RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 IGHDP01880 384 aa9.7□□□□□ -0.86
COL6A3-208ENST00000468792 TWISTNBQ3B726 338 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-208ENST00000468792 BCL2L13Q9BXK5 485 aa9.7□□□□□ -0.86
COL6A3-208ENST00000468792 API5Q9BZZ5 524 aaKnown RBP9.7□□□□□ -0.86
COL6A3-208ENST00000468792 ZBTB40Q9NUA8 1239 aa9.7□□□□□ -0.86
COL6A3-208ENST00000468792 PCDHB15Q9Y5E8 787 aa9.7□□□□□ -0.86
COL6A3-208ENST00000468792 TRPM3Q9HCF6 1732 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-208ENST00000468792 ABCC4O15439 1325 aa9.69□□□□□ -0.86
COL6A3-208ENST00000468792 LRRC37A3O60309 1634 aa9.69□□□□□ -0.86
COL6A3-208ENST00000468792 MTHFSDQ2M296 383 aaKnown RBP9.69□□□□□ -0.86
COL6A3-208ENST00000468792 ARHGEF25Q86VW2 580 aa9.69□□□□□ -0.86
COL6A3-208ENST00000468792 RTF1Q92541 710 aaKnown RBP9.69□□□□□ -0.86
COL6A3-208ENST00000468792 LTN1O94822 1766 aa9.68□□□□□ -0.86
COL6A3-208ENST00000468792 ABCC6O95255 1503 aa9.68□□□□□ -0.86
COL6A3-208ENST00000468792 PTPRCP08575 1304 aa9.68□□□□□ -0.86
COL6A3-208ENST00000468792 PAK3O75914 559 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-208ENST00000468792 FAM161AQ3B820 660 aa9.68□□□□□ -0.86
COL6A3-208ENST00000468792 C14orf37Q86TY3 774 aa9.68□□□□□ -0.86
COL6A3-208ENST00000468792 CADPS2Q86UW7 1296 aa9.68□□□□□ -0.86
COL6A3-208ENST00000468792 TSPYL6Q8N831 410 aa9.68□□□□□ -0.86
COL6A3-208ENST00000468792 C8orf58Q8NAV2 365 aa9.68□□□□□ -0.86
COL6A3-208ENST00000468792 THUMPD2Q9BTF0 503 aaKnown RBP9.68□□□□□ -0.86
COL6A3-208ENST00000468792 CHMP4AQ9BY43 222 aa9.68□□□□□ -0.86
COL6A3-208ENST00000468792 OVOS2A0A0G2JMS6 1433 aa9.67□□□□□ -0.86
COL6A3-208ENST00000468792 FAM83GA6ND36 823 aa9.67□□□□□ -0.86
COL6A3-208ENST00000468792 GNAT3A8MTJ3 354 aa9.67□□□□□ -0.86
COL6A3-208ENST00000468792 GCP02774 474 aa9.67□□□□□ -0.86
COL6A3-208ENST00000468792 ANP32AP39687 249 aaKnown RBP9.67□□□□□ -0.86
COL6A3-208ENST00000468792 SMC5Q8IY18 1101 aa9.67□□□□□ -0.86
COL6A3-208ENST00000468792 TMEM57Q8N5G2 664 aa9.67□□□□□ -0.86
COL6A3-208ENST00000468792 ORAI2Q96SN7 254 aa9.67□□□□□ -0.86
COL6A3-208ENST00000468792 TNNQ9UQP3 1299 aa9.67□□□□□ -0.86
COL6A3-208ENST00000468792 LAS1LQ9Y4W2 734 aaKnown RBP9.67□□□□□ -0.86
COL6A3-208ENST00000468792 TMEM94Q12767 1356 aa9.66□□□□□ -0.86
COL6A3-208ENST00000468792 CEMIPQ8WUJ3 1361 aa9.66□□□□□ -0.86
COL6A3-208ENST00000468792 MAP3K5Q99683 1374 aa9.66□□□□□ -0.86
COL6A3-208ENST00000468792 ZBTB7BO15156 539 aaPredicted RBP9.66□□□□□ -0.86
COL6A3-208ENST00000468792 ATF3P18847 181 aa9.66□□□□□ -0.86
COL6A3-208ENST00000468792 INTS3Q68E01 1043 aaKnown RBP9.66□□□□□ -0.86
COL6A3-208ENST00000468792 KRT28Q7Z3Y7 464 aa9.66□□□□□ -0.86
COL6A3-208ENST00000468792 ALS2Q96Q42 1657 aa9.66□□□□□ -0.86
COL6A3-208ENST00000468792 CAMTA1Q9Y6Y1 1673 aa9.66□□□□□ -0.86
COL6A3-208ENST00000468792 SOX12O15370 315 aa9.65□□□□□ -0.86
COL6A3-208ENST00000468792 FOXO3O43524 673 aa9.65□□□□□ -0.86
COL6A3-208ENST00000468792 DCTN1Q14203 1278 aa9.65□□□□□ -0.86
COL6A3-208ENST00000468792 AMOTQ4VCS5 1084 aa9.65□□□□□ -0.86
COL6A3-208ENST00000468792 MCM10Q7L590 875 aa9.65□□□□□ -0.86
COL6A3-208ENST00000468792 ITPRIPQ8IWB1 547 aa9.65□□□□□ -0.86
COL6A3-208ENST00000468792 IPO9Q96P70 1041 aaKnown RBP9.65□□□□□ -0.86
COL6A3-208ENST00000468792 STRCP1A6NGW2 1772 aa9.65□□□□□ -0.87
COL6A3-208ENST00000468792 CACNA1FO60840 1977 aa9.64□□□□□ -0.87
COL6A3-208ENST00000468792 MSH6P52701 1360 aa9.64□□□□□ -0.87
COL6A3-208ENST00000468792 NPHP3Q7Z494 1330 aa9.64□□□□□ -0.87
COL6A3-208ENST00000468792 MED1Q15648 1581 aaPredicted RBP9.64□□□□□ -0.87
COL6A3-208ENST00000468792 HOXB7P09629 217 aa9.64□□□□□ -0.87
COL6A3-208ENST00000468792 TAF7Q15545 349 aaPredicted RBP9.64□□□□□ -0.87
COL6A3-208ENST00000468792 C8orf34Q49A92 452 aa9.64□□□□□ -0.87
COL6A3-208ENST00000468792 NBPF6Q5VWK0 638 aa9.63□□□□□ -0.87
COL6A3-208ENST00000468792 NUTM2GQ5VZR2 741 aa9.63□□□□□ -0.87
COL6A3-208ENST00000468792 GCC1Q96CN9 775 aa9.63□□□□□ -0.87
COL6A3-208ENST00000468792 RBM33Q96EV2 1170 aaKnown RBP9.63□□□□□ -0.87
COL6A3-208ENST00000468792 NBPF4Q96M43 638 aa9.63□□□□□ -0.87
COL6A3-208ENST00000468792 TSPYL4Q9UJ04 414 aa9.63□□□□□ -0.87
COL6A3-208ENST00000468792 LMO7Q8WWI1 1683 aa9.62□□□□□ -0.87
COL6A3-208ENST00000468792 PLEKHO1Q53GL0 409 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-208ENST00000468792 AKAP4Q5JQC9 854 aa9.62□□□□□ -0.87
COL6A3-208ENST00000468792 IL17REQ8NFR9 667 aa9.62□□□□□ -0.87
COL6A3-208ENST00000468792 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.62□□□□□ -0.87
COL6A3-208ENST00000468792 ZNF219Q9P2Y4 722 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-208ENST00000468792 PDZRN3Q9UPQ7 1066 aa9.62□□□□□ -0.87
COL6A3-208ENST00000468792 RGS12O14924 1447 aa9.62□□□□□ -0.87
COL6A3-208ENST00000468792 CPDO75976 1380 aa9.62□□□□□ -0.87
COL6A3-208ENST00000468792 DDRGK1Q96HY6 314 aa9.61□□□□□ -0.87
COL6A3-208ENST00000468792 TNS3Q68CZ2 1445 aa9.61□□□□□ -0.87
COL6A3-208ENST00000468792 VIRMAQ69YN4 1812 aaKnown RBP9.61□□□□□ -0.87
COL6A3-208ENST00000468792 PXDNQ92626 1479 aa9.6□□□□□ -0.87
COL6A3-208ENST00000468792 KDM4FA0A1W2PPD8 638 aa9.6□□□□□ -0.87
COL6A3-208ENST00000468792 ELL2O00472 640 aaPredicted RBP9.6□□□□□ -0.87
COL6A3-208ENST00000468792 NUCB1Q02818 461 aa9.6□□□□□ -0.87
COL6A3-208ENST00000468792 CCDC30Q5VVM6 783 aa9.6□□□□□ -0.87
COL6A3-208ENST00000468792 RPAP2Q8IXW5 612 aaPredicted RBP9.6□□□□□ -0.87
COL6A3-208ENST00000468792 RTN4Q9NQC3 1192 aaKnown RBP9.6□□□□□ -0.87
COL6A3-208ENST00000468792 ADAMTS7Q9UKP4 1686 aa9.6□□□□□ -0.87
COL6A3-208ENST00000468792 STRCQ7RTU9 1775 aa9.6□□□□□ -0.87
COL6A3-208ENST00000468792 ERBB3P21860 1342 aa9.59□□□□□ -0.87
COL6A3-208ENST00000468792 SPATA31A3Q5VYP0 1347 aa9.59□□□□□ -0.87
COL6A3-208ENST00000468792 FAM208AQ9UK61 1670 aaKnown RBP9.59□□□□□ -0.87
COL6A3-208ENST00000468792 RGS3P49796 1198 aa9.59□□□□□ -0.87
COL6A3-208ENST00000468792 CCT4P50991 539 aaKnown RBP9.59□□□□□ -0.87
COL6A3-208ENST00000468792 ANKRD24Q8TF21 1146 aa9.59□□□□□ -0.87
COL6A3-208ENST00000468792 ANP32EQ9BTT0 268 aa9.59□□□□□ -0.87
COL6A3-208ENST00000468792 PXDNLA1KZ92 1463 aa9.59□□□□□ -0.87
COL6A3-208ENST00000468792 COL18A1P39060 1754 aa9.58□□□□□ -0.88
COL6A3-208ENST00000468792 MYT1Q01538 1121 aa9.58□□□□□ -0.88
COL6A3-208ENST00000468792 LTV1Q96GA3 475 aaPredicted RBP9.58□□□□□ -0.88
COL6A3-208ENST00000468792 STK31Q9BXU1 1019 aa9.58□□□□□ -0.88
COL6A3-208ENST00000468792 NOP58Q9Y2X3 529 aaKnown RBP9.58□□□□□ -0.88
COL6A3-208ENST00000468792 XIRP1Q702N8 1843 aaKnown RBP9.58□□□□□ -0.88
COL6A3-208ENST00000468792 SOS2Q07890 1332 aaPredicted RBP9.57□□□□□ -0.88
COL6A3-208ENST00000468792 CRYBG1Q9Y4K1 1723 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms