RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 PAPPAQ13219 1627 aa23■■□□□ 1.27
CCDC28B-204ENST00000469003 PDGFDQ9GZP0 370 aaPredicted RBP23■■□□□ 1.27
CCDC28B-204ENST00000469003 HSP90AB2PQ58FF8 381 aa22.99■■□□□ 1.27
CCDC28B-204ENST00000469003 CGNL1Q0VF96 1302 aa22.99■■□□□ 1.27
CCDC28B-204ENST00000469003 DOT1LQ8TEK3 1739 aa22.99■■□□□ 1.27
CCDC28B-204ENST00000469003 USHBP1Q8N6Y0 703 aa22.97■■□□□ 1.27
CCDC28B-204ENST00000469003 ZBTB7AO95365 584 aa22.96■■□□□ 1.27
CCDC28B-204ENST00000469003 CCER1Q8TC90 406 aaPredicted RBP22.96■■□□□ 1.27
CCDC28B-204ENST00000469003 RAPGEF4Q8WZA2 1011 aa22.96■■□□□ 1.27
CCDC28B-204ENST00000469003 EIF4G2P78344 907 aaKnown RBP eCLIP22.95■■□□□ 1.26
CCDC28B-204ENST00000469003 ANKRD26Q9UPS8 1709 aa22.95■■□□□ 1.26
CCDC28B-204ENST00000469003 EMILIN1Q9Y6C2 1016 aa22.95■■□□□ 1.26
CCDC28B-204ENST00000469003 PRIM1P49642 420 aaKnown RBP22.94■■□□□ 1.26
CCDC28B-204ENST00000469003 LRRC4BQ9NT99 713 aa22.94■■□□□ 1.26
CCDC28B-204ENST00000469003 NSD2O96028 1365 aa22.93■■□□□ 1.26
CCDC28B-204ENST00000469003 TATP17735 454 aaPredicted RBP22.93■■□□□ 1.26
CCDC28B-204ENST00000469003 SLC27A3Q5K4L6 730 aa22.93■■□□□ 1.26
CCDC28B-204ENST00000469003 SYTL4Q96C24 671 aaPredicted RBP22.93■■□□□ 1.26
CCDC28B-204ENST00000469003 POLR3GLQ9BT43 218 aa22.93■■□□□ 1.26
CCDC28B-204ENST00000469003 HSPA5P11021 654 aaKnown RBP22.92■■□□□ 1.26
CCDC28B-204ENST00000469003 LY75O60449 1722 aa22.91■■□□□ 1.26
CCDC28B-204ENST00000469003 PTGER2P43116 358 aa22.91■■□□□ 1.26
CCDC28B-204ENST00000469003 MTFR1LQ9H019 292 aa22.91■■□□□ 1.26
CCDC28B-204ENST00000469003 ATF5Q9Y2D1 282 aaPredicted RBP22.91■■□□□ 1.26
CCDC28B-204ENST00000469003 MAP2P11137 1827 aaKnown RBP22.91■■□□□ 1.26
CCDC28B-204ENST00000469003 ZNF827Q17R98 1081 aa22.9■■□□□ 1.26
CCDC28B-204ENST00000469003 PCDH11XQ9BZA7 1347 aa22.89■■□□□ 1.26
CCDC28B-204ENST00000469003 PCDH11YQ9BZA8 1340 aa22.89■■□□□ 1.26
CCDC28B-204ENST00000469003 NCAPD2Q15021 1401 aa22.89■■□□□ 1.25
CCDC28B-204ENST00000469003 QSER1Q2KHR3 1735 aa22.88■■□□□ 1.25
CCDC28B-204ENST00000469003 WASHC2AQ641Q2 1341 aa22.88■■□□□ 1.25
CCDC28B-204ENST00000469003 PPM1GO15355 546 aaPredicted RBP22.88■■□□□ 1.25
CCDC28B-204ENST00000469003 AKT1S1Q96B36 256 aa22.88■■□□□ 1.25
CCDC28B-204ENST00000469003 ZNF784Q8NCA9 323 aaPredicted RBP22.87■■□□□ 1.25
CCDC28B-204ENST00000469003 PKD1L3Q7Z443 1732 aa22.86■■□□□ 1.25
CCDC28B-204ENST00000469003 SGIP1Q9BQI5 828 aa22.86■■□□□ 1.25
CCDC28B-204ENST00000469003 POLKQ9UBT6 870 aa22.85■■□□□ 1.25
CCDC28B-204ENST00000469003 UTRNP46939 3433 aa22.85■■□□□ 1.25
CCDC28B-204ENST00000469003 KCNQ4P56696 695 aa22.83■■□□□ 1.25
CCDC28B-204ENST00000469003 PANK3Q9H999 370 aa22.83■■□□□ 1.25
CCDC28B-204ENST00000469003 TUBGCP6Q96RT7 1819 aa22.82■■□□□ 1.24
CCDC28B-204ENST00000469003 CYP27B1O15528 508 aa22.82■■□□□ 1.24
CCDC28B-204ENST00000469003 CCNL1Q9UK58 526 aaPredicted RBP22.82■■□□□ 1.24
CCDC28B-204ENST00000469003 SLC16A10Q8TF71 515 aa22.81■■□□□ 1.24
CCDC28B-204ENST00000469003 EYA1Q99502 592 aa22.81■■□□□ 1.24
CCDC28B-204ENST00000469003 TOGARAM1Q9Y4F4 1720 aa22.8■■□□□ 1.24
CCDC28B-204ENST00000469003 SENP3-EIF4A1A0A087X0R7 540 aa22.8■■□□□ 1.24
CCDC28B-204ENST00000469003 TFCP2L1Q9NZI6 479 aa22.8■■□□□ 1.24
CCDC28B-204ENST00000469003 PNPLA7Q6ZV29 1317 aa22.8■■□□□ 1.24
CCDC28B-204ENST00000469003 CHD4Q14839 1912 aa22.79■■□□□ 1.24
CCDC28B-204ENST00000469003 TNNT2P45379 298 aaPredicted RBP22.79■■□□□ 1.24
CCDC28B-204ENST00000469003 FHDC1Q9C0D6 1143 aaPredicted RBP22.79■■□□□ 1.24
CCDC28B-204ENST00000469003 SPG7Q9UQ90 795 aa22.79■■□□□ 1.24
CCDC28B-204ENST00000469003 ITGB4P16144 1822 aa22.79■■□□□ 1.24
CCDC28B-204ENST00000469003 COL24A1Q17RW2 1714 aa22.78■■□□□ 1.24
CCDC28B-204ENST00000469003 ARXQ96QS3 562 aa22.78■■□□□ 1.24
CCDC28B-204ENST00000469003 SYT17Q9BSW7 474 aa22.78■■□□□ 1.24
CCDC28B-204ENST00000469003 EIF4A2Q14240 407 aaKnown RBP22.77■■□□□ 1.24
CCDC28B-204ENST00000469003 NKX1-1Q15270 411 aaPredicted RBP22.77■■□□□ 1.24
CCDC28B-204ENST00000469003 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.77■■□□□ 1.24
CCDC28B-204ENST00000469003 MPRIPQ6WCQ1 1025 aa22.76■■□□□ 1.23
CCDC28B-204ENST00000469003 C5P01031 1676 aa22.76■■□□□ 1.23
CCDC28B-204ENST00000469003 PALLDQ8WX93 1383 aa22.76■■□□□ 1.23
CCDC28B-204ENST00000469003 MAP3K5Q99683 1374 aa22.75■■□□□ 1.23
CCDC28B-204ENST00000469003 HMGB2P26583 209 aaKnown RBP22.74■■□□□ 1.23
CCDC28B-204ENST00000469003 PLEKHG2Q9H7P9 1386 aa22.74■■□□□ 1.23
CCDC28B-204ENST00000469003 TAF1LQ8IZX4 1826 aa22.73■■□□□ 1.23
CCDC28B-204ENST00000469003 SMARCC1Q92922 1105 aaPredicted RBP22.73■■□□□ 1.23
CCDC28B-204ENST00000469003 POLD1P28340 1107 aa22.72■■□□□ 1.23
CCDC28B-204ENST00000469003 C1QTNF8P60827 252 aa22.72■■□□□ 1.23
CCDC28B-204ENST00000469003 IFNL2Q8IZJ0 200 aa22.71■■□□□ 1.23
CCDC28B-204ENST00000469003 IGSF1Q8N6C5 1336 aa22.71■■□□□ 1.23
CCDC28B-204ENST00000469003 PHKG2P15735 406 aa22.7■■□□□ 1.22
CCDC28B-204ENST00000469003 MORC1Q86VD1 984 aa22.7■■□□□ 1.22
CCDC28B-204ENST00000469003 PIGBQ92521 554 aa22.7■■□□□ 1.22
CCDC28B-204ENST00000469003 KNSTRNQ9Y448 316 aa22.7■■□□□ 1.22
CCDC28B-204ENST00000469003 COL23A1Q86Y22 540 aaPredicted RBP22.69■■□□□ 1.22
CCDC28B-204ENST00000469003 MSH5O43196 834 aa22.67■■□□□ 1.22
CCDC28B-204ENST00000469003 TMOD3Q9NYL9 352 aa22.67■■□□□ 1.22
CCDC28B-204ENST00000469003 C4BP0C0L5 1744 aa22.67■■□□□ 1.22
CCDC28B-204ENST00000469003 KIF7Q2M1P5 1343 aa22.66■■□□□ 1.22
CCDC28B-204ENST00000469003 FLAD1Q8NFF5 587 aa22.65■■□□□ 1.22
CCDC28B-204ENST00000469003 GPR162Q16538 588 aa22.63■■□□□ 1.21
CCDC28B-204ENST00000469003 AMER1Q5JTC6 1135 aaPredicted RBP22.63■■□□□ 1.21
CCDC28B-204ENST00000469003 LOC102724428A0A0B4J2F2 783 aa22.62■■□□□ 1.21
CCDC28B-204ENST00000469003 SIK1P57059 783 aa22.62■■□□□ 1.21
CCDC28B-204ENST00000469003 PLEKHO1Q53GL0 409 aaPredicted RBP22.62■■□□□ 1.21
CCDC28B-204ENST00000469003 KLHL34Q8N239 644 aa22.62■■□□□ 1.21
CCDC28B-204ENST00000469003 AK7Q96M32 723 aa22.62■■□□□ 1.21
CCDC28B-204ENST00000469003 UBR3Q6ZT12 1888 aa22.62■■□□□ 1.21
CCDC28B-204ENST00000469003 HSP90AB1P08238 724 aaKnown RBP22.61■■□□□ 1.21
CCDC28B-204ENST00000469003 ASAP1Q9ULH1 1129 aa22.61■■□□□ 1.21
CCDC28B-204ENST00000469003 AMOTQ4VCS5 1084 aa22.6■■□□□ 1.21
CCDC28B-204ENST00000469003 ERVV-2B6SEH9 535 aa22.59■■□□□ 1.21
CCDC28B-204ENST00000469003 GIGYF1O75420 1035 aaPredicted RBP22.59■■□□□ 1.21
CCDC28B-204ENST00000469003 MSL1Q68DK7 614 aa22.59■■□□□ 1.21
CCDC28B-204ENST00000469003 DCAF5Q96JK2 942 aa22.59■■□□□ 1.21
CCDC28B-204ENST00000469003 ATG3Q9NT62 314 aa22.59■■□□□ 1.21
CCDC28B-204ENST00000469003 ZNF530Q6P9A1 599 aaPredicted RBP22.58■■□□□ 1.21
CCDC28B-204ENST00000469003 AEBP1Q8IUX7 1158 aa22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms