86
HOXB3-208ENST00000476342 PLSCR1O15162 318 aa39.14■■■■□ 3.86
HOXB3-208ENST00000476342 EN1Q05925 392 aaPredicted RBP39.14■■■■□ 3.86
HOXB3-208ENST00000476342 TMOD3Q9NYL9 352 aa39.14■■■■□ 3.86
HOXB3-208ENST00000476342 ADAMTS7Q9UKP4 1686 aa39.13■■■■□ 3.85
HOXB3-208ENST00000476342 PNISRQ8TF01 805 aaKnown RBP39.11■■■■□ 3.85
HOXB3-208ENST00000476342 RUNDC1Q96C34 613 aa39.1■■■■□ 3.85
HOXB3-208ENST00000476342 RNMTO43148 476 aaKnown RBP39.09■■■■□ 3.85
HOXB3-208ENST00000476342 CABP4P57796 275 aa39.09■■■■□ 3.85
HOXB3-208ENST00000476342 CCDC146Q8IYE0 955 aa39.09■■■■□ 3.85
HOXB3-208ENST00000476342 DLG5Q8TDM6 1919 aa39.09■■■■□ 3.85
HOXB3-208ENST00000476342 CAMKK2Q96RR4 588 aa39.08■■■■□ 3.85
HOXB3-208ENST00000476342 NFE2L2Q16236 605 aa39.07■■■■□ 3.85
HOXB3-208ENST00000476342 PIGBQ92521 554 aa39.07■■■■□ 3.85
HOXB3-208ENST00000476342 LGR6Q9HBX8 967 aa39.07■■■■□ 3.85
HOXB3-208ENST00000476342 EZH2Q15910 746 aaKnown RBP39.06■■■■□ 3.84
HOXB3-208ENST00000476342 RTF1Q92541 710 aaKnown RBP39.06■■■■□ 3.84
HOXB3-208ENST00000476342 MRC1P22897 1456 aa39.05■■■■□ 3.84
HOXB3-208ENST00000476342 RREB1Q92766 1687 aa39.04■■■■□ 3.84
HOXB3-208ENST00000476342 HTATSF1O43719 755 aaKnown RBP39.04■■■■□ 3.84
HOXB3-208ENST00000476342 CCER2I3L3R5 266 aa39.03■■■■□ 3.84
HOXB3-208ENST00000476342 SLC52A2Q9HAB3 445 aa39.03■■■■□ 3.84
HOXB3-208ENST00000476342 NFATC2IPQ8NCF5 419 aa39.01■■■■□ 3.84
HOXB3-208ENST00000476342 IL17REQ8NFR9 667 aa39.01■■■■□ 3.84
HOXB3-208ENST00000476342 SMARCC1Q92922 1105 aaPredicted RBP39.01■■■■□ 3.84
HOXB3-208ENST00000476342 CEMIPQ8WUJ3 1361 aa39■■■■□ 3.83
HOXB3-208ENST00000476342 LY75O60449 1722 aa39■■■■□ 3.83
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms