RNA–Protein interactions for RNA: ENST00000467124.1

VPS13A-209, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5

Gene VPS13A, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-209ENST00000467124 USP4Q13107 963 aa7.09□□□□□ -1.27
VPS13A-209ENST00000467124 RC3H1Q5TC82 1133 aaKnown RBP7.09□□□□□ -1.27
VPS13A-209ENST00000467124 PHLDB3Q6NSJ2 640 aa7.09□□□□□ -1.27
VPS13A-209ENST00000467124 VASH1Q7L8A9 365 aaPredicted RBP7.09□□□□□ -1.27
VPS13A-209ENST00000467124 SIX5Q8N196 739 aa7.09□□□□□ -1.27
VPS13A-209ENST00000467124 LARGE2Q8N3Y3 721 aa7.09□□□□□ -1.27
VPS13A-209ENST00000467124 DNAAF2Q9NVR5 837 aaKnown RBP7.09□□□□□ -1.27
VPS13A-209ENST00000467124 SWI5Q1ZZU3 235 aa7.08□□□□□ -1.28
VPS13A-209ENST00000467124 GAS2L2Q8NHY3 880 aa7.08□□□□□ -1.28
VPS13A-209ENST00000467124 SFI1A8K8P3 1242 aa7.07□□□□□ -1.28
VPS13A-209ENST00000467124 PRMT3O60678 531 aa7.07□□□□□ -1.28
VPS13A-209ENST00000467124 MYCP01106 439 aaPredicted RBP7.07□□□□□ -1.28
VPS13A-209ENST00000467124 SLC19A1P41440 591 aa7.07□□□□□ -1.28
VPS13A-209ENST00000467124 RBM25P49756 843 aaKnown RBP7.07□□□□□ -1.28
VPS13A-209ENST00000467124 GTF2IP78347 998 aa7.07□□□□□ -1.28
VPS13A-209ENST00000467124 PSME1Q06323 249 aa7.07□□□□□ -1.28
VPS13A-209ENST00000467124 FAM69CQ0P6D2 419 aa7.07□□□□□ -1.28
VPS13A-209ENST00000467124 NR5A1Q13285 461 aa7.07□□□□□ -1.28
VPS13A-209ENST00000467124 INTS6LQ5JSJ4 861 aaKnown RBP7.07□□□□□ -1.28
VPS13A-209ENST00000467124 LIAT1Q6ZQX7 453 aa7.07□□□□□ -1.28
VPS13A-209ENST00000467124 PRIMPOLQ96LW4 560 aa7.07□□□□□ -1.28
VPS13A-209ENST00000467124 RBM19Q9Y4C8 960 aaKnown RBP7.07□□□□□ -1.28
VPS13A-209ENST00000467124 PCDHB11Q9Y5F2 797 aa7.07□□□□□ -1.28
VPS13A-209ENST00000467124 A0A0G2JS52 829 aa7.06□□□□□ -1.28
VPS13A-209ENST00000467124 ADH1CP00326 375 aa7.06□□□□□ -1.28
VPS13A-209ENST00000467124 ATP2B4P23634 1241 aa7.06□□□□□ -1.28
VPS13A-209ENST00000467124 CCDC27Q2M243 656 aa7.06□□□□□ -1.28
VPS13A-209ENST00000467124 ZBTB7BO15156 539 aaPredicted RBP7.05□□□□□ -1.28
VPS13A-209ENST00000467124 FSHRP23945 695 aa7.05□□□□□ -1.28
VPS13A-209ENST00000467124 SERPINB4P48594 390 aa7.05□□□□□ -1.28
VPS13A-209ENST00000467124 SND1Q7KZF4 910 aaKnown RBP eCLIP7.05□□□□□ -1.28
VPS13A-209ENST00000467124 TPCN2Q8NHX9 752 aa7.05□□□□□ -1.28
VPS13A-209ENST00000467124 V9GY48 417 aaPredicted RBP7.05□□□□□ -1.28
VPS13A-209ENST00000467124 SIAH2O43255 324 aa7.04□□□□□ -1.28
VPS13A-209ENST00000467124 SSFA2P28290 1259 aa7.04□□□□□ -1.28
VPS13A-209ENST00000467124 ERVK-9P63128 1117 aa7.04□□□□□ -1.28
VPS13A-209ENST00000467124 SPRYD7Q5W111 196 aa7.04□□□□□ -1.28
VPS13A-209ENST00000467124 CLP1Q92989 425 aaKnown RBP7.04□□□□□ -1.28
VPS13A-209ENST00000467124 PLA2G2EQ9NZK7 142 aa7.04□□□□□ -1.28
VPS13A-209ENST00000467124 M0R2N6 131 aa7.03□□□□□ -1.28
VPS13A-209ENST00000467124 ERVH48-1M5A8F1 160 aa7.03□□□□□ -1.28
VPS13A-209ENST00000467124 STAU1O95793 577 aaKnown RBP7.03□□□□□ -1.28
VPS13A-209ENST00000467124 ARID5BQ14865 1188 aa7.03□□□□□ -1.28
VPS13A-209ENST00000467124 CCDC102BQ68D86 513 aa7.03□□□□□ -1.28
VPS13A-209ENST00000467124 CC2D2BQ6DHV5 1058 aa7.03□□□□□ -1.28
VPS13A-209ENST00000467124 ZNF598Q86UK7 904 aaKnown RBP7.03□□□□□ -1.28
VPS13A-209ENST00000467124 TXNDC2Q86VQ3 553 aa7.03□□□□□ -1.28
VPS13A-209ENST00000467124 CCDC116Q8IYX3 515 aa7.03□□□□□ -1.28
VPS13A-209ENST00000467124 CCER1Q8TC90 406 aaPredicted RBP7.03□□□□□ -1.28
VPS13A-209ENST00000467124 EMID1Q96A84 441 aaPredicted RBP7.03□□□□□ -1.28
VPS13A-209ENST00000467124 ESF1Q9H501 851 aaKnown RBP7.03□□□□□ -1.28
VPS13A-209ENST00000467124 TLL2Q9Y6L7 1015 aa7.03□□□□□ -1.28
VPS13A-209ENST00000467124 WASLO00401 505 aaPredicted RBP7.02□□□□□ -1.29
VPS13A-209ENST00000467124 DKK1O94907 266 aa7.02□□□□□ -1.29
VPS13A-209ENST00000467124 GRM5P41594 1212 aa7.02□□□□□ -1.29
VPS13A-209ENST00000467124 SEC13P55735 322 aa7.02□□□□□ -1.29
VPS13A-209ENST00000467124 MRGPRX2Q96LB1 330 aa7.02□□□□□ -1.29
VPS13A-209ENST00000467124 HINFPQ9BQA5 517 aa7.02□□□□□ -1.29
VPS13A-209ENST00000467124 ANO2Q9NQ90 1003 aa7.02□□□□□ -1.29
VPS13A-209ENST00000467124 PCDHGA11Q9Y5H2 935 aa7.02□□□□□ -1.29
VPS13A-209ENST00000467124 EMILIN1Q9Y6C2 1016 aa7.02□□□□□ -1.29
VPS13A-209ENST00000467124 SCTRP47872 440 aa7.01□□□□□ -1.29
VPS13A-209ENST00000467124 ZNF697Q5TEC3 545 aa7.01□□□□□ -1.29
VPS13A-209ENST00000467124 CYP2U1Q7Z449 544 aa7.01□□□□□ -1.29
VPS13A-209ENST00000467124 MKNK1Q9BUB5 465 aa7.01□□□□□ -1.29
VPS13A-209ENST00000467124 PGPEP1Q9NXJ5 209 aa7.01□□□□□ -1.29
VPS13A-209ENST00000467124 GNEQ9Y223 722 aaKnown RBP7.01□□□□□ -1.29
VPS13A-209ENST00000467124 ABL1P00519 1130 aa7□□□□□ -1.29
VPS13A-209ENST00000467124 ARID4AP29374 1257 aaPredicted RBP7□□□□□ -1.29
VPS13A-209ENST00000467124 MYT1Q01538 1121 aa7□□□□□ -1.29
VPS13A-209ENST00000467124 SERBP1Q8NC51 408 aaKnown RBP eCLIP7□□□□□ -1.29
VPS13A-209ENST00000467124 TSEN2Q8NCE0 465 aaKnown RBP7□□□□□ -1.29
VPS13A-209ENST00000467124 C1orf216Q8TAB5 229 aa7□□□□□ -1.29
VPS13A-209ENST00000467124 ZNF211Q13398 564 aaPredicted RBP6.99□□□□□ -1.29
VPS13A-209ENST00000467124 ZNF784Q8NCA9 323 aaPredicted RBP6.99□□□□□ -1.29
VPS13A-209ENST00000467124 CYLDQ9NQC7 956 aa6.99□□□□□ -1.29
VPS13A-209ENST00000467124 TMPRSS4Q9NRS4 437 aa6.99□□□□□ -1.29
VPS13A-209ENST00000467124 BIN2Q9UBW5 565 aaPredicted RBP6.99□□□□□ -1.29
VPS13A-209ENST00000467124 PPP1R26Q5T8A7 1209 aaPredicted RBP6.98□□□□□ -1.29
VPS13A-209ENST00000467124 CAPN12Q6ZSI9 719 aa6.98□□□□□ -1.29
VPS13A-209ENST00000467124 SNIP1Q8TAD8 396 aaKnown RBP6.98□□□□□ -1.29
VPS13A-209ENST00000467124 PURBQ96QR8 312 aaKnown RBP6.98□□□□□ -1.29
VPS13A-209ENST00000467124 BACH1O14867 736 aa6.97□□□□□ -1.29
VPS13A-209ENST00000467124 RGS20O76081 388 aa6.97□□□□□ -1.29
VPS13A-209ENST00000467124 GNRH1P01148 92 aa6.97□□□□□ -1.29
VPS13A-209ENST00000467124 ESCO1Q5FWF5 840 aa6.97□□□□□ -1.29
VPS13A-209ENST00000467124 PRKD2Q9BZL6 878 aa6.97□□□□□ -1.29
VPS13A-209ENST00000467124 OSBPL3Q9H4L5 887 aa6.97□□□□□ -1.29
VPS13A-209ENST00000467124 SEPT3Q9UH03 358 aa6.97□□□□□ -1.29
VPS13A-209ENST00000467124 WASF2Q9Y6W5 498 aa6.97□□□□□ -1.29
VPS13A-209ENST00000467124 SOWAHDA6NJG2 315 aa6.96□□□□□ -1.3
VPS13A-209ENST00000467124 LILRA1O75019 489 aa6.96□□□□□ -1.3
VPS13A-209ENST00000467124 PRR20EP86478 221 aa6.96□□□□□ -1.3
VPS13A-209ENST00000467124 PRR20CP86479 221 aa6.96□□□□□ -1.3
VPS13A-209ENST00000467124 PRR20DP86480 221 aa6.96□□□□□ -1.3
VPS13A-209ENST00000467124 PRR20BP86481 221 aa6.96□□□□□ -1.3
VPS13A-209ENST00000467124 PRR20AP86496 221 aa6.96□□□□□ -1.3
VPS13A-209ENST00000467124 NNTQ13423 1086 aa6.96□□□□□ -1.3
VPS13A-209ENST00000467124 MTMR3Q13615 1198 aa6.96□□□□□ -1.3
VPS13A-209ENST00000467124 OCLNQ16625 522 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms