RNA–Protein interactions for RNA: ENST00000469744.1

MRPL28-208, Transcript of mitochondrial ribosomal protein L28, humanhuman

TSL 1 (best)

Gene MRPL28, Length 1,467 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL28-208ENST00000469744 SHANK3Q9BYB0 1731 aa24.05■■□□□ 1.44
MRPL28-208ENST00000469744 TNNT2P45379 298 aaPredicted RBP24.05■■□□□ 1.44
MRPL28-208ENST00000469744 PLSCR1O15162 318 aa24.04■■□□□ 1.44
MRPL28-208ENST00000469744 KIF24Q5T7B8 1368 aa24.03■■□□□ 1.44
MRPL28-208ENST00000469744 LRP5O75197 1615 aa24.03■■□□□ 1.44
MRPL28-208ENST00000469744 BTAF1O14981 1849 aa24.02■■□□□ 1.44
MRPL28-208ENST00000469744 DDX10Q13206 875 aaKnown RBP24■■□□□ 1.43
MRPL28-208ENST00000469744 NBPF14Q5TI25 921 aa24■■□□□ 1.43
MRPL28-208ENST00000469744 PROM2Q8N271 834 aa24■■□□□ 1.43
MRPL28-208ENST00000469744 KIF7Q2M1P5 1343 aa24■■□□□ 1.43
MRPL28-208ENST00000469744 DOT1LQ8TEK3 1739 aa23.99■■□□□ 1.43
MRPL28-208ENST00000469744 ZCRB1Q8TBF4 217 aaKnown RBP23.99■■□□□ 1.43
MRPL28-208ENST00000469744 ANO8Q9HCE9 1232 aaPredicted RBP23.99■■□□□ 1.43
MRPL28-208ENST00000469744 POLKQ9UBT6 870 aa23.99■■□□□ 1.43
MRPL28-208ENST00000469744 RAPGEF4Q8WZA2 1011 aa23.98■■□□□ 1.43
MRPL28-208ENST00000469744 TXNRD1Q16881 649 aa23.97■■□□□ 1.43
MRPL28-208ENST00000469744 WASHC2AQ641Q2 1341 aa23.96■■□□□ 1.43
MRPL28-208ENST00000469744 TATP17735 454 aaPredicted RBP23.94■■□□□ 1.42
MRPL28-208ENST00000469744 SYTL4Q96C24 671 aaPredicted RBP23.94■■□□□ 1.42
MRPL28-208ENST00000469744 NSD2O96028 1365 aa23.93■■□□□ 1.42
MRPL28-208ENST00000469744 KNSTRNQ9Y448 316 aa23.92■■□□□ 1.42
MRPL28-208ENST00000469744 PRIM1P49642 420 aaKnown RBP23.91■■□□□ 1.42
MRPL28-208ENST00000469744 MORC1Q86VD1 984 aa23.91■■□□□ 1.42
MRPL28-208ENST00000469744 EYA1Q99502 592 aa23.9■■□□□ 1.42
MRPL28-208ENST00000469744 NCAPD2Q15021 1401 aa23.9■■□□□ 1.42
MRPL28-208ENST00000469744 PKD1L3Q7Z443 1732 aa23.9■■□□□ 1.42
MRPL28-208ENST00000469744 EIF4A2Q14240 407 aaKnown RBP23.89■■□□□ 1.42
MRPL28-208ENST00000469744 CCER2I3L3R5 266 aa23.87■■□□□ 1.41
MRPL28-208ENST00000469744 YTHDC1Q96MU7 727 aaKnown RBP23.87■■□□□ 1.41
MRPL28-208ENST00000469744 PDGFDQ9GZP0 370 aaPredicted RBP23.87■■□□□ 1.41
MRPL28-208ENST00000469744 CASZ1Q86V15 1759 aa23.87■■□□□ 1.41
MRPL28-208ENST00000469744 PCDH11XQ9BZA7 1347 aa23.87■■□□□ 1.41
MRPL28-208ENST00000469744 PCDH11YQ9BZA8 1340 aa23.87■■□□□ 1.41
MRPL28-208ENST00000469744 PAPPAQ13219 1627 aa23.86■■□□□ 1.41
MRPL28-208ENST00000469744 CYP27B1O15528 508 aa23.86■■□□□ 1.41
MRPL28-208ENST00000469744 AMER1Q5JTC6 1135 aaPredicted RBP23.86■■□□□ 1.41
MRPL28-208ENST00000469744 STK32BQ9NY57 414 aa23.86■■□□□ 1.41
MRPL28-208ENST00000469744 ANP32CO43423 234 aa23.85■■□□□ 1.41
MRPL28-208ENST00000469744 LRRC4BQ9NT99 713 aa23.85■■□□□ 1.41
MRPL28-208ENST00000469744 TOGARAM1Q9Y4F4 1720 aa23.84■■□□□ 1.41
MRPL28-208ENST00000469744 KCNQ4P56696 695 aa23.83■■□□□ 1.41
MRPL28-208ENST00000469744 SLC15A2Q16348 729 aa23.83■■□□□ 1.41
MRPL28-208ENST00000469744 LY75O60449 1722 aa23.82■■□□□ 1.4
MRPL28-208ENST00000469744 ITGB4P16144 1822 aa23.8■■□□□ 1.4
MRPL28-208ENST00000469744 PER1O15534 1290 aaPredicted RBP23.8■■□□□ 1.4
MRPL28-208ENST00000469744 CNGB1Q14028 1251 aaPredicted RBP23.8■■□□□ 1.4
MRPL28-208ENST00000469744 ZNF827Q17R98 1081 aa23.8■■□□□ 1.4
MRPL28-208ENST00000469744 SPON1Q9HCB6 807 aa23.8■■□□□ 1.4
MRPL28-208ENST00000469744 IGSF1Q8N6C5 1336 aa23.79■■□□□ 1.4
MRPL28-208ENST00000469744 ZBTB7AO95365 584 aa23.79■■□□□ 1.4
MRPL28-208ENST00000469744 CC2D1BQ5T0F9 858 aaKnown RBP23.79■■□□□ 1.4
MRPL28-208ENST00000469744 SPG7Q9UQ90 795 aa23.79■■□□□ 1.4
MRPL28-208ENST00000469744 SLC27A3Q5K4L6 730 aa23.76■■□□□ 1.39
MRPL28-208ENST00000469744 MPRIPQ6WCQ1 1025 aa23.76■■□□□ 1.39
MRPL28-208ENST00000469744 TUBGCP6Q96RT7 1819 aa23.75■■□□□ 1.39
MRPL28-208ENST00000469744 AEBP1Q8IUX7 1158 aa23.75■■□□□ 1.39
MRPL28-208ENST00000469744 ATF5Q9Y2D1 282 aaPredicted RBP23.75■■□□□ 1.39
MRPL28-208ENST00000469744 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.74■■□□□ 1.39
MRPL28-208ENST00000469744 PPP1R1BQ9UD71 204 aaPredicted RBP23.74■■□□□ 1.39
MRPL28-208ENST00000469744 CCNL1Q9UK58 526 aaPredicted RBP23.74■■□□□ 1.39
MRPL28-208ENST00000469744 AKT1S1Q96B36 256 aa23.73■■□□□ 1.39
MRPL28-208ENST00000469744 PHKG2P15735 406 aa23.72■■□□□ 1.39
MRPL28-208ENST00000469744 MTHFSP49914 203 aa23.72■■□□□ 1.39
MRPL28-208ENST00000469744 NKX1-1Q15270 411 aaPredicted RBP23.72■■□□□ 1.39
MRPL28-208ENST00000469744 PALLDQ8WX93 1383 aa23.71■■□□□ 1.39
MRPL28-208ENST00000469744 IL13P35225 146 aa23.7■■□□□ 1.38
MRPL28-208ENST00000469744 IFNL2Q8IZJ0 200 aa23.7■■□□□ 1.38
MRPL28-208ENST00000469744 PIGBQ92521 554 aa23.7■■□□□ 1.38
MRPL28-208ENST00000469744 C5P01031 1676 aa23.69■■□□□ 1.38
MRPL28-208ENST00000469744 QSER1Q2KHR3 1735 aa23.69■■□□□ 1.38
MRPL28-208ENST00000469744 SULT6B1Q6IMI4 303 aa23.68■■□□□ 1.38
MRPL28-208ENST00000469744 PTGER2P43116 358 aa23.68■■□□□ 1.38
MRPL28-208ENST00000469744 TFCP2L1Q9NZI6 479 aa23.68■■□□□ 1.38
MRPL28-208ENST00000469744 TAF1LQ8IZX4 1826 aa23.67■■□□□ 1.38
MRPL28-208ENST00000469744 GTF3C3Q9Y5Q9 886 aa23.67■■□□□ 1.38
MRPL28-208ENST00000469744 PNPLA7Q6ZV29 1317 aa23.66■■□□□ 1.38
MRPL28-208ENST00000469744 PLEKHO1Q53GL0 409 aaPredicted RBP23.66■■□□□ 1.38
MRPL28-208ENST00000469744 ZNF530Q6P9A1 599 aaPredicted RBP23.66■■□□□ 1.38
MRPL28-208ENST00000469744 MTFR1LQ9H019 292 aa23.66■■□□□ 1.38
MRPL28-208ENST00000469744 TMOD3Q9NYL9 352 aa23.66■■□□□ 1.38
MRPL28-208ENST00000469744 PLEKHG2Q9H7P9 1386 aa23.65■■□□□ 1.38
MRPL28-208ENST00000469744 NPC1L1Q9UHC9 1359 aa23.65■■□□□ 1.38
MRPL28-208ENST00000469744 KDRP35968 1356 aa23.65■■□□□ 1.38
MRPL28-208ENST00000469744 HMOX1P09601 288 aa23.62■■□□□ 1.37
MRPL28-208ENST00000469744 SMARCC1Q92922 1105 aaPredicted RBP23.62■■□□□ 1.37
MRPL28-208ENST00000469744 ASAP1Q9ULH1 1129 aa23.62■■□□□ 1.37
MRPL28-208ENST00000469744 KDM6AO15550 1401 aaPredicted RBP23.62■■□□□ 1.37
MRPL28-208ENST00000469744 AMOTQ4VCS5 1084 aa23.62■■□□□ 1.37
MRPL28-208ENST00000469744 SGIP1Q9BQI5 828 aa23.62■■□□□ 1.37
MRPL28-208ENST00000469744 C4BP0C0L5 1744 aa23.6■■□□□ 1.37
MRPL28-208ENST00000469744 DIAPH1O60610 1272 aaKnown RBP23.6■■□□□ 1.37
MRPL28-208ENST00000469744 COL3A1P02461 1466 aaPredicted RBP23.6■■□□□ 1.37
MRPL28-208ENST00000469744 C1orf141Q5JVX7 400 aa23.59■■□□□ 1.37
MRPL28-208ENST00000469744 DCAF5Q96JK2 942 aa23.59■■□□□ 1.37
MRPL28-208ENST00000469744 MSH5O43196 834 aa23.58■■□□□ 1.37
MRPL28-208ENST00000469744 LOC102724428A0A0B4J2F2 783 aa23.57■■□□□ 1.36
MRPL28-208ENST00000469744 HSP90AB1P08238 724 aaKnown RBP23.57■■□□□ 1.36
MRPL28-208ENST00000469744 SIK1P57059 783 aa23.57■■□□□ 1.36
MRPL28-208ENST00000469744 ATG3Q9NT62 314 aa23.57■■□□□ 1.36
MRPL28-208ENST00000469744 COL23A1Q86Y22 540 aaPredicted RBP23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms