RNA–Protein interactions for RNA: ENST00000474254.5

CPA4-205, Transcript of carboxypeptidase A4, humanhuman

TSL 1 (best)

Gene CPA4, Length 1,026 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPA4-205ENST00000474254 DOT1LQ8TEK3 1739 aa22.56■■□□□ 1.2
CPA4-205ENST00000474254 SHANK3Q9BYB0 1731 aa22.55■■□□□ 1.2
CPA4-205ENST00000474254 FBLN1P23142 703 aa22.55■■□□□ 1.2
CPA4-205ENST00000474254 FHDC1Q9C0D6 1143 aaPredicted RBP22.54■■□□□ 1.2
CPA4-205ENST00000474254 RRS1Q15050 365 aaKnown RBP22.53■■□□□ 1.2
CPA4-205ENST00000474254 SYTL4Q96C24 671 aaPredicted RBP22.53■■□□□ 1.2
CPA4-205ENST00000474254 QSER1Q2KHR3 1735 aa22.52■■□□□ 1.2
CPA4-205ENST00000474254 ZNF827Q17R98 1081 aa22.52■■□□□ 1.2
CPA4-205ENST00000474254 SLC27A3Q5K4L6 730 aa22.52■■□□□ 1.2
CPA4-205ENST00000474254 POLR3GLQ9BT43 218 aa22.52■■□□□ 1.2
CPA4-205ENST00000474254 KIF24Q5T7B8 1368 aa22.51■■□□□ 1.19
CPA4-205ENST00000474254 SMG6Q86US8 1419 aaKnown RBP22.51■■□□□ 1.19
CPA4-205ENST00000474254 SYT17Q9BSW7 474 aa22.51■■□□□ 1.19
CPA4-205ENST00000474254 ARXQ96QS3 562 aa22.5■■□□□ 1.19
CPA4-205ENST00000474254 LRRC4BQ9NT99 713 aa22.5■■□□□ 1.19
CPA4-205ENST00000474254 CGNL1Q0VF96 1302 aa22.5■■□□□ 1.19
CPA4-205ENST00000474254 FLT4P35916 1363 aa22.5■■□□□ 1.19
CPA4-205ENST00000474254 ZCRB1Q8TBF4 217 aaKnown RBP22.49■■□□□ 1.19
CPA4-205ENST00000474254 SGIP1Q9BQI5 828 aa22.49■■□□□ 1.19
CPA4-205ENST00000474254 MEGF6O75095 1541 aa22.48■■□□□ 1.19
CPA4-205ENST00000474254 INSRP06213 1382 aa22.48■■□□□ 1.19
CPA4-205ENST00000474254 LY75O60449 1722 aa22.48■■□□□ 1.19
CPA4-205ENST00000474254 PRIM1P49642 420 aaKnown RBP22.47■■□□□ 1.19
CPA4-205ENST00000474254 TUBGCP6Q96RT7 1819 aa22.46■■□□□ 1.19
CPA4-205ENST00000474254 AKT1S1Q96B36 256 aa22.46■■□□□ 1.19
CPA4-205ENST00000474254 CHD4Q14839 1912 aa22.45■■□□□ 1.18
CPA4-205ENST00000474254 POLD1P28340 1107 aa22.45■■□□□ 1.18
CPA4-205ENST00000474254 SLC16A10Q8TF71 515 aa22.45■■□□□ 1.18
CPA4-205ENST00000474254 RAPGEF4Q8WZA2 1011 aa22.45■■□□□ 1.18
CPA4-205ENST00000474254 TFCP2L1Q9NZI6 479 aa22.45■■□□□ 1.18
CPA4-205ENST00000474254 MAP3K5Q99683 1374 aa22.44■■□□□ 1.18
CPA4-205ENST00000474254 NBPF6Q5VWK0 638 aa22.43■■□□□ 1.18
CPA4-205ENST00000474254 KLHL34Q8N239 644 aa22.43■■□□□ 1.18
CPA4-205ENST00000474254 USHBP1Q8N6Y0 703 aa22.43■■□□□ 1.18
CPA4-205ENST00000474254 NBPF4Q96M43 638 aa22.43■■□□□ 1.18
CPA4-205ENST00000474254 NSD2O96028 1365 aa22.42■■□□□ 1.18
CPA4-205ENST00000474254 TATP17735 454 aaPredicted RBP22.42■■□□□ 1.18
CPA4-205ENST00000474254 HSP90AB2PQ58FF8 381 aa22.42■■□□□ 1.18
CPA4-205ENST00000474254 EMILIN1Q9Y6C2 1016 aa22.42■■□□□ 1.18
CPA4-205ENST00000474254 PKD1L3Q7Z443 1732 aa22.42■■□□□ 1.18
CPA4-205ENST00000474254 PNPLA7Q6ZV29 1317 aa22.41■■□□□ 1.18
CPA4-205ENST00000474254 KCNQ4P56696 695 aa22.41■■□□□ 1.18
CPA4-205ENST00000474254 PANK3Q9H999 370 aa22.41■■□□□ 1.18
CPA4-205ENST00000474254 CCNL1Q9UK58 526 aaPredicted RBP22.41■■□□□ 1.18
CPA4-205ENST00000474254 COL24A1Q17RW2 1714 aa22.4■■□□□ 1.18
CPA4-205ENST00000474254 NCAPD2Q15021 1401 aa22.4■■□□□ 1.18
CPA4-205ENST00000474254 KIF7Q2M1P5 1343 aa22.38■■□□□ 1.17
CPA4-205ENST00000474254 PCDH11XQ9BZA7 1347 aa22.38■■□□□ 1.17
CPA4-205ENST00000474254 PCDH11YQ9BZA8 1340 aa22.38■■□□□ 1.17
CPA4-205ENST00000474254 GPR162Q16538 588 aa22.37■■□□□ 1.17
CPA4-205ENST00000474254 MSH5O43196 834 aa22.36■■□□□ 1.17
CPA4-205ENST00000474254 ZNF784Q8NCA9 323 aaPredicted RBP22.36■■□□□ 1.17
CPA4-205ENST00000474254 C5P01031 1676 aa22.36■■□□□ 1.17
CPA4-205ENST00000474254 WASHC2AQ641Q2 1341 aa22.35■■□□□ 1.17
CPA4-205ENST00000474254 HMGB2P26583 209 aaKnown RBP22.34■■□□□ 1.17
CPA4-205ENST00000474254 POLKQ9UBT6 870 aa22.34■■□□□ 1.17
CPA4-205ENST00000474254 UTRNP46939 3433 aa22.33■■□□□ 1.17
CPA4-205ENST00000474254 PPM1GO15355 546 aaPredicted RBP22.33■■□□□ 1.17
CPA4-205ENST00000474254 PELP1Q8IZL8 1130 aaKnown RBP22.33■■□□□ 1.17
CPA4-205ENST00000474254 TOGARAM1Q9Y4F4 1720 aa22.31■■□□□ 1.16
CPA4-205ENST00000474254 ITGB4P16144 1822 aa22.31■■□□□ 1.16
CPA4-205ENST00000474254 TNNT2P45379 298 aaPredicted RBP22.31■■□□□ 1.16
CPA4-205ENST00000474254 TAF1LQ8IZX4 1826 aa22.31■■□□□ 1.16
CPA4-205ENST00000474254 PALLDQ8WX93 1383 aa22.3■■□□□ 1.16
CPA4-205ENST00000474254 MPRIPQ6WCQ1 1025 aa22.3■■□□□ 1.16
CPA4-205ENST00000474254 KNSTRNQ9Y448 316 aa22.29■■□□□ 1.16
CPA4-205ENST00000474254 COL23A1Q86Y22 540 aaPredicted RBP22.28■■□□□ 1.16
CPA4-205ENST00000474254 CYP27B1O15528 508 aa22.26■■□□□ 1.15
CPA4-205ENST00000474254 AMER1Q5JTC6 1135 aaPredicted RBP22.26■■□□□ 1.15
CPA4-205ENST00000474254 FLAD1Q8NFF5 587 aa22.26■■□□□ 1.15
CPA4-205ENST00000474254 NLGN2Q8NFZ4 835 aa22.26■■□□□ 1.15
CPA4-205ENST00000474254 SMARCC1Q92922 1105 aaPredicted RBP22.26■■□□□ 1.15
CPA4-205ENST00000474254 EIF4A2Q14240 407 aaKnown RBP22.25■■□□□ 1.15
CPA4-205ENST00000474254 MSL1Q68DK7 614 aa22.25■■□□□ 1.15
CPA4-205ENST00000474254 MORC1Q86VD1 984 aa22.25■■□□□ 1.15
CPA4-205ENST00000474254 EYA1Q99502 592 aa22.25■■□□□ 1.15
CPA4-205ENST00000474254 SPG7Q9UQ90 795 aa22.25■■□□□ 1.15
CPA4-205ENST00000474254 C4BP0C0L5 1744 aa22.25■■□□□ 1.15
CPA4-205ENST00000474254 PLEKHG2Q9H7P9 1386 aa22.24■■□□□ 1.15
CPA4-205ENST00000474254 AK7Q96M32 723 aa22.23■■□□□ 1.15
CPA4-205ENST00000474254 IGSF1Q8N6C5 1336 aa22.22■■□□□ 1.15
CPA4-205ENST00000474254 PER1O15534 1290 aaPredicted RBP22.21■■□□□ 1.15
CPA4-205ENST00000474254 GRIN3BO60391 1043 aa22.2■■□□□ 1.14
CPA4-205ENST00000474254 PIGBQ92521 554 aa22.19■■□□□ 1.14
CPA4-205ENST00000474254 UBR3Q6ZT12 1888 aa22.19■■□□□ 1.14
CPA4-205ENST00000474254 NKX1-1Q15270 411 aaPredicted RBP22.18■■□□□ 1.14
CPA4-205ENST00000474254 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.18■■□□□ 1.14
CPA4-205ENST00000474254 TMOD3Q9NYL9 352 aa22.18■■□□□ 1.14
CPA4-205ENST00000474254 NPC1L1Q9UHC9 1359 aa22.17■■□□□ 1.14
CPA4-205ENST00000474254 GOLGB1Q14789 3259 aaKnown RBP22.16■■□□□ 1.14
CPA4-205ENST00000474254 PHF14O94880 888 aa22.16■■□□□ 1.14
CPA4-205ENST00000474254 C1QTNF8P60827 252 aa22.16■■□□□ 1.14
CPA4-205ENST00000474254 IFNL2Q8IZJ0 200 aa22.16■■□□□ 1.14
CPA4-205ENST00000474254 CD2APQ9Y5K6 639 aa22.16■■□□□ 1.14
CPA4-205ENST00000474254 SENP3-EIF4A1A0A087X0R7 540 aa22.15■■□□□ 1.14
CPA4-205ENST00000474254 GIGYF1O75420 1035 aaPredicted RBP22.15■■□□□ 1.14
CPA4-205ENST00000474254 YBX3P16989 372 aaKnown RBP eCLIP22.15■■□□□ 1.14
CPA4-205ENST00000474254 LOC102724428A0A0B4J2F2 783 aa22.14■■□□□ 1.13
CPA4-205ENST00000474254 SIK1P57059 783 aa22.14■■□□□ 1.13
CPA4-205ENST00000474254 VIRMAQ69YN4 1812 aaKnown RBP22.14■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms