RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 SOX12O15370 315 aa7.89□□□□□ -1.15
PTPN4-209ENST00000469511 SLC15A2Q16348 729 aa7.89□□□□□ -1.15
PTPN4-209ENST00000469511 TXNRD1Q16881 649 aa7.89□□□□□ -1.15
PTPN4-209ENST00000469511 ABTB2Q8N961 1025 aa7.88□□□□□ -1.15
PTPN4-209ENST00000469511 CABP2Q9NPB3 220 aa7.88□□□□□ -1.15
PTPN4-209ENST00000469511 AXIN2Q9Y2T1 843 aa7.88□□□□□ -1.15
PTPN4-209ENST00000469511 THRAP3Q9Y2W1 955 aaKnown RBP7.88□□□□□ -1.15
PTPN4-209ENST00000469511 TUBGCP6Q96RT7 1819 aa7.87□□□□□ -1.15
PTPN4-209ENST00000469511 CPDO75976 1380 aa7.87□□□□□ -1.15
PTPN4-209ENST00000469511 USP19O94966 1318 aa7.87□□□□□ -1.15
PTPN4-209ENST00000469511 GCP02774 474 aa7.87□□□□□ -1.15
PTPN4-209ENST00000469511 DDB1Q16531 1140 aa7.87□□□□□ -1.15
PTPN4-209ENST00000469511 EFCAB3Q8N7B9 438 aa7.87□□□□□ -1.15
PTPN4-209ENST00000469511 MS4A3Q96HJ5 214 aa7.87□□□□□ -1.15
PTPN4-209ENST00000469511 ARXQ96QS3 562 aa7.87□□□□□ -1.15
PTPN4-209ENST00000469511 CDK19Q9BWU1 502 aa7.87□□□□□ -1.15
PTPN4-209ENST00000469511 STK32BQ9NY57 414 aa7.87□□□□□ -1.15
PTPN4-209ENST00000469511 CRB1P82279 1406 aa7.86□□□□□ -1.15
PTPN4-209ENST00000469511 POLR3AO14802 1390 aaPredicted RBP7.86□□□□□ -1.15
PTPN4-209ENST00000469511 PAPPAQ13219 1627 aa7.86□□□□□ -1.15
PTPN4-209ENST00000469511 GIGYF1O75420 1035 aaPredicted RBP7.86□□□□□ -1.15
PTPN4-209ENST00000469511 NLRP6P59044 892 aa7.86□□□□□ -1.15
PTPN4-209ENST00000469511 GPR162Q16538 588 aa7.86□□□□□ -1.15
PTPN4-209ENST00000469511 ZNF827Q17R98 1081 aa7.86□□□□□ -1.15
PTPN4-209ENST00000469511 FBXO22Q8NEZ5 403 aa7.86□□□□□ -1.15
PTPN4-209ENST00000469511 NLGN2Q8NFZ4 835 aa7.86□□□□□ -1.15
PTPN4-209ENST00000469511 MTFR1LQ9H019 292 aa7.86□□□□□ -1.15
PTPN4-209ENST00000469511 BTAF1O14981 1849 aa7.85□□□□□ -1.15
PTPN4-209ENST00000469511 CLCN6P51797 869 aa7.85□□□□□ -1.15
PTPN4-209ENST00000469511 PELP1Q8IZL8 1130 aaKnown RBP7.85□□□□□ -1.15
PTPN4-209ENST00000469511 ACSBG1Q96GR2 724 aa7.85□□□□□ -1.15
PTPN4-209ENST00000469511 COL24A1Q17RW2 1714 aa7.85□□□□□ -1.15
PTPN4-209ENST00000469511 CEP350Q5VT06 3117 aa7.85□□□□□ -1.15
PTPN4-209ENST00000469511 PLEKHG3A1L390 1219 aa7.84□□□□□ -1.15
PTPN4-209ENST00000469511 TOM1L2Q6ZVM7 507 aa7.84□□□□□ -1.15
PTPN4-209ENST00000469511 TMEM106CQ9BVX2 250 aa7.84□□□□□ -1.15
PTPN4-209ENST00000469511 LRRC4BQ9NT99 713 aa7.84□□□□□ -1.15
PTPN4-209ENST00000469511 EIF3AQ14152 1382 aaKnown RBP7.84□□□□□ -1.16
PTPN4-209ENST00000469511 NHSQ6T4R5 1651 aa7.83□□□□□ -1.16
PTPN4-209ENST00000469511 YBX3P16989 372 aaKnown RBP eCLIP7.83□□□□□ -1.16
PTPN4-209ENST00000469511 TIE1P35590 1138 aa7.83□□□□□ -1.16
PTPN4-209ENST00000469511 KCNQ4P56696 695 aa7.83□□□□□ -1.16
PTPN4-209ENST00000469511 TRPC6Q9Y210 931 aa7.83□□□□□ -1.16
PTPN4-209ENST00000469511 PIK3C2AO00443 1686 aa7.83□□□□□ -1.16
PTPN4-209ENST00000469511 HAX1O00165 279 aa7.82□□□□□ -1.16
PTPN4-209ENST00000469511 NLRP13Q86W25 1043 aa7.82□□□□□ -1.16
PTPN4-209ENST00000469511 DCAF11Q8TEB1 546 aa7.82□□□□□ -1.16
PTPN4-209ENST00000469511 SLIT3O75094 1523 aa7.82□□□□□ -1.16
PTPN4-209ENST00000469511 AATKQ6ZMQ8 1374 aa7.82□□□□□ -1.16
PTPN4-209ENST00000469511 MAP3K5Q99683 1374 aa7.82□□□□□ -1.16
PTPN4-209ENST00000469511 BCL9O00512 1426 aa7.81□□□□□ -1.16
PTPN4-209ENST00000469511 QSER1Q2KHR3 1735 aa7.81□□□□□ -1.16
PTPN4-209ENST00000469511 WDR17Q8IZU2 1322 aa7.8□□□□□ -1.16
PTPN4-209ENST00000469511 ATP10DQ9P241 1426 aa7.8□□□□□ -1.16
PTPN4-209ENST00000469511 C11orf95C9JLR9 678 aaPredicted RBP7.8□□□□□ -1.16
PTPN4-209ENST00000469511 GOLGA2Q08379 1002 aa7.8□□□□□ -1.16
PTPN4-209ENST00000469511 PNPLA7Q6ZV29 1317 aa7.79□□□□□ -1.16
PTPN4-209ENST00000469511 PPIP5K1Q6PFW1 1433 aa7.79□□□□□ -1.16
PTPN4-209ENST00000469511 TTLL13PA6NNM8 815 aa7.79□□□□□ -1.16
PTPN4-209ENST00000469511 EXOC5O00471 708 aa7.79□□□□□ -1.16
PTPN4-209ENST00000469511 PPP1R37O75864 691 aa7.79□□□□□ -1.16
PTPN4-209ENST00000469511 EVX2Q03828 476 aa7.79□□□□□ -1.16
PTPN4-209ENST00000469511 NBPF1Q3BBV0 1214 aa7.79□□□□□ -1.16
PTPN4-209ENST00000469511 ZNF526Q8TF50 670 aaPredicted RBP7.79□□□□□ -1.16
PTPN4-209ENST00000469511 CARD10Q9BWT7 1032 aa7.79□□□□□ -1.16
PTPN4-209ENST00000469511 HSPA6P17066 643 aa7.78□□□□□ -1.16
PTPN4-209ENST00000469511 ARHGEF25Q86VW2 580 aa7.78□□□□□ -1.16
PTPN4-209ENST00000469511 MS4A4AQ96JQ5 239 aa7.78□□□□□ -1.16
PTPN4-209ENST00000469511 CABP1Q9NZU7 370 aa7.78□□□□□ -1.16
PTPN4-209ENST00000469511 TRPM1Q7Z4N2 1603 aa7.78□□□□□ -1.16
PTPN4-209ENST00000469511 USP6P35125 1406 aa7.78□□□□□ -1.16
PTPN4-209ENST00000469511 CPSF1Q10570 1443 aaKnown RBP7.78□□□□□ -1.16
PTPN4-209ENST00000469511 GOLGB1Q14789 3259 aaKnown RBP7.77□□□□□ -1.16
PTPN4-209ENST00000469511 GALR2O43603 387 aaPredicted RBP7.77□□□□□ -1.17
PTPN4-209ENST00000469511 CSB-PGBD3P0DP91 1061 aa7.77□□□□□ -1.17
PTPN4-209ENST00000469511 MKRN3Q13064 507 aaKnown RBP7.77□□□□□ -1.17
PTPN4-209ENST00000469511 BMP2KQ9NSY1 1161 aaPredicted RBP7.77□□□□□ -1.17
PTPN4-209ENST00000469511 WWC3Q9ULE0 1092 aa7.77□□□□□ -1.17
PTPN4-209ENST00000469511 TNS2Q63HR2 1409 aa7.77□□□□□ -1.17
PTPN4-209ENST00000469511 LY75O60449 1722 aa7.76□□□□□ -1.17
PTPN4-209ENST00000469511 SRPK2P78362 688 aaKnown RBP7.76□□□□□ -1.17
PTPN4-209ENST00000469511 MSL1Q68DK7 614 aa7.76□□□□□ -1.17
PTPN4-209ENST00000469511 QRICH2Q9H0J4 1663 aa7.76□□□□□ -1.17
PTPN4-209ENST00000469511 LTN1O94822 1766 aa7.75□□□□□ -1.17
PTPN4-209ENST00000469511 RGPD2P0DJD1 1756 aa7.75□□□□□ -1.17
PTPN4-209ENST00000469511 NFAT5O94916 1531 aa7.75□□□□□ -1.17
PTPN4-209ENST00000469511 CDCA7Q9BWT1 371 aaPredicted RBP7.75□□□□□ -1.17
PTPN4-209ENST00000469511 ADCY9O60503 1353 aa7.74□□□□□ -1.17
PTPN4-209ENST00000469511 BRD4O60885 1362 aaPredicted RBP7.74□□□□□ -1.17
PTPN4-209ENST00000469511 ABCC6O95255 1503 aa7.74□□□□□ -1.17
PTPN4-209ENST00000469511 KIF3CO14782 793 aa7.74□□□□□ -1.17
PTPN4-209ENST00000469511 POLD1P28340 1107 aa7.74□□□□□ -1.17
PTPN4-209ENST00000469511 SMIM5Q71RC9 77 aa7.74□□□□□ -1.17
PTPN4-209ENST00000469511 COL23A1Q86Y22 540 aaPredicted RBP7.74□□□□□ -1.17
PTPN4-209ENST00000469511 DNAJC5GQ8N7S2 189 aa7.74□□□□□ -1.17
PTPN4-209ENST00000469511 SLC16A10Q8TF71 515 aa7.74□□□□□ -1.17
PTPN4-209ENST00000469511 GPBP1L1Q9HC44 474 aaPredicted RBP7.74□□□□□ -1.17
PTPN4-209ENST00000469511 DOT1LQ8TEK3 1739 aa7.74□□□□□ -1.17
PTPN4-209ENST00000469511 TTC21BQ7Z4L5 1316 aa7.74□□□□□ -1.17
PTPN4-209ENST00000469511 HTRA3P83110 453 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms