RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 NBPF4Q96M43 638 aa24.18■■□□□ 1.46
COL7A1-206ENST00000466591 HSP90AB2PQ58FF8 381 aa24.17■■□□□ 1.46
COL7A1-206ENST00000466591 ATF5Q9Y2D1 282 aaPredicted RBP24.17■■□□□ 1.46
COL7A1-206ENST00000466591 INSRP06213 1382 aa24.16■■□□□ 1.46
COL7A1-206ENST00000466591 RGPD2P0DJD1 1756 aa24.16■■□□□ 1.46
COL7A1-206ENST00000466591 MYOM1P52179 1685 aa24.16■■□□□ 1.46
COL7A1-206ENST00000466591 PRIM1P49642 420 aaKnown RBP24.16■■□□□ 1.46
COL7A1-206ENST00000466591 CARD14Q9BXL6 1004 aa24.16■■□□□ 1.46
COL7A1-206ENST00000466591 KIF24Q5T7B8 1368 aa24.16■■□□□ 1.46
COL7A1-206ENST00000466591 MEGF6O75095 1541 aa24.15■■□□□ 1.46
COL7A1-206ENST00000466591 PDGFDQ9GZP0 370 aaPredicted RBP24.14■■□□□ 1.45
COL7A1-206ENST00000466591 SLC27A3Q5K4L6 730 aa24.13■■□□□ 1.45
COL7A1-206ENST00000466591 EMILIN1Q9Y6C2 1016 aa24.13■■□□□ 1.45
COL7A1-206ENST00000466591 CASZ1Q86V15 1759 aa24.12■■□□□ 1.45
COL7A1-206ENST00000466591 MTFR1LQ9H019 292 aa24.12■■□□□ 1.45
COL7A1-206ENST00000466591 PCDH11XQ9BZA7 1347 aa24.11■■□□□ 1.45
COL7A1-206ENST00000466591 PCDH11YQ9BZA8 1340 aa24.11■■□□□ 1.45
COL7A1-206ENST00000466591 DOT1LQ8TEK3 1739 aa24.11■■□□□ 1.45
COL7A1-206ENST00000466591 HSPA5P11021 654 aaKnown RBP24.11■■□□□ 1.45
COL7A1-206ENST00000466591 TNNT2P45379 298 aaPredicted RBP24.11■■□□□ 1.45
COL7A1-206ENST00000466591 TFCP2L1Q9NZI6 479 aa24.09■■□□□ 1.45
COL7A1-206ENST00000466591 LRRC4BQ9NT99 713 aa24.07■■□□□ 1.44
COL7A1-206ENST00000466591 CCNL1Q9UK58 526 aaPredicted RBP24.07■■□□□ 1.44
COL7A1-206ENST00000466591 ZNF827Q17R98 1081 aa24.06■■□□□ 1.44
COL7A1-206ENST00000466591 MSH5O43196 834 aa24.05■■□□□ 1.44
COL7A1-206ENST00000466591 SPG7Q9UQ90 795 aa24.05■■□□□ 1.44
COL7A1-206ENST00000466591 KCNQ4P56696 695 aa24.04■■□□□ 1.44
COL7A1-206ENST00000466591 KLHL34Q8N239 644 aa24.04■■□□□ 1.44
COL7A1-206ENST00000466591 SHANK3Q9BYB0 1731 aa24.04■■□□□ 1.44
COL7A1-206ENST00000466591 HMGB2P26583 209 aaKnown RBP24.03■■□□□ 1.44
COL7A1-206ENST00000466591 POLD1P28340 1107 aa24.03■■□□□ 1.44
COL7A1-206ENST00000466591 PTGER2P43116 358 aa24.03■■□□□ 1.44
COL7A1-206ENST00000466591 MPRIPQ6WCQ1 1025 aa24.03■■□□□ 1.44
COL7A1-206ENST00000466591 PANK3Q9H999 370 aa24.03■■□□□ 1.44
COL7A1-206ENST00000466591 WASHC2AQ641Q2 1341 aa24.03■■□□□ 1.44
COL7A1-206ENST00000466591 PAPPAQ13219 1627 aa24.02■■□□□ 1.44
COL7A1-206ENST00000466591 YY1P25490 414 aa24.02■■□□□ 1.44
COL7A1-206ENST00000466591 ARXQ96QS3 562 aa24.01■■□□□ 1.43
COL7A1-206ENST00000466591 FHDC1Q9C0D6 1143 aaPredicted RBP24.01■■□□□ 1.43
COL7A1-206ENST00000466591 SLC16A10Q8TF71 515 aa23.99■■□□□ 1.43
COL7A1-206ENST00000466591 AKT1S1Q96B36 256 aa23.99■■□□□ 1.43
COL7A1-206ENST00000466591 POLKQ9UBT6 870 aa23.99■■□□□ 1.43
COL7A1-206ENST00000466591 NSD2O96028 1365 aa23.99■■□□□ 1.43
COL7A1-206ENST00000466591 MAP2P11137 1827 aaKnown RBP23.98■■□□□ 1.43
COL7A1-206ENST00000466591 MORC1Q86VD1 984 aa23.98■■□□□ 1.43
COL7A1-206ENST00000466591 KNSTRNQ9Y448 316 aa23.98■■□□□ 1.43
COL7A1-206ENST00000466591 EYA1Q99502 592 aa23.97■■□□□ 1.43
COL7A1-206ENST00000466591 ANKRD26Q9UPS8 1709 aa23.96■■□□□ 1.43
COL7A1-206ENST00000466591 CYP27B1O15528 508 aa23.96■■□□□ 1.43
COL7A1-206ENST00000466591 SMARCC1Q92922 1105 aaPredicted RBP23.96■■□□□ 1.43
COL7A1-206ENST00000466591 SYT17Q9BSW7 474 aa23.96■■□□□ 1.43
COL7A1-206ENST00000466591 PALLDQ8WX93 1383 aa23.95■■□□□ 1.42
COL7A1-206ENST00000466591 PNPLA7Q6ZV29 1317 aa23.95■■□□□ 1.42
COL7A1-206ENST00000466591 LY75O60449 1722 aa23.95■■□□□ 1.42
COL7A1-206ENST00000466591 EIF4A2Q14240 407 aaKnown RBP23.93■■□□□ 1.42
COL7A1-206ENST00000466591 TMOD3Q9NYL9 352 aa23.93■■□□□ 1.42
COL7A1-206ENST00000466591 IFNL2Q8IZJ0 200 aa23.92■■□□□ 1.42
COL7A1-206ENST00000466591 PKD1L3Q7Z443 1732 aa23.91■■□□□ 1.42
COL7A1-206ENST00000466591 AK7Q96M32 723 aa23.91■■□□□ 1.42
COL7A1-206ENST00000466591 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.91■■□□□ 1.42
COL7A1-206ENST00000466591 PELP1Q8IZL8 1130 aaKnown RBP23.9■■□□□ 1.42
COL7A1-206ENST00000466591 SGIP1Q9BQI5 828 aa23.9■■□□□ 1.42
COL7A1-206ENST00000466591 QSER1Q2KHR3 1735 aa23.9■■□□□ 1.42
COL7A1-206ENST00000466591 NCAPD2Q15021 1401 aa23.88■■□□□ 1.41
COL7A1-206ENST00000466591 FLAD1Q8NFF5 587 aa23.88■■□□□ 1.41
COL7A1-206ENST00000466591 PHKG2P15735 406 aa23.87■■□□□ 1.41
COL7A1-206ENST00000466591 GPR162Q16538 588 aa23.87■■□□□ 1.41
COL7A1-206ENST00000466591 PIGBQ92521 554 aa23.87■■□□□ 1.41
COL7A1-206ENST00000466591 C5P01031 1676 aa23.86■■□□□ 1.41
COL7A1-206ENST00000466591 NKX1-1Q15270 411 aaPredicted RBP23.86■■□□□ 1.41
COL7A1-206ENST00000466591 PLEKHO1Q53GL0 409 aaPredicted RBP23.86■■□□□ 1.41
COL7A1-206ENST00000466591 HSP90AB1P08238 724 aaKnown RBP23.85■■□□□ 1.41
COL7A1-206ENST00000466591 MSL1Q68DK7 614 aa23.85■■□□□ 1.41
COL7A1-206ENST00000466591 COL23A1Q86Y22 540 aaPredicted RBP23.85■■□□□ 1.41
COL7A1-206ENST00000466591 TOGARAM1Q9Y4F4 1720 aa23.84■■□□□ 1.41
COL7A1-206ENST00000466591 ITGB4P16144 1822 aa23.84■■□□□ 1.41
COL7A1-206ENST00000466591 TUBGCP6Q96RT7 1819 aa23.84■■□□□ 1.41
COL7A1-206ENST00000466591 PHF14O94880 888 aa23.84■■□□□ 1.41
COL7A1-206ENST00000466591 C1orf141Q5JVX7 400 aa23.83■■□□□ 1.41
COL7A1-206ENST00000466591 IGSF1Q8N6C5 1336 aa23.83■■□□□ 1.4
COL7A1-206ENST00000466591 MAP3K5Q99683 1374 aa23.82■■□□□ 1.4
COL7A1-206ENST00000466591 KIF7Q2M1P5 1343 aa23.82■■□□□ 1.4
COL7A1-206ENST00000466591 LOC102724428A0A0B4J2F2 783 aa23.81■■□□□ 1.4
COL7A1-206ENST00000466591 SIK1P57059 783 aa23.81■■□□□ 1.4
COL7A1-206ENST00000466591 AMOTQ4VCS5 1084 aa23.81■■□□□ 1.4
COL7A1-206ENST00000466591 ZNF530Q6P9A1 599 aaPredicted RBP23.81■■□□□ 1.4
COL7A1-206ENST00000466591 ATP6V1AP38606 617 aa23.8■■□□□ 1.4
COL7A1-206ENST00000466591 CNGB1Q14028 1251 aaPredicted RBP23.8■■□□□ 1.4
COL7A1-206ENST00000466591 PLEKHG2Q9H7P9 1386 aa23.79■■□□□ 1.4
COL7A1-206ENST00000466591 C4BP0C0L5 1744 aa23.79■■□□□ 1.4
COL7A1-206ENST00000466591 CABP4P57796 275 aa23.78■■□□□ 1.4
COL7A1-206ENST00000466591 SULT6B1Q6IMI4 303 aa23.78■■□□□ 1.4
COL7A1-206ENST00000466591 DCAF5Q96JK2 942 aa23.78■■□□□ 1.4
COL7A1-206ENST00000466591 ASAP1Q9ULH1 1129 aa23.78■■□□□ 1.4
COL7A1-206ENST00000466591 MTHFSP49914 203 aa23.77■■□□□ 1.4
COL7A1-206ENST00000466591 RBM42Q9BTD8 480 aaKnown RBP23.77■■□□□ 1.4
COL7A1-206ENST00000466591 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.76■■□□□ 1.39
COL7A1-206ENST00000466591 ERVV-2B6SEH9 535 aa23.76■■□□□ 1.39
COL7A1-206ENST00000466591 GNPATO15228 680 aa23.76■■□□□ 1.39
COL7A1-206ENST00000466591 CC2D1BQ5T0F9 858 aaKnown RBP23.76■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms