RNA–Protein interactions for RNA: ENST00000475540.1

SMC5-203, Transcript of structural maintenance of chromosomes 5, humanhuman

TSL 3

Gene SMC5, Length 688 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC5-203ENST00000475540 RELBQ01201 579 aa13.18□□□□□ -0.3
SMC5-203ENST00000475540 PIK3CDO00329 1044 aa13.17□□□□□ -0.3
SMC5-203ENST00000475540 OXLD1Q5BKU9 147 aa13.17□□□□□ -0.3
SMC5-203ENST00000475540 NFATC2IPQ8NCF5 419 aa13.17□□□□□ -0.3
SMC5-203ENST00000475540 TRIM47Q96LD4 638 aa13.17□□□□□ -0.3
SMC5-203ENST00000475540 ATP5J2-PTCD1G3V325 749 aa13.15□□□□□ -0.3
SMC5-203ENST00000475540 PTGIRP43119 386 aa13.15□□□□□ -0.3
SMC5-203ENST00000475540 ERICH6Q7L0X2 663 aa13.15□□□□□ -0.3
SMC5-203ENST00000475540 ZNF395Q9H8N7 513 aaPredicted RBP13.15□□□□□ -0.3
SMC5-203ENST00000475540 LZTS3O60299 673 aaPredicted RBP13.14□□□□□ -0.31
SMC5-203ENST00000475540 CYP2U1Q7Z449 544 aa13.14□□□□□ -0.31
SMC5-203ENST00000475540 OSBPL3Q9H4L5 887 aa13.13□□□□□ -0.31
SMC5-203ENST00000475540 SPINT1O43278 529 aa13.12□□□□□ -0.31
SMC5-203ENST00000475540 SNRPBP14678 240 aaKnown RBP13.11□□□□□ -0.31
SMC5-203ENST00000475540 EML3Q32P44 896 aa13.11□□□□□ -0.31
SMC5-203ENST00000475540 KDF1Q8NAX2 398 aaPredicted RBP13.11□□□□□ -0.31
SMC5-203ENST00000475540 TBC1D9Q6ZT07 1266 aa13.1□□□□□ -0.31
SMC5-203ENST00000475540 UCN2Q96RP3 112 aa13.1□□□□□ -0.31
SMC5-203ENST00000475540 ATP9BO43861 1147 aa13.09□□□□□ -0.31
SMC5-203ENST00000475540 INSM2Q96T92 566 aaPredicted RBP13.09□□□□□ -0.31
SMC5-203ENST00000475540 TTLL8A6PVC2 850 aa13.08□□□□□ -0.32
SMC5-203ENST00000475540 USP17L5A8MUK1 530 aa13.08□□□□□ -0.32
SMC5-203ENST00000475540 GNRH1P01148 92 aa13.08□□□□□ -0.32
SMC5-203ENST00000475540 POLMQ9NP87 494 aaPredicted RBP13.08□□□□□ -0.32
SMC5-203ENST00000475540 TFIP11Q9UBB9 837 aaKnown RBP13.08□□□□□ -0.32
SMC5-203ENST00000475540 SOS2Q07890 1332 aaPredicted RBP13.08□□□□□ -0.32
SMC5-203ENST00000475540 A0A1W2PRU2 124 aa13.07□□□□□ -0.32
SMC5-203ENST00000475540 MAN1A2O60476 641 aa13.07□□□□□ -0.32
SMC5-203ENST00000475540 NCOA4Q13772 614 aa13.07□□□□□ -0.32
SMC5-203ENST00000475540 DEPDC4Q8N2C3 294 aa13.07□□□□□ -0.32
SMC5-203ENST00000475540 NOD1Q9Y239 953 aa13.07□□□□□ -0.32
SMC5-203ENST00000475540 MEN1O00255 615 aa13.06□□□□□ -0.32
SMC5-203ENST00000475540 CTSOP43234 321 aaPredicted RBP13.05□□□□□ -0.32
SMC5-203ENST00000475540 NLRP3Q96P20 1036 aa13.05□□□□□ -0.32
SMC5-203ENST00000475540 PPP1R12CQ9BZL4 782 aa13.05□□□□□ -0.32
SMC5-203ENST00000475540 FIGNL2A6NMB9 653 aa13.04□□□□□ -0.32
SMC5-203ENST00000475540 PLEKHM2Q8IWE5 1019 aa13.04□□□□□ -0.32
SMC5-203ENST00000475540 ARHGEF10LQ9HCE6 1279 aa13.04□□□□□ -0.32
SMC5-203ENST00000475540 USP17L3A6NCW0 530 aa13.03□□□□□ -0.32
SMC5-203ENST00000475540 USP17L4A6NCW7 530 aa13.03□□□□□ -0.32
SMC5-203ENST00000475540 PALM3A6NDB9 673 aaPredicted RBP13.03□□□□□ -0.32
SMC5-203ENST00000475540 USP17L2Q6R6M4 530 aa13.03□□□□□ -0.32
SMC5-203ENST00000475540 USP17L1Q7RTZ2 530 aa13.03□□□□□ -0.32
SMC5-203ENST00000475540 CLN3Q13286 438 aa13.02□□□□□ -0.33
SMC5-203ENST00000475540 ESCO1Q5FWF5 840 aa13.02□□□□□ -0.33
SMC5-203ENST00000475540 RAB6BQ9NRW1 208 aa13.02□□□□□ -0.33
SMC5-203ENST00000475540 SOBPA7XYQ1 873 aa13.01□□□□□ -0.33
SMC5-203ENST00000475540 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.01□□□□□ -0.33
SMC5-203ENST00000475540 TRIM50Q86XT4 487 aa13.01□□□□□ -0.33
SMC5-203ENST00000475540 DNMT3LQ9UJW3 386 aa13.01□□□□□ -0.33
SMC5-203ENST00000475540 GPC1P35052 558 aa13□□□□□ -0.33
SMC5-203ENST00000475540 RNF144AP50876 292 aaPredicted RBP13□□□□□ -0.33
SMC5-203ENST00000475540 CNKSR1Q969H4 720 aa13□□□□□ -0.33
SMC5-203ENST00000475540 MAFBQ9Y5Q3 323 aaPredicted RBP13□□□□□ -0.33
SMC5-203ENST00000475540 GTF2IP78347 998 aa12.99□□□□□ -0.33
SMC5-203ENST00000475540 ESYT1Q9BSJ8 1104 aa12.99□□□□□ -0.33
SMC5-203ENST00000475540 MKRN1Q9UHC7 482 aaKnown RBP12.99□□□□□ -0.33
SMC5-203ENST00000475540 PCDHGA11Q9Y5H2 935 aa12.99□□□□□ -0.33
SMC5-203ENST00000475540 LMOD1P29536 600 aaPredicted RBP12.98□□□□□ -0.33
SMC5-203ENST00000475540 FOXD4L5Q5VV16 416 aaPredicted RBP12.98□□□□□ -0.33
SMC5-203ENST00000475540 RNF217Q8TC41 542 aa12.98□□□□□ -0.33
SMC5-203ENST00000475540 XAGE2Q96GT9 111 aa12.98□□□□□ -0.33
SMC5-203ENST00000475540 IL2RAP01589 272 aa12.97□□□□□ -0.33
SMC5-203ENST00000475540 ATP1A2P50993 1020 aa12.97□□□□□ -0.33
SMC5-203ENST00000475540 PSME1Q06323 249 aa12.97□□□□□ -0.33
SMC5-203ENST00000475540 SLC27A3Q5K4L6 730 aa12.97□□□□□ -0.33
SMC5-203ENST00000475540 ETNK1Q9HBU6 452 aa12.97□□□□□ -0.33
SMC5-203ENST00000475540 ARID3CA6NKF2 412 aa12.96□□□□□ -0.33
SMC5-203ENST00000475540 GDF10P55107 478 aa12.96□□□□□ -0.33
SMC5-203ENST00000475540 CENPCQ03188 943 aa12.96□□□□□ -0.33
SMC5-203ENST00000475540 LYSMD3Q7Z3D4 306 aa12.96□□□□□ -0.33
SMC5-203ENST00000475540 PRICKLE2Q7Z3G6 844 aa12.95□□□□□ -0.34
SMC5-203ENST00000475540 STAU1O95793 577 aaKnown RBP12.94□□□□□ -0.34
SMC5-203ENST00000475540 INHAP05111 366 aa12.94□□□□□ -0.34
SMC5-203ENST00000475540 GRIP2Q9C0E4 1043 aa12.94□□□□□ -0.34
SMC5-203ENST00000475540 GTF2E1P29083 439 aaPredicted RBP12.93□□□□□ -0.34
SMC5-203ENST00000475540 SCNN1DP51172 638 aa12.93□□□□□ -0.34
SMC5-203ENST00000475540 OGFOD1Q8N543 542 aa12.93□□□□□ -0.34
SMC5-203ENST00000475540 CCDC97Q96F63 343 aaPredicted RBP12.93□□□□□ -0.34
SMC5-203ENST00000475540 VRTNQ9H8Y1 702 aa12.93□□□□□ -0.34
SMC5-203ENST00000475540 DNAAF2Q9NVR5 837 aaKnown RBP12.93□□□□□ -0.34
SMC5-203ENST00000475540 SERPINA10Q9UK55 444 aa12.93□□□□□ -0.34
SMC5-203ENST00000475540 ZNF775Q96BV0 537 aaPredicted RBP12.92□□□□□ -0.34
SMC5-203ENST00000475540 ZSCAN10Q96SZ4 725 aaPredicted RBP12.92□□□□□ -0.34
SMC5-203ENST00000475540 NXF1Q9UBU9 619 aaKnown RBP12.92□□□□□ -0.34
SMC5-203ENST00000475540 WASLO00401 505 aaPredicted RBP12.91□□□□□ -0.34
SMC5-203ENST00000475540 ZBTB7BO15156 539 aaPredicted RBP12.91□□□□□ -0.34
SMC5-203ENST00000475540 RASA1P20936 1047 aa12.91□□□□□ -0.34
SMC5-203ENST00000475540 CFAP70Q5T0N1 1121 aa12.91□□□□□ -0.34
SMC5-203ENST00000475540 LARGE2Q8N3Y3 721 aa12.91□□□□□ -0.34
SMC5-203ENST00000475540 TIMELESSQ9UNS1 1208 aa12.91□□□□□ -0.34
SMC5-203ENST00000475540 HRH3Q9Y5N1 445 aa12.91□□□□□ -0.34
SMC5-203ENST00000475540 TMEM229AB2RXF0 380 aa12.9□□□□□ -0.34
SMC5-203ENST00000475540 RFX1P22670 979 aa12.9□□□□□ -0.34
SMC5-203ENST00000475540 CLDN10P78369 228 aa12.9□□□□□ -0.34
SMC5-203ENST00000475540 PTSQ03393 145 aa12.9□□□□□ -0.34
SMC5-203ENST00000475540 LARP1Q6PKG0 1096 aaKnown RBP12.9□□□□□ -0.34
SMC5-203ENST00000475540 SERTAD1Q9UHV2 236 aa12.9□□□□□ -0.34
SMC5-203ENST00000475540 RBM19Q9Y4C8 960 aaKnown RBP12.9□□□□□ -0.34
SMC5-203ENST00000475540 BACH1O14867 736 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms