RNA–Protein interactions for RNA: ENST00000473916.1

VARS2-206, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 2

Gene VARS2, Length 2,000 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-206ENST00000473916 KRT24Q2M2I5 525 aa23.16■■□□□ 1.3
VARS2-206ENST00000473916 TCERG1O14776 1098 aaKnown RBP23.15■■□□□ 1.3
VARS2-206ENST00000473916 NOB1Q9ULX3 412 aaKnown RBP23.15■■□□□ 1.3
VARS2-206ENST00000473916 ZKSCAN2Q63HK3 967 aa23.15■■□□□ 1.3
VARS2-206ENST00000473916 GAS2L2Q8NHY3 880 aa23.15■■□□□ 1.3
VARS2-206ENST00000473916 MIS18AQ9NYP9 233 aa23.15■■□□□ 1.3
VARS2-206ENST00000473916 LRRC37A3O60309 1634 aa23.14■■□□□ 1.29
VARS2-206ENST00000473916 TRIM27P14373 513 aa23.14■■□□□ 1.29
VARS2-206ENST00000473916 SLAIN2Q9P270 581 aa23.14■■□□□ 1.29
VARS2-206ENST00000473916 CHL1O00533 1208 aa23.13■■□□□ 1.29
VARS2-206ENST00000473916 ANKRD24Q8TF21 1146 aa23.13■■□□□ 1.29
VARS2-206ENST00000473916 SPATA31A3Q5VYP0 1347 aa23.13■■□□□ 1.29
VARS2-206ENST00000473916 KDM2BQ8NHM5 1336 aa23.13■■□□□ 1.29
VARS2-206ENST00000473916 TWISTNBQ3B726 338 aaPredicted RBP23.13■■□□□ 1.29
VARS2-206ENST00000473916 RTF1Q92541 710 aaKnown RBP23.12■■□□□ 1.29
VARS2-206ENST00000473916 COL18A1P39060 1754 aa23.12■■□□□ 1.29
VARS2-206ENST00000473916 ALDH1L2Q3SY69 923 aa23.11■■□□□ 1.29
VARS2-206ENST00000473916 CAMTA1Q9Y6Y1 1673 aa23.11■■□□□ 1.29
VARS2-206ENST00000473916 DZIP1LQ8IYY4 767 aaKnown RBP23.1■■□□□ 1.29
VARS2-206ENST00000473916 MAP3K5Q99683 1374 aa23.1■■□□□ 1.29
VARS2-206ENST00000473916 ATF7IPQ6VMQ6 1270 aa23.09■■□□□ 1.29
VARS2-206ENST00000473916 GNAT3A8MTJ3 354 aa23.09■■□□□ 1.29
VARS2-206ENST00000473916 FTSJ3Q8IY81 847 aaKnown RBP23.09■■□□□ 1.29
VARS2-206ENST00000473916 MRPL50Q8N5N7 158 aaKnown RBP23.08■■□□□ 1.29
VARS2-206ENST00000473916 NCAPD2Q15021 1401 aa23.08■■□□□ 1.29
VARS2-206ENST00000473916 IL17REQ8NFR9 667 aa23.08■■□□□ 1.28
VARS2-206ENST00000473916 KIF16BQ96L93 1317 aa23.07■■□□□ 1.28
VARS2-206ENST00000473916 MVPQ14764 893 aaKnown RBP23.07■■□□□ 1.28
VARS2-206ENST00000473916 CHRNA2Q15822 529 aa23.07■■□□□ 1.28
VARS2-206ENST00000473916 ERBB3P21860 1342 aa23.07■■□□□ 1.28
VARS2-206ENST00000473916 VIRMAQ69YN4 1812 aaKnown RBP23.06■■□□□ 1.28
VARS2-206ENST00000473916 LMO7Q8WWI1 1683 aa23.06■■□□□ 1.28
VARS2-206ENST00000473916 IGHDP01880 384 aa23.06■■□□□ 1.28
VARS2-206ENST00000473916 ZNF428Q96B54 188 aa23.06■■□□□ 1.28
VARS2-206ENST00000473916 RBM19Q9Y4C8 960 aaKnown RBP23.05■■□□□ 1.28
VARS2-206ENST00000473916 TSPYL4Q9UJ04 414 aa23.04■■□□□ 1.28
VARS2-206ENST00000473916 SOS2Q07890 1332 aaPredicted RBP23.04■■□□□ 1.28
VARS2-206ENST00000473916 KIAA0232Q92628 1395 aa23.04■■□□□ 1.28
VARS2-206ENST00000473916 CENPQQ7L2Z9 268 aaPredicted RBP23.04■■□□□ 1.28
VARS2-206ENST00000473916 TMEM57Q8N5G2 664 aa23.04■■□□□ 1.28
VARS2-206ENST00000473916 HTATSF1O43719 755 aaKnown RBP23.03■■□□□ 1.28
VARS2-206ENST00000473916 BRPF1P55201 1214 aaPredicted RBP23.03■■□□□ 1.28
VARS2-206ENST00000473916 PCDHB15Q9Y5E8 787 aa23.03■■□□□ 1.28
VARS2-206ENST00000473916 ITPRIPQ8IWB1 547 aa23.03■■□□□ 1.28
VARS2-206ENST00000473916 FAM208AQ9UK61 1670 aaKnown RBP23.02■■□□□ 1.28
VARS2-206ENST00000473916 NHSL1Q5SYE7 1610 aa23.02■■□□□ 1.28
VARS2-206ENST00000473916 ABCA3Q99758 1704 aa23.02■■□□□ 1.28
VARS2-206ENST00000473916 LGR6Q9HBX8 967 aa23.01■■□□□ 1.27
VARS2-206ENST00000473916 IPO8O15397 1037 aaKnown RBP23■■□□□ 1.27
VARS2-206ENST00000473916 ZNF530Q6P9A1 599 aaPredicted RBP23■■□□□ 1.27
VARS2-206ENST00000473916 MS4A1P11836 297 aa22.99■■□□□ 1.27
VARS2-206ENST00000473916 NLRP2Q9NX02 1062 aa22.99■■□□□ 1.27
VARS2-206ENST00000473916 CEMIPQ8WUJ3 1361 aa22.98■■□□□ 1.27
VARS2-206ENST00000473916 CPDO75976 1380 aa22.97■■□□□ 1.27
VARS2-206ENST00000473916 PLEKHO1Q53GL0 409 aaPredicted RBP22.96■■□□□ 1.27
VARS2-206ENST00000473916 MPRIPQ6WCQ1 1025 aa22.96■■□□□ 1.27
VARS2-206ENST00000473916 MEGF6O75095 1541 aa22.95■■□□□ 1.26
VARS2-206ENST00000473916 ABCC6O95255 1503 aa22.95■■□□□ 1.26
VARS2-206ENST00000473916 CSB-PGBD3P0DP91 1061 aa22.94■■□□□ 1.26
VARS2-206ENST00000473916 TAF7Q15545 349 aaPredicted RBP22.94■■□□□ 1.26
VARS2-206ENST00000473916 AKAP4Q5JQC9 854 aa22.94■■□□□ 1.26
VARS2-206ENST00000473916 ARHGAP45Q92619 1136 aa22.94■■□□□ 1.26
VARS2-206ENST00000473916 DDX19BQ9UMR2 479 aa22.94■■□□□ 1.26
VARS2-206ENST00000473916 KDM3BQ7LBC6 1761 aa22.93■■□□□ 1.26
VARS2-206ENST00000473916 ABCC4O15439 1325 aa22.93■■□□□ 1.26
VARS2-206ENST00000473916 AMOTQ4VCS5 1084 aa22.93■■□□□ 1.26
VARS2-206ENST00000473916 ROBO1Q9Y6N7 1651 aa22.92■■□□□ 1.26
VARS2-206ENST00000473916 RGS12O14924 1447 aa22.92■■□□□ 1.26
VARS2-206ENST00000473916 AAMPQ13685 434 aa22.92■■□□□ 1.26
VARS2-206ENST00000473916 LTBP4Q8N2S1 1624 aa22.92■■□□□ 1.26
VARS2-206ENST00000473916 PRDM11Q9NQV5 511 aa22.91■■□□□ 1.26
VARS2-206ENST00000473916 ZBTB40Q9NUA8 1239 aa22.91■■□□□ 1.26
VARS2-206ENST00000473916 C1orf141Q5JVX7 400 aa22.9■■□□□ 1.26
VARS2-206ENST00000473916 NECTIN2Q92692 538 aa22.9■■□□□ 1.26
VARS2-206ENST00000473916 RNMTO43148 476 aaKnown RBP22.89■■□□□ 1.26
VARS2-206ENST00000473916 KCNQ3O43525 872 aa22.89■■□□□ 1.26
VARS2-206ENST00000473916 HAP1P54257 671 aaPredicted RBP22.89■■□□□ 1.26
VARS2-206ENST00000473916 SIPA1L3O60292 1781 aaPredicted RBP22.89■■□□□ 1.25
VARS2-206ENST00000473916 SLC4A2P04920 1241 aa22.89■■□□□ 1.25
VARS2-206ENST00000473916 G2E3Q7L622 706 aa22.89■■□□□ 1.25
VARS2-206ENST00000473916 RAPGEF4Q8WZA2 1011 aa22.89■■□□□ 1.25
VARS2-206ENST00000473916 RGS3P49796 1198 aa22.88■■□□□ 1.25
VARS2-206ENST00000473916 API5Q9BZZ5 524 aaKnown RBP22.87■■□□□ 1.25
VARS2-206ENST00000473916 ADAMTS7Q9UKP4 1686 aa22.87■■□□□ 1.25
VARS2-206ENST00000473916 ZBTB7BO15156 539 aaPredicted RBP22.86■■□□□ 1.25
VARS2-206ENST00000473916 SCN11AQ9UI33 1791 aa22.86■■□□□ 1.25
VARS2-206ENST00000473916 TEFQ10587 303 aa22.86■■□□□ 1.25
VARS2-206ENST00000473916 C1orf115Q9H7X2 142 aa22.86■■□□□ 1.25
VARS2-206ENST00000473916 BABAM1Q9NWV8 329 aa22.86■■□□□ 1.25
VARS2-206ENST00000473916 COL5A2P05997 1499 aaPredicted RBP22.85■■□□□ 1.25
VARS2-206ENST00000473916 PKD1L3Q7Z443 1732 aa22.85■■□□□ 1.25
VARS2-206ENST00000473916 TATP17735 454 aaPredicted RBP22.85■■□□□ 1.25
VARS2-206ENST00000473916 RWDD1Q9H446 243 aaPredicted RBP22.84■■□□□ 1.25
VARS2-206ENST00000473916 KDM6AO15550 1401 aaPredicted RBP22.83■■□□□ 1.25
VARS2-206ENST00000473916 BTBD11A6QL63 1104 aa22.83■■□□□ 1.25
VARS2-206ENST00000473916 EIF4A1P60842 406 aaKnown RBP22.83■■□□□ 1.25
VARS2-206ENST00000473916 CACNA1FO60840 1977 aa22.82■■□□□ 1.24
VARS2-206ENST00000473916 WDR17Q8IZU2 1322 aa22.82■■□□□ 1.24
VARS2-206ENST00000473916 OVOS2A0A0G2JMS6 1433 aa22.82■■□□□ 1.24
VARS2-206ENST00000473916 PTPRCP08575 1304 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms