RNA–Protein interactions for RNA: ENST00000474648.5

COL8A1-206, Transcript of collagen type VIII alpha 1 chain, humanhuman

TSL 5

Gene COL8A1, Length 841 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1-206ENST00000474648 RGPD5Q99666 1765 aa13.31□□□□□ -0.28
COL8A1-206ENST00000474648 PRKAR2BP31323 418 aa13.31□□□□□ -0.28
COL8A1-206ENST00000474648 CCDC146Q8IYE0 955 aa13.31□□□□□ -0.28
COL8A1-206ENST00000474648 PHACTR3Q96KR7 559 aa13.31□□□□□ -0.28
COL8A1-206ENST00000474648 SPATA31A1Q5TZJ5 1347 aa13.31□□□□□ -0.28
COL8A1-206ENST00000474648 RUNDC1Q96C34 613 aa13.3□□□□□ -0.28
COL8A1-206ENST00000474648 RGPD1P0DJD0 1748 aa13.3□□□□□ -0.28
COL8A1-206ENST00000474648 TCP11L2Q8N4U5 519 aa13.29□□□□□ -0.28
COL8A1-206ENST00000474648 USP35Q9P2H5 1018 aa13.29□□□□□ -0.28
COL8A1-206ENST00000474648 RGS17Q9UGC6 210 aaPredicted RBP13.29□□□□□ -0.28
COL8A1-206ENST00000474648 PNNQ9H307 717 aaKnown RBP13.28□□□□□ -0.28
COL8A1-206ENST00000474648 QTRT2Q9H974 415 aaKnown RBP13.28□□□□□ -0.28
COL8A1-206ENST00000474648 THRAP3Q9Y2W1 955 aaKnown RBP13.28□□□□□ -0.28
COL8A1-206ENST00000474648 ATRNO75882 1429 aa13.28□□□□□ -0.28
COL8A1-206ENST00000474648 PLCH1Q4KWH8 1693 aa13.28□□□□□ -0.28
COL8A1-206ENST00000474648 GJD4Q96KN9 370 aaPredicted RBP13.27□□□□□ -0.29
COL8A1-206ENST00000474648 TRPC5Q9UL62 973 aaPredicted RBP13.27□□□□□ -0.29
COL8A1-206ENST00000474648 NRAPQ86VF7 1730 aa13.27□□□□□ -0.29
COL8A1-206ENST00000474648 NWD2Q9ULI1 1742 aa13.27□□□□□ -0.29
COL8A1-206ENST00000474648 APAF1O14727 1248 aa13.26□□□□□ -0.29
COL8A1-206ENST00000474648 IL2RBP14784 551 aa13.26□□□□□ -0.29
COL8A1-206ENST00000474648 TATP17735 454 aaPredicted RBP13.26□□□□□ -0.29
COL8A1-206ENST00000474648 MTHFSDQ2M296 383 aaKnown RBP13.26□□□□□ -0.29
COL8A1-206ENST00000474648 ZNF772Q68DY9 489 aaPredicted RBP13.26□□□□□ -0.29
COL8A1-206ENST00000474648 BARGINQ6ZT62 677 aa13.26□□□□□ -0.29
COL8A1-206ENST00000474648 RAPGEF4Q8WZA2 1011 aa13.26□□□□□ -0.29
COL8A1-206ENST00000474648 CCDC9Q9Y3X0 531 aaKnown RBP13.26□□□□□ -0.29
COL8A1-206ENST00000474648 FAM208AQ9UK61 1670 aaKnown RBP13.25□□□□□ -0.29
COL8A1-206ENST00000474648 DISP2A7MBM2 1401 aa13.25□□□□□ -0.29
COL8A1-206ENST00000474648 SENP3-EIF4A1A0A087X0R7 540 aa13.25□□□□□ -0.29
COL8A1-206ENST00000474648 ONECUT3O60422 494 aaPredicted RBP13.25□□□□□ -0.29
COL8A1-206ENST00000474648 PLEKHO1Q53GL0 409 aaPredicted RBP13.25□□□□□ -0.29
COL8A1-206ENST00000474648 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.25□□□□□ -0.29
COL8A1-206ENST00000474648 RGPD2P0DJD1 1756 aa13.25□□□□□ -0.29
COL8A1-206ENST00000474648 MEGF6O75095 1541 aa13.24□□□□□ -0.29
COL8A1-206ENST00000474648 TMPOP42166 694 aaKnown RBP13.24□□□□□ -0.29
COL8A1-206ENST00000474648 MAPK8IP3Q9UPT6 1336 aa13.23□□□□□ -0.29
COL8A1-206ENST00000474648 NFE2L2Q16236 605 aa13.23□□□□□ -0.29
COL8A1-206ENST00000474648 FAM98CQ17RN3 349 aaKnown RBP13.23□□□□□ -0.29
COL8A1-206ENST00000474648 AMOTQ4VCS5 1084 aa13.23□□□□□ -0.29
COL8A1-206ENST00000474648 ZCRB1Q8TBF4 217 aaKnown RBP13.23□□□□□ -0.29
COL8A1-206ENST00000474648 CDCA7Q9BWT1 371 aaPredicted RBP13.23□□□□□ -0.29
COL8A1-206ENST00000474648 RRP7AQ9Y3A4 280 aaKnown RBP13.23□□□□□ -0.29
COL8A1-206ENST00000474648 OVOS2A0A0G2JMS6 1433 aa13.22□□□□□ -0.29
COL8A1-206ENST00000474648 PLEKHG2Q9H7P9 1386 aa13.22□□□□□ -0.29
COL8A1-206ENST00000474648 SPDYE2BA6NHP3 402 aa13.22□□□□□ -0.29
COL8A1-206ENST00000474648 SPDYE6P0CI01 402 aa13.22□□□□□ -0.29
COL8A1-206ENST00000474648 SPDYE2Q495Y8 402 aa13.22□□□□□ -0.29
COL8A1-206ENST00000474648 POTEAQ6S8J7 498 aa13.22□□□□□ -0.29
COL8A1-206ENST00000474648 GAS2L2Q8NHY3 880 aa13.22□□□□□ -0.29
COL8A1-206ENST00000474648 SPG7Q9UQ90 795 aa13.22□□□□□ -0.29
COL8A1-206ENST00000474648 CYP27B1O15528 508 aa13.21□□□□□ -0.29
COL8A1-206ENST00000474648 NEFMP07197 916 aa13.21□□□□□ -0.29
COL8A1-206ENST00000474648 RIPK4P57078 832 aa13.21□□□□□ -0.29
COL8A1-206ENST00000474648 RBM6P78332 1123 aaKnown RBP13.21□□□□□ -0.29
COL8A1-206ENST00000474648 TRIM35Q9UPQ4 493 aa13.21□□□□□ -0.29
COL8A1-206ENST00000474648 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.21□□□□□ -0.3
COL8A1-206ENST00000474648 EXOC5O00471 708 aa13.2□□□□□ -0.3
COL8A1-206ENST00000474648 HNRNPUQ00839 825 aaKnown RBP eCLIP13.2□□□□□ -0.3
COL8A1-206ENST00000474648 NEUROD2Q15784 382 aa13.2□□□□□ -0.3
COL8A1-206ENST00000474648 ZNF530Q6P9A1 599 aaPredicted RBP13.2□□□□□ -0.3
COL8A1-206ENST00000474648 AKT1S1Q96B36 256 aa13.2□□□□□ -0.3
COL8A1-206ENST00000474648 GLI3P10071 1580 aa13.2□□□□□ -0.3
COL8A1-206ENST00000474648 PHKG2P15735 406 aa13.19□□□□□ -0.3
COL8A1-206ENST00000474648 AKAP4Q5JQC9 854 aa13.19□□□□□ -0.3
COL8A1-206ENST00000474648 SALL2Q9Y467 1007 aaPredicted RBP13.19□□□□□ -0.3
COL8A1-206ENST00000474648 HTATSF1O43719 755 aaKnown RBP13.18□□□□□ -0.3
COL8A1-206ENST00000474648 RXRBP28702 533 aa13.18□□□□□ -0.3
COL8A1-206ENST00000474648 NKX1-1Q15270 411 aaPredicted RBP13.18□□□□□ -0.3
COL8A1-206ENST00000474648 DDB1Q16531 1140 aa13.18□□□□□ -0.3
COL8A1-206ENST00000474648 CCDC27Q2M243 656 aa13.18□□□□□ -0.3
COL8A1-206ENST00000474648 SEPT12Q8IYM1 358 aa13.18□□□□□ -0.3
COL8A1-206ENST00000474648 IFNL2Q8IZJ0 200 aa13.18□□□□□ -0.3
COL8A1-206ENST00000474648 NGEFQ8N5V2 710 aa13.18□□□□□ -0.3
COL8A1-206ENST00000474648 IL17REQ8NFR9 667 aa13.18□□□□□ -0.3
COL8A1-206ENST00000474648 DDX54Q8TDD1 881 aaKnown RBP13.18□□□□□ -0.3
COL8A1-206ENST00000474648 ZNF521Q96K83 1311 aa13.17□□□□□ -0.3
COL8A1-206ENST00000474648 GNAT3A8MTJ3 354 aa13.17□□□□□ -0.3
COL8A1-206ENST00000474648 WWC1Q8IX03 1113 aa13.17□□□□□ -0.3
COL8A1-206ENST00000474648 MARCH10Q8NA82 808 aaPredicted RBP13.17□□□□□ -0.3
COL8A1-206ENST00000474648 YTHDC1Q96MU7 727 aaKnown RBP13.17□□□□□ -0.3
COL8A1-206ENST00000474648 LGR6Q9HBX8 967 aa13.17□□□□□ -0.3
COL8A1-206ENST00000474648 DCTN1Q14203 1278 aa13.16□□□□□ -0.3
COL8A1-206ENST00000474648 MPRIPQ6WCQ1 1025 aa13.16□□□□□ -0.3
COL8A1-206ENST00000474648 PCDH11XQ9BZA7 1347 aa13.15□□□□□ -0.3
COL8A1-206ENST00000474648 PCDH11YQ9BZA8 1340 aa13.15□□□□□ -0.3
COL8A1-206ENST00000474648 RNMTO43148 476 aaKnown RBP13.15□□□□□ -0.3
COL8A1-206ENST00000474648 C1orf141Q5JVX7 400 aa13.15□□□□□ -0.3
COL8A1-206ENST00000474648 MCM10Q7L590 875 aa13.15□□□□□ -0.3
COL8A1-206ENST00000474648 THUMPD2Q9BTF0 503 aaKnown RBP13.15□□□□□ -0.3
COL8A1-206ENST00000474648 MAP3K5Q99683 1374 aa13.15□□□□□ -0.3
COL8A1-206ENST00000474648 LMOD3Q0VAK6 560 aa13.14□□□□□ -0.31
COL8A1-206ENST00000474648 ZBED9Q6R2W3 1325 aa13.13□□□□□ -0.31
COL8A1-206ENST00000474648 TNS2Q63HR2 1409 aa13.13□□□□□ -0.31
COL8A1-206ENST00000474648 THSD7AQ9UPZ6 1657 aa13.13□□□□□ -0.31
COL8A1-206ENST00000474648 CEMIPQ8WUJ3 1361 aa13.13□□□□□ -0.31
COL8A1-206ENST00000474648 A0A0G2JS52 829 aa13.13□□□□□ -0.31
COL8A1-206ENST00000474648 HSP90AB1P08238 724 aaKnown RBP13.13□□□□□ -0.31
COL8A1-206ENST00000474648 MYT1Q01538 1121 aa13.13□□□□□ -0.31
COL8A1-206ENST00000474648 PDE3BQ13370 1112 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms