RNA–Protein interactions for RNA: ENST00000472789.1

SMARCD3-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 863 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-208ENST00000472789 IL13P35225 146 aa14.13□□□□□ -0.15
SMARCD3-208ENST00000472789 DDX54Q8TDD1 881 aaKnown RBP14.13□□□□□ -0.15
SMARCD3-208ENST00000472789 RGPD1P0DJD0 1748 aa14.12□□□□□ -0.15
SMARCD3-208ENST00000472789 R3HDM1Q15032 1099 aaKnown RBP14.12□□□□□ -0.15
SMARCD3-208ENST00000472789 ZCRB1Q8TBF4 217 aaKnown RBP14.12□□□□□ -0.15
SMARCD3-208ENST00000472789 WNK3Q9BYP7 1800 aa14.12□□□□□ -0.15
SMARCD3-208ENST00000472789 PARP4Q9UKK3 1724 aaKnown RBP14.12□□□□□ -0.15
SMARCD3-208ENST00000472789 LRRC37A3O60309 1634 aa14.12□□□□□ -0.15
SMARCD3-208ENST00000472789 MEGF6O75095 1541 aa14.11□□□□□ -0.15
SMARCD3-208ENST00000472789 TNS2Q63HR2 1409 aa14.11□□□□□ -0.15
SMARCD3-208ENST00000472789 SULT6B1Q6IMI4 303 aa14.11□□□□□ -0.15
SMARCD3-208ENST00000472789 FAM196AQ6ZSG2 479 aa14.11□□□□□ -0.15
SMARCD3-208ENST00000472789 TNS1Q9HBL0 1735 aaKnown RBP14.11□□□□□ -0.15
SMARCD3-208ENST00000472789 NUDCQ9Y266 331 aa14.11□□□□□ -0.15
SMARCD3-208ENST00000472789 IGSF1Q8N6C5 1336 aa14.11□□□□□ -0.15
SMARCD3-208ENST00000472789 HMOX1P09601 288 aa14.1□□□□□ -0.15
SMARCD3-208ENST00000472789 AEBP1Q8IUX7 1158 aa14.1□□□□□ -0.15
SMARCD3-208ENST00000472789 MARCH10Q8NA82 808 aaPredicted RBP14.1□□□□□ -0.15
SMARCD3-208ENST00000472789 OVOS2A0A0G2JMS6 1433 aa14.09□□□□□ -0.15
SMARCD3-208ENST00000472789 MRS2Q9HD23 443 aa14.09□□□□□ -0.15
SMARCD3-208ENST00000472789 TRIM37O94972 964 aa14.08□□□□□ -0.16
SMARCD3-208ENST00000472789 EZH2Q15910 746 aaKnown RBP14.08□□□□□ -0.16
SMARCD3-208ENST00000472789 SPG7Q9UQ90 795 aa14.08□□□□□ -0.16
SMARCD3-208ENST00000472789 COL3A1P02461 1466 aaPredicted RBP14.07□□□□□ -0.16
SMARCD3-208ENST00000472789 U2AF1L5P0DN76 240 aaPredicted RBP14.07□□□□□ -0.16
SMARCD3-208ENST00000472789 U2AF1Q01081 240 aaKnown RBP eCLIP14.07□□□□□ -0.16
SMARCD3-208ENST00000472789 UTRNP46939 3433 aa14.06□□□□□ -0.16
SMARCD3-208ENST00000472789 PLEKHO1Q53GL0 409 aaPredicted RBP14.06□□□□□ -0.16
SMARCD3-208ENST00000472789 ACSBG1Q96GR2 724 aa14.06□□□□□ -0.16
SMARCD3-208ENST00000472789 CAMKK2Q96RR4 588 aa14.06□□□□□ -0.16
SMARCD3-208ENST00000472789 PCDH11XQ9BZA7 1347 aa14.06□□□□□ -0.16
SMARCD3-208ENST00000472789 PCDH11YQ9BZA8 1340 aa14.06□□□□□ -0.16
SMARCD3-208ENST00000472789 NCAPD2Q15021 1401 aa14.06□□□□□ -0.16
SMARCD3-208ENST00000472789 KAT6BQ8WYB5 2073 aa14.05□□□□□ -0.16
SMARCD3-208ENST00000472789 ZNF530Q6P9A1 599 aaPredicted RBP14.04□□□□□ -0.16
SMARCD3-208ENST00000472789 SYTL4Q96C24 671 aaPredicted RBP14.04□□□□□ -0.16
SMARCD3-208ENST00000472789 APBA3O96018 575 aa14.03□□□□□ -0.16
SMARCD3-208ENST00000472789 AMOTQ4VCS5 1084 aa14.03□□□□□ -0.16
SMARCD3-208ENST00000472789 KDRP35968 1356 aa14.02□□□□□ -0.17
SMARCD3-208ENST00000472789 CYP27B1O15528 508 aa14.02□□□□□ -0.17
SMARCD3-208ENST00000472789 PRKAR2BP31323 418 aa14.02□□□□□ -0.17
SMARCD3-208ENST00000472789 C1orf141Q5JVX7 400 aa14.02□□□□□ -0.17
SMARCD3-208ENST00000472789 IFNL2Q8IZJ0 200 aa14.02□□□□□ -0.17
SMARCD3-208ENST00000472789 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.02□□□□□ -0.17
SMARCD3-208ENST00000472789 KCNQ2O43526 872 aa14.01□□□□□ -0.17
SMARCD3-208ENST00000472789 WDR43Q15061 677 aaKnown RBP eCLIP14.01□□□□□ -0.17
SMARCD3-208ENST00000472789 NEFMP07197 916 aa14□□□□□ -0.17
SMARCD3-208ENST00000472789 PHKG2P15735 406 aa14□□□□□ -0.17
SMARCD3-208ENST00000472789 PRIM1P49642 420 aaKnown RBP14□□□□□ -0.17
SMARCD3-208ENST00000472789 PTF1AQ7RTS3 328 aa14□□□□□ -0.17
SMARCD3-208ENST00000472789 BCL11BQ9C0K0 894 aaPredicted RBP14□□□□□ -0.17
SMARCD3-208ENST00000472789 RREB1Q92766 1687 aa14□□□□□ -0.17
SMARCD3-208ENST00000472789 PKD1L3Q7Z443 1732 aa13.99□□□□□ -0.17
SMARCD3-208ENST00000472789 RSPH6AQ9H0K4 717 aa13.99□□□□□ -0.17
SMARCD3-208ENST00000472789 BCL9O00512 1426 aa13.98□□□□□ -0.17
SMARCD3-208ENST00000472789 NUP188Q5SRE5 1749 aa13.98□□□□□ -0.17
SMARCD3-208ENST00000472789 SHANK3Q9BYB0 1731 aa13.98□□□□□ -0.17
SMARCD3-208ENST00000472789 FCHSD2O94868 740 aa13.98□□□□□ -0.17
SMARCD3-208ENST00000472789 HSP90AB1P08238 724 aaKnown RBP13.98□□□□□ -0.17
SMARCD3-208ENST00000472789 FAM9BQ8IZU0 186 aa13.98□□□□□ -0.17
SMARCD3-208ENST00000472789 PLEKHG2Q9H7P9 1386 aa13.97□□□□□ -0.17
SMARCD3-208ENST00000472789 MTHFSDQ2M296 383 aaKnown RBP13.97□□□□□ -0.17
SMARCD3-208ENST00000472789 MPRIPQ6WCQ1 1025 aa13.97□□□□□ -0.17
SMARCD3-208ENST00000472789 PNISRQ8TF01 805 aaKnown RBP13.97□□□□□ -0.17
SMARCD3-208ENST00000472789 YY1P25490 414 aa13.96□□□□□ -0.17
SMARCD3-208ENST00000472789 GAS2L2Q8NHY3 880 aa13.96□□□□□ -0.17
SMARCD3-208ENST00000472789 PHACTR3Q96KR7 559 aa13.96□□□□□ -0.17
SMARCD3-208ENST00000472789 PNNQ9H307 717 aaKnown RBP13.96□□□□□ -0.17
SMARCD3-208ENST00000472789 MAPK8IP3Q9UPT6 1336 aa13.95□□□□□ -0.18
SMARCD3-208ENST00000472789 NKX1-1Q15270 411 aaPredicted RBP13.95□□□□□ -0.18
SMARCD3-208ENST00000472789 CCDC184Q52MB2 194 aa13.95□□□□□ -0.18
SMARCD3-208ENST00000472789 AKAP4Q5JQC9 854 aa13.95□□□□□ -0.18
SMARCD3-208ENST00000472789 DCAF5Q96JK2 942 aa13.95□□□□□ -0.18
SMARCD3-208ENST00000472789 YTHDC1Q96MU7 727 aaKnown RBP13.95□□□□□ -0.18
SMARCD3-208ENST00000472789 TMOD3Q9NYL9 352 aa13.95□□□□□ -0.18
SMARCD3-208ENST00000472789 DOT1LQ8TEK3 1739 aa13.95□□□□□ -0.18
SMARCD3-208ENST00000472789 SBF2Q86WG5 1849 aa13.94□□□□□ -0.18
SMARCD3-208ENST00000472789 CABP4P57796 275 aa13.94□□□□□ -0.18
SMARCD3-208ENST00000472789 NHSQ6T4R5 1651 aa13.94□□□□□ -0.18
SMARCD3-208ENST00000472789 CENPBP07199 599 aaPredicted RBP13.93□□□□□ -0.18
SMARCD3-208ENST00000472789 CCDC146Q8IYE0 955 aa13.93□□□□□ -0.18
SMARCD3-208ENST00000472789 GNAT3A8MTJ3 354 aa13.92□□□□□ -0.18
SMARCD3-208ENST00000472789 NBPF14Q5TI25 921 aa13.92□□□□□ -0.18
SMARCD3-208ENST00000472789 ADAMTS8Q9UP79 889 aa13.92□□□□□ -0.18
SMARCD3-208ENST00000472789 MAP3K5Q99683 1374 aa13.92□□□□□ -0.18
SMARCD3-208ENST00000472789 GOLGB1Q14789 3259 aaKnown RBP13.92□□□□□ -0.18
SMARCD3-208ENST00000472789 ERVV-2B6SEH9 535 aa13.91□□□□□ -0.18
SMARCD3-208ENST00000472789 RNMTO43148 476 aaKnown RBP13.91□□□□□ -0.18
SMARCD3-208ENST00000472789 PIGBQ92521 554 aa13.91□□□□□ -0.18
SMARCD3-208ENST00000472789 RTF1Q92541 710 aaKnown RBP13.91□□□□□ -0.18
SMARCD3-208ENST00000472789 LGR6Q9HBX8 967 aa13.91□□□□□ -0.18
SMARCD3-208ENST00000472789 SPON1Q9HCB6 807 aa13.91□□□□□ -0.18
SMARCD3-208ENST00000472789 KDM6AO15550 1401 aaPredicted RBP13.9□□□□□ -0.18
SMARCD3-208ENST00000472789 BTAF1O14981 1849 aa13.9□□□□□ -0.18
SMARCD3-208ENST00000472789 PLSCR1O15162 318 aa13.9□□□□□ -0.18
SMARCD3-208ENST00000472789 TXNRD1Q16881 649 aa13.9□□□□□ -0.18
SMARCD3-208ENST00000472789 PLEKHF1Q96S99 279 aa13.9□□□□□ -0.18
SMARCD3-208ENST00000472789 TOGARAM1Q9Y4F4 1720 aa13.9□□□□□ -0.18
SMARCD3-208ENST00000472789 NEUROD2Q15784 382 aa13.89□□□□□ -0.19
SMARCD3-208ENST00000472789 NFATC2IPQ8NCF5 419 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms