RNA–Protein interactions for RNA: ENST00000473911.1

CLIC3-201, Transcript of chloride intracellular channel 3, humanhuman

TSL 5

Gene CLIC3, Length 732 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC3-201ENST00000473911 FHDC1Q9C0D6 1143 aaPredicted RBP21.57■■□□□ 1.04
CLIC3-201ENST00000473911 SYT17Q9BSW7 474 aa21.55■■□□□ 1.04
CLIC3-201ENST00000473911 MTFR1LQ9H019 292 aa21.54■■□□□ 1.04
CLIC3-201ENST00000473911 SMG6Q86US8 1419 aaKnown RBP21.54■■□□□ 1.04
CLIC3-201ENST00000473911 RGPD2P0DJD1 1756 aa21.53■■□□□ 1.04
CLIC3-201ENST00000473911 DDX54Q8TDD1 881 aaKnown RBP21.53■■□□□ 1.04
CLIC3-201ENST00000473911 CGNL1Q0VF96 1302 aa21.53■■□□□ 1.04
CLIC3-201ENST00000473911 KCNQ4P56696 695 aa21.52■■□□□ 1.04
CLIC3-201ENST00000473911 FAM208AQ9UK61 1670 aaKnown RBP21.5■■□□□ 1.03
CLIC3-201ENST00000473911 KIF20BQ96Q89 1820 aa21.5■■□□□ 1.03
CLIC3-201ENST00000473911 FLT4P35916 1363 aa21.49■■□□□ 1.03
CLIC3-201ENST00000473911 HSP90AB2PQ58FF8 381 aa21.49■■□□□ 1.03
CLIC3-201ENST00000473911 NBPF6Q5VWK0 638 aa21.49■■□□□ 1.03
CLIC3-201ENST00000473911 USHBP1Q8N6Y0 703 aa21.49■■□□□ 1.03
CLIC3-201ENST00000473911 NBPF4Q96M43 638 aa21.49■■□□□ 1.03
CLIC3-201ENST00000473911 INSRP06213 1382 aa21.48■■□□□ 1.03
CLIC3-201ENST00000473911 PPM1GO15355 546 aaPredicted RBP21.48■■□□□ 1.03
CLIC3-201ENST00000473911 AKT1S1Q96B36 256 aa21.48■■□□□ 1.03
CLIC3-201ENST00000473911 SHANK3Q9BYB0 1731 aa21.48■■□□□ 1.03
CLIC3-201ENST00000473911 KIF24Q5T7B8 1368 aa21.48■■□□□ 1.03
CLIC3-201ENST00000473911 GOLGB1Q14789 3259 aaKnown RBP21.47■■□□□ 1.03
CLIC3-201ENST00000473911 ZCRB1Q8TBF4 217 aaKnown RBP21.47■■□□□ 1.03
CLIC3-201ENST00000473911 RAPGEF4Q8WZA2 1011 aa21.47■■□□□ 1.03
CLIC3-201ENST00000473911 ARXQ96QS3 562 aa21.47■■□□□ 1.03
CLIC3-201ENST00000473911 EMILIN1Q9Y6C2 1016 aa21.47■■□□□ 1.03
CLIC3-201ENST00000473911 TUBGCP6Q96RT7 1819 aa21.46■■□□□ 1.03
CLIC3-201ENST00000473911 PRIM1P49642 420 aaKnown RBP21.46■■□□□ 1.03
CLIC3-201ENST00000473911 ZNF784Q8NCA9 323 aaPredicted RBP21.45■■□□□ 1.02
CLIC3-201ENST00000473911 DOT1LQ8TEK3 1739 aa21.45■■□□□ 1.02
CLIC3-201ENST00000473911 NSD2O96028 1365 aa21.45■■□□□ 1.02
CLIC3-201ENST00000473911 MEGF6O75095 1541 aa21.45■■□□□ 1.02
CLIC3-201ENST00000473911 TATP17735 454 aaPredicted RBP21.44■■□□□ 1.02
CLIC3-201ENST00000473911 PANK3Q9H999 370 aa21.44■■□□□ 1.02
CLIC3-201ENST00000473911 SYTL4Q96C24 671 aaPredicted RBP21.43■■□□□ 1.02
CLIC3-201ENST00000473911 PNPLA7Q6ZV29 1317 aa21.43■■□□□ 1.02
CLIC3-201ENST00000473911 TNNT2P45379 298 aaPredicted RBP21.42■■□□□ 1.02
CLIC3-201ENST00000473911 LY75O60449 1722 aa21.41■■□□□ 1.02
CLIC3-201ENST00000473911 QSER1Q2KHR3 1735 aa21.41■■□□□ 1.02
CLIC3-201ENST00000473911 CHD4Q14839 1912 aa21.4■■□□□ 1.02
CLIC3-201ENST00000473911 COL24A1Q17RW2 1714 aa21.4■■□□□ 1.02
CLIC3-201ENST00000473911 SLC27A3Q5K4L6 730 aa21.39■■□□□ 1.01
CLIC3-201ENST00000473911 MAP3K5Q99683 1374 aa21.38■■□□□ 1.01
CLIC3-201ENST00000473911 WASHC2AQ641Q2 1341 aa21.38■■□□□ 1.01
CLIC3-201ENST00000473911 POLKQ9UBT6 870 aa21.38■■□□□ 1.01
CLIC3-201ENST00000473911 KLHL34Q8N239 644 aa21.37■■□□□ 1.01
CLIC3-201ENST00000473911 PCDH11XQ9BZA7 1347 aa21.36■■□□□ 1.01
CLIC3-201ENST00000473911 PCDH11YQ9BZA8 1340 aa21.36■■□□□ 1.01
CLIC3-201ENST00000473911 TFCP2L1Q9NZI6 479 aa21.36■■□□□ 1.01
CLIC3-201ENST00000473911 NLGN2Q8NFZ4 835 aa21.35■■□□□ 1.01
CLIC3-201ENST00000473911 SLC16A10Q8TF71 515 aa21.34■■□□□ 1.01
CLIC3-201ENST00000473911 KNSTRNQ9Y448 316 aa21.34■■□□□ 1.01
CLIC3-201ENST00000473911 MORC1Q86VD1 984 aa21.33■■□□□ 1.01
CLIC3-201ENST00000473911 EYA1Q99502 592 aa21.33■■□□□ 1.01
CLIC3-201ENST00000473911 CCNL1Q9UK58 526 aaPredicted RBP21.33■■□□□ 1.01
CLIC3-201ENST00000473911 GPR162Q16538 588 aa21.32■■□□□ 1
CLIC3-201ENST00000473911 COL23A1Q86Y22 540 aaPredicted RBP21.32■■□□□ 1
CLIC3-201ENST00000473911 KIF7Q2M1P5 1343 aa21.31■■□□□ 1
CLIC3-201ENST00000473911 SENP3-EIF4A1A0A087X0R7 540 aa21.31■■□□□ 1
CLIC3-201ENST00000473911 POLD1P28340 1107 aa21.3■■□□□ 1
CLIC3-201ENST00000473911 EIF4A2Q14240 407 aaKnown RBP21.3■■□□□ 1
CLIC3-201ENST00000473911 SPG7Q9UQ90 795 aa21.3■■□□□ 1
CLIC3-201ENST00000473911 ANKRD26Q9UPS8 1709 aa21.29■■□□□ 1
CLIC3-201ENST00000473911 CYP27B1O15528 508 aa21.29■■□□□ 1
CLIC3-201ENST00000473911 NCAPD2Q15021 1401 aa21.29■■□□□ 1
CLIC3-201ENST00000473911 MSL1Q68DK7 614 aa21.28■■□□□ 1
CLIC3-201ENST00000473911 PELP1Q8IZL8 1130 aaKnown RBP21.28■■□□□ 1
CLIC3-201ENST00000473911 MSH5O43196 834 aa21.27■■□□□ 1
CLIC3-201ENST00000473911 C1QTNF8P60827 252 aa21.27■■□□□ 1
CLIC3-201ENST00000473911 TOGARAM1Q9Y4F4 1720 aa21.26■□□□□ 0.99
CLIC3-201ENST00000473911 MPRIPQ6WCQ1 1025 aa21.26■□□□□ 0.99
CLIC3-201ENST00000473911 SMIM5Q71RC9 77 aa21.26■□□□□ 0.99
CLIC3-201ENST00000473911 AMIGO3Q86WK7 504 aa21.26■□□□□ 0.99
CLIC3-201ENST00000473911 MAP2P11137 1827 aaKnown RBP21.25■□□□□ 0.99
CLIC3-201ENST00000473911 YBX3P16989 372 aaKnown RBP eCLIP21.25■□□□□ 0.99
CLIC3-201ENST00000473911 TAF1LQ8IZX4 1826 aa21.25■□□□□ 0.99
CLIC3-201ENST00000473911 C5P01031 1676 aa21.24■□□□□ 0.99
CLIC3-201ENST00000473911 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.24■□□□□ 0.99
CLIC3-201ENST00000473911 ITGB4P16144 1822 aa21.23■□□□□ 0.99
CLIC3-201ENST00000473911 AMER1Q5JTC6 1135 aaPredicted RBP21.22■□□□□ 0.99
CLIC3-201ENST00000473911 IGSF1Q8N6C5 1336 aa21.22■□□□□ 0.99
CLIC3-201ENST00000473911 PALLDQ8WX93 1383 aa21.22■□□□□ 0.99
CLIC3-201ENST00000473911 NKX1-1Q15270 411 aaPredicted RBP21.21■□□□□ 0.99
CLIC3-201ENST00000473911 IFNL2Q8IZJ0 200 aa21.21■□□□□ 0.99
CLIC3-201ENST00000473911 PKD1L3Q7Z443 1732 aa21.21■□□□□ 0.99
CLIC3-201ENST00000473911 PHKG2P15735 406 aa21.19■□□□□ 0.98
CLIC3-201ENST00000473911 SMARCC1Q92922 1105 aaPredicted RBP21.19■□□□□ 0.98
CLIC3-201ENST00000473911 CEP350Q5VT06 3117 aa21.19■□□□□ 0.98
CLIC3-201ENST00000473911 PIGBQ92521 554 aa21.18■□□□□ 0.98
CLIC3-201ENST00000473911 TMOD3Q9NYL9 352 aa21.18■□□□□ 0.98
CLIC3-201ENST00000473911 HMGB2P26583 209 aaKnown RBP21.17■□□□□ 0.98
CLIC3-201ENST00000473911 PLEKHO1Q53GL0 409 aaPredicted RBP21.17■□□□□ 0.98
CLIC3-201ENST00000473911 C4BP0C0L5 1744 aa21.17■□□□□ 0.98
CLIC3-201ENST00000473911 PLEKHG2Q9H7P9 1386 aa21.16■□□□□ 0.98
CLIC3-201ENST00000473911 CC2D1BQ5T0F9 858 aaKnown RBP21.16■□□□□ 0.98
CLIC3-201ENST00000473911 UBR3Q6ZT12 1888 aa21.15■□□□□ 0.98
CLIC3-201ENST00000473911 PER1O15534 1290 aaPredicted RBP21.14■□□□□ 0.97
CLIC3-201ENST00000473911 GIGYF1O75420 1035 aaPredicted RBP21.14■□□□□ 0.97
CLIC3-201ENST00000473911 CNGB1Q14028 1251 aaPredicted RBP21.14■□□□□ 0.97
CLIC3-201ENST00000473911 AMOTQ4VCS5 1084 aa21.14■□□□□ 0.97
CLIC3-201ENST00000473911 SULT6B1Q6IMI4 303 aa21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms