RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 AKT1S1Q96B36 256 aa18.84■□□□□ 0.61
CHD3-209ENST00000473376 LRRC4BQ9NT99 713 aa18.84■□□□□ 0.61
CHD3-209ENST00000473376 FBLN1P23142 703 aa18.83■□□□□ 0.6
CHD3-209ENST00000473376 RRS1Q15050 365 aaKnown RBP18.83■□□□□ 0.6
CHD3-209ENST00000473376 NSD2O96028 1365 aa18.82■□□□□ 0.6
CHD3-209ENST00000473376 YY1P25490 414 aa18.82■□□□□ 0.6
CHD3-209ENST00000473376 PRIM1P49642 420 aaKnown RBP18.82■□□□□ 0.6
CHD3-209ENST00000473376 CARD14Q9BXL6 1004 aa18.82■□□□□ 0.6
CHD3-209ENST00000473376 ATF5Q9Y2D1 282 aaPredicted RBP18.82■□□□□ 0.6
CHD3-209ENST00000473376 MEGF6O75095 1541 aa18.82■□□□□ 0.6
CHD3-209ENST00000473376 SYT17Q9BSW7 474 aa18.81■□□□□ 0.6
CHD3-209ENST00000473376 TATP17735 454 aaPredicted RBP18.8■□□□□ 0.6
CHD3-209ENST00000473376 ZNF827Q17R98 1081 aa18.8■□□□□ 0.6
CHD3-209ENST00000473376 PCDH11XQ9BZA7 1347 aa18.79■□□□□ 0.6
CHD3-209ENST00000473376 PCDH11YQ9BZA8 1340 aa18.79■□□□□ 0.6
CHD3-209ENST00000473376 HSP90AB2PQ58FF8 381 aa18.79■□□□□ 0.6
CHD3-209ENST00000473376 ARXQ96QS3 562 aa18.79■□□□□ 0.6
CHD3-209ENST00000473376 PLEKHG2Q9H7P9 1386 aa18.79■□□□□ 0.6
CHD3-209ENST00000473376 QSER1Q2KHR3 1735 aa18.78■□□□□ 0.6
CHD3-209ENST00000473376 NCAPD2Q15021 1401 aa18.78■□□□□ 0.6
CHD3-209ENST00000473376 SYTL4Q96C24 671 aaPredicted RBP18.78■□□□□ 0.6
CHD3-209ENST00000473376 FHDC1Q9C0D6 1143 aaPredicted RBP18.78■□□□□ 0.6
CHD3-209ENST00000473376 WASHC2AQ641Q2 1341 aa18.77■□□□□ 0.6
CHD3-209ENST00000473376 NSD3Q9BZ95 1437 aa18.77■□□□□ 0.6
CHD3-209ENST00000473376 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.77■□□□□ 0.62e-8■■■■□ 21
CHD3-209ENST00000473376 MYOM1P52179 1685 aa18.76■□□□□ 0.59
CHD3-209ENST00000473376 TFCP2L1Q9NZI6 479 aa18.76■□□□□ 0.59
CHD3-209ENST00000473376 SHANK3Q9BYB0 1731 aa18.75■□□□□ 0.59
CHD3-209ENST00000473376 KIF20BQ96Q89 1820 aa18.75■□□□□ 0.59
CHD3-209ENST00000473376 PNPLA7Q6ZV29 1317 aa18.74■□□□□ 0.59
CHD3-209ENST00000473376 LY75O60449 1722 aa18.74■□□□□ 0.59
CHD3-209ENST00000473376 KAT6BQ8WYB5 2073 aa18.74■□□□□ 0.59
CHD3-209ENST00000473376 POLD1P28340 1107 aa18.74■□□□□ 0.59
CHD3-209ENST00000473376 NKX1-1Q15270 411 aaPredicted RBP18.74■□□□□ 0.59
CHD3-209ENST00000473376 CCNL1Q9UK58 526 aaPredicted RBP18.74■□□□□ 0.59
CHD3-209ENST00000473376 COL24A1Q17RW2 1714 aa18.73■□□□□ 0.59
CHD3-209ENST00000473376 DOT1LQ8TEK3 1739 aa18.72■□□□□ 0.59
CHD3-209ENST00000473376 USHBP1Q8N6Y0 703 aa18.72■□□□□ 0.59
CHD3-209ENST00000473376 FLAD1Q8NFF5 587 aa18.72■□□□□ 0.59
CHD3-209ENST00000473376 SMARCC1Q92922 1105 aaPredicted RBP18.72■□□□□ 0.59
CHD3-209ENST00000473376 RGPD2P0DJD1 1756 aa18.72■□□□□ 0.59
CHD3-209ENST00000473376 CYP27B1O15528 508 aa18.71■□□□□ 0.59
CHD3-209ENST00000473376 SPG7Q9UQ90 795 aa18.71■□□□□ 0.59
CHD3-209ENST00000473376 EMILIN1Q9Y6C2 1016 aa18.71■□□□□ 0.59
CHD3-209ENST00000473376 ANKRD26Q9UPS8 1709 aa18.7■□□□□ 0.58
CHD3-209ENST00000473376 EIF4G2P78344 907 aaKnown RBP eCLIP18.69■□□□□ 0.58
CHD3-209ENST00000473376 POLKQ9UBT6 870 aa18.69■□□□□ 0.58
CHD3-209ENST00000473376 PALLDQ8WX93 1383 aa18.67■□□□□ 0.58
CHD3-209ENST00000473376 PKD1L3Q7Z443 1732 aa18.66■□□□□ 0.58
CHD3-209ENST00000473376 EYA1Q99502 592 aa18.66■□□□□ 0.58
CHD3-209ENST00000473376 PCGF6Q9BYE7 350 aa18.66■□□□□ 0.58
CHD3-209ENST00000473376 PPM1GO15355 546 aaPredicted RBP18.65■□□□□ 0.58
CHD3-209ENST00000473376 KCNQ4P56696 695 aa18.65■□□□□ 0.58
CHD3-209ENST00000473376 MPRIPQ6WCQ1 1025 aa18.65■□□□□ 0.58
CHD3-209ENST00000473376 COL23A1Q86Y22 540 aaPredicted RBP18.64■□□□□ 0.57
CHD3-209ENST00000473376 IFNL2Q8IZJ0 200 aa18.63■□□□□ 0.57
CHD3-209ENST00000473376 PIGBQ92521 554 aa18.63■□□□□ 0.57
CHD3-209ENST00000473376 IGSF1Q8N6C5 1336 aa18.61■□□□□ 0.57
CHD3-209ENST00000473376 EIF4A2Q14240 407 aaKnown RBP18.61■□□□□ 0.57
CHD3-209ENST00000473376 ZNF784Q8NCA9 323 aaPredicted RBP18.61■□□□□ 0.57
CHD3-209ENST00000473376 HSP90AB1P08238 724 aaKnown RBP18.6■□□□□ 0.57
CHD3-209ENST00000473376 HSPA5P11021 654 aaKnown RBP18.6■□□□□ 0.57
CHD3-209ENST00000473376 PHKG2P15735 406 aa18.6■□□□□ 0.57
CHD3-209ENST00000473376 GPR162Q16538 588 aa18.6■□□□□ 0.57
CHD3-209ENST00000473376 PANK3Q9H999 370 aa18.6■□□□□ 0.57
CHD3-209ENST00000473376 CD2APQ9Y5K6 639 aa18.6■□□□□ 0.57
CHD3-209ENST00000473376 MAP2P11137 1827 aaKnown RBP18.6■□□□□ 0.57
CHD3-209ENST00000473376 TUBGCP6Q96RT7 1819 aa18.6■□□□□ 0.57
CHD3-209ENST00000473376 GRIN3BO60391 1043 aa18.59■□□□□ 0.57
CHD3-209ENST00000473376 TMOD3Q9NYL9 352 aa18.59■□□□□ 0.57
CHD3-209ENST00000473376 C5P01031 1676 aa18.59■□□□□ 0.57
CHD3-209ENST00000473376 LOC102724428A0A0B4J2F2 783 aa18.58■□□□□ 0.56
CHD3-209ENST00000473376 ERVV-2B6SEH9 535 aa18.58■□□□□ 0.56
CHD3-209ENST00000473376 SSFA2P28290 1259 aa18.58■□□□□ 0.56
CHD3-209ENST00000473376 SIK1P57059 783 aa18.58■□□□□ 0.56
CHD3-209ENST00000473376 AK7Q96M32 723 aa18.58■□□□□ 0.56
CHD3-209ENST00000473376 CHD4Q14839 1912 aa18.57■□□□□ 0.56
CHD3-209ENST00000473376 MSH5O43196 834 aa18.57■□□□□ 0.56
CHD3-209ENST00000473376 AMOTQ4VCS5 1084 aa18.57■□□□□ 0.56
CHD3-209ENST00000473376 DCAF5Q96JK2 942 aa18.57■□□□□ 0.56
CHD3-209ENST00000473376 UTRNP46939 3433 aa18.57■□□□□ 0.56
CHD3-209ENST00000473376 TOGARAM1Q9Y4F4 1720 aa18.57■□□□□ 0.56
CHD3-209ENST00000473376 ITGB4P16144 1822 aa18.56■□□□□ 0.56
CHD3-209ENST00000473376 TAF1LQ8IZX4 1826 aa18.56■□□□□ 0.56
CHD3-209ENST00000473376 C4BP0C0L5 1744 aa18.55■□□□□ 0.56
CHD3-209ENST00000473376 PLEKHO1Q53GL0 409 aaPredicted RBP18.55■□□□□ 0.56
CHD3-209ENST00000473376 CCER1Q8TC90 406 aaPredicted RBP18.55■□□□□ 0.56
CHD3-209ENST00000473376 POLR3GLQ9BT43 218 aa18.54■□□□□ 0.56
CHD3-209ENST00000473376 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.53■□□□□ 0.56
CHD3-209ENST00000473376 MORC1Q86VD1 984 aa18.53■□□□□ 0.56
CHD3-209ENST00000473376 NLGN2Q8NFZ4 835 aa18.53■□□□□ 0.56
CHD3-209ENST00000473376 ASAP1Q9ULH1 1129 aa18.53■□□□□ 0.56
CHD3-209ENST00000473376 KNSTRNQ9Y448 316 aa18.53■□□□□ 0.56
CHD3-209ENST00000473376 TNNT2P45379 298 aaPredicted RBP18.52■□□□□ 0.56
CHD3-209ENST00000473376 KLHL34Q8N239 644 aa18.52■□□□□ 0.56
CHD3-209ENST00000473376 ATG3Q9NT62 314 aa18.52■□□□□ 0.56
CHD3-209ENST00000473376 ZNF831Q5JPB2 1677 aa18.51■□□□□ 0.55
CHD3-209ENST00000473376 ATP6V1AP38606 617 aa18.51■□□□□ 0.55
CHD3-209ENST00000473376 RC3H1Q5TC82 1133 aaKnown RBP18.51■□□□□ 0.55
CHD3-209ENST00000473376 LINC00116Q8NCU8 138 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms