RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 COL24A1Q17RW2 1714 aa28.92■■■□□ 2.22
COL6A1-203ENST00000466285 ANKRD26Q9UPS8 1709 aa28.92■■■□□ 2.22
COL6A1-203ENST00000466285 TMF1P82094 1093 aa28.92■■■□□ 2.22
COL6A1-203ENST00000466285 NBPF6Q5VWK0 638 aa28.92■■■□□ 2.22
COL6A1-203ENST00000466285 NBPF4Q96M43 638 aa28.92■■■□□ 2.22
COL6A1-203ENST00000466285 MTFR1LQ9H019 292 aa28.89■■■□□ 2.22
COL6A1-203ENST00000466285 YY1P25490 414 aa28.88■■■□□ 2.21
COL6A1-203ENST00000466285 CARD14Q9BXL6 1004 aa28.88■■■□□ 2.21
COL6A1-203ENST00000466285 FHDC1Q9C0D6 1143 aaPredicted RBP28.88■■■□□ 2.21
COL6A1-203ENST00000466285 NSD3Q9BZ95 1437 aa28.87■■■□□ 2.21
COL6A1-203ENST00000466285 AKT1S1Q96B36 256 aa28.87■■■□□ 2.21
COL6A1-203ENST00000466285 PRIM1P49642 420 aaKnown RBP28.86■■■□□ 2.21
COL6A1-203ENST00000466285 SYTL4Q96C24 671 aaPredicted RBP28.86■■■□□ 2.21
COL6A1-203ENST00000466285 PKD1L3Q7Z443 1732 aa28.86■■■□□ 2.21
COL6A1-203ENST00000466285 HSP90AB2PQ58FF8 381 aa28.85■■■□□ 2.21
COL6A1-203ENST00000466285 ZCRB1Q8TBF4 217 aaKnown RBP28.84■■■□□ 2.21
COL6A1-203ENST00000466285 PNPLA7Q6ZV29 1317 aa28.83■■■□□ 2.21
COL6A1-203ENST00000466285 C5P01031 1676 aa28.83■■■□□ 2.21
COL6A1-203ENST00000466285 ITGB4P16144 1822 aa28.83■■■□□ 2.21
COL6A1-203ENST00000466285 SYT17Q9BSW7 474 aa28.82■■■□□ 2.2
COL6A1-203ENST00000466285 INSRP06213 1382 aa28.82■■■□□ 2.2
COL6A1-203ENST00000466285 FLT4P35916 1363 aa28.81■■■□□ 2.2
COL6A1-203ENST00000466285 EMILIN1Q9Y6C2 1016 aa28.81■■■□□ 2.2
COL6A1-203ENST00000466285 TAF1LQ8IZX4 1826 aa28.8■■■□□ 2.2
COL6A1-203ENST00000466285 SMG6Q86US8 1419 aaKnown RBP28.8■■■□□ 2.2
COL6A1-203ENST00000466285 MAP2P11137 1827 aaKnown RBP28.79■■■□□ 2.2
COL6A1-203ENST00000466285 SLC24A1O60721 1099 aa28.79■■■□□ 2.2
COL6A1-203ENST00000466285 SLC27A3Q5K4L6 730 aa28.76■■■□□ 2.19
COL6A1-203ENST00000466285 NCAPD2Q15021 1401 aa28.76■■■□□ 2.19
COL6A1-203ENST00000466285 ARXQ96QS3 562 aa28.75■■■□□ 2.19
COL6A1-203ENST00000466285 CHD4Q14839 1912 aa28.73■■■□□ 2.19
COL6A1-203ENST00000466285 GOLGB1Q14789 3259 aaKnown RBP28.72■■■□□ 2.19
COL6A1-203ENST00000466285 RAPGEF4Q8WZA2 1011 aa28.72■■■□□ 2.19
COL6A1-203ENST00000466285 KIF24Q5T7B8 1368 aa28.72■■■□□ 2.19
COL6A1-203ENST00000466285 MAP3K5Q99683 1374 aa28.72■■■□□ 2.19
COL6A1-203ENST00000466285 CYP27B1O15528 508 aa28.71■■■□□ 2.19
COL6A1-203ENST00000466285 CCNL1Q9UK58 526 aaPredicted RBP28.71■■■□□ 2.19
COL6A1-203ENST00000466285 TATP17735 454 aaPredicted RBP28.7■■■□□ 2.18
COL6A1-203ENST00000466285 CDCA8Q53HL2 280 aa28.7■■■□□ 2.18
COL6A1-203ENST00000466285 PCGF6Q9BYE7 350 aa28.69■■■□□ 2.18
COL6A1-203ENST00000466285 TFCP2L1Q9NZI6 479 aa28.69■■■□□ 2.18
COL6A1-203ENST00000466285 CGNL1Q0VF96 1302 aa28.69■■■□□ 2.18
COL6A1-203ENST00000466285 PCDH11XQ9BZA7 1347 aa28.69■■■□□ 2.18
COL6A1-203ENST00000466285 PCDH11YQ9BZA8 1340 aa28.69■■■□□ 2.18
COL6A1-203ENST00000466285 C4BP0C0L5 1744 aa28.67■■■□□ 2.18
COL6A1-203ENST00000466285 DCAF8L1A6NGE4 600 aa28.67■■■□□ 2.18
COL6A1-203ENST00000466285 PPM1GO15355 546 aaPredicted RBP28.65■■■□□ 2.18
COL6A1-203ENST00000466285 KLHL34Q8N239 644 aa28.65■■■□□ 2.18
COL6A1-203ENST00000466285 UBR3Q6ZT12 1888 aa28.65■■■□□ 2.18
COL6A1-203ENST00000466285 PALLDQ8WX93 1383 aa28.64■■■□□ 2.18
COL6A1-203ENST00000466285 AMIGO3Q86WK7 504 aa28.63■■■□□ 2.17
COL6A1-203ENST00000466285 COL23A1Q86Y22 540 aaPredicted RBP28.63■■■□□ 2.17
COL6A1-203ENST00000466285 NLGN2Q8NFZ4 835 aa28.63■■■□□ 2.17
COL6A1-203ENST00000466285 POLR3GLQ9BT43 218 aa28.63■■■□□ 2.17
COL6A1-203ENST00000466285 MSL1Q68DK7 614 aa28.61■■■□□ 2.17
COL6A1-203ENST00000466285 MPRIPQ6WCQ1 1025 aa28.61■■■□□ 2.17
COL6A1-203ENST00000466285 SLC16A10Q8TF71 515 aa28.61■■■□□ 2.17
COL6A1-203ENST00000466285 SMIM5Q71RC9 77 aa28.6■■■□□ 2.17
COL6A1-203ENST00000466285 ZNF784Q8NCA9 323 aaPredicted RBP28.59■■■□□ 2.17
COL6A1-203ENST00000466285 EYA1Q99502 592 aa28.59■■■□□ 2.17
COL6A1-203ENST00000466285 POLKQ9UBT6 870 aa28.59■■■□□ 2.17
COL6A1-203ENST00000466285 TIMELESSQ9UNS1 1208 aa28.59■■■□□ 2.17
COL6A1-203ENST00000466285 WASHC2AQ641Q2 1341 aa28.59■■■□□ 2.17
COL6A1-203ENST00000466285 TNNT2P45379 298 aaPredicted RBP28.57■■■□□ 2.16
COL6A1-203ENST00000466285 CLSPNQ9HAW4 1339 aa28.57■■■□□ 2.16
COL6A1-203ENST00000466285 HSPA5P11021 654 aaKnown RBP28.56■■■□□ 2.16
COL6A1-203ENST00000466285 POLD1P28340 1107 aa28.56■■■□□ 2.16
COL6A1-203ENST00000466285 MSH5O43196 834 aa28.55■■■□□ 2.16
COL6A1-203ENST00000466285 PIGBQ92521 554 aa28.54■■■□□ 2.16
COL6A1-203ENST00000466285 EIF4A2Q14240 407 aaKnown RBP28.53■■■□□ 2.16
COL6A1-203ENST00000466285 NKX1-1Q15270 411 aaPredicted RBP28.51■■■□□ 2.15
COL6A1-203ENST00000466285 GPR162Q16538 588 aa28.5■■■□□ 2.15
COL6A1-203ENST00000466285 PELP1Q8IZL8 1130 aaKnown RBP28.5■■■□□ 2.15
COL6A1-203ENST00000466285 YBX3P16989 372 aaKnown RBP eCLIP28.48■■■□□ 2.15
COL6A1-203ENST00000466285 LINC00116Q8NCU8 138 aa28.48■■■□□ 2.15
COL6A1-203ENST00000466285 PHKG2P15735 406 aa28.47■■■□□ 2.15
COL6A1-203ENST00000466285 PANK3Q9H999 370 aa28.47■■■□□ 2.15
COL6A1-203ENST00000466285 ASAP1Q9ULH1 1129 aa28.46■■■□□ 2.15
COL6A1-203ENST00000466285 SPG7Q9UQ90 795 aa28.46■■■□□ 2.15
COL6A1-203ENST00000466285 COL5A3P25940 1745 aaPredicted RBP28.46■■■□□ 2.15
COL6A1-203ENST00000466285 IGSF1Q8N6C5 1336 aa28.45■■■□□ 2.15
COL6A1-203ENST00000466285 PHF14O94880 888 aa28.45■■■□□ 2.14
COL6A1-203ENST00000466285 ITPK1Q13572 414 aa28.45■■■□□ 2.14
COL6A1-203ENST00000466285 EIF4G2P78344 907 aaKnown RBP eCLIP28.44■■■□□ 2.14
COL6A1-203ENST00000466285 KDM6AO15550 1401 aaPredicted RBP28.43■■■□□ 2.14
COL6A1-203ENST00000466285 KDRP35968 1356 aa28.43■■■□□ 2.14
COL6A1-203ENST00000466285 SMARCC1Q92922 1105 aaPredicted RBP28.42■■■□□ 2.14
COL6A1-203ENST00000466285 AK7Q96M32 723 aa28.42■■■□□ 2.14
COL6A1-203ENST00000466285 LOC102724428A0A0B4J2F2 783 aa28.41■■■□□ 2.14
COL6A1-203ENST00000466285 SIK1P57059 783 aa28.41■■■□□ 2.14
COL6A1-203ENST00000466285 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.41■■■□□ 2.14
COL6A1-203ENST00000466285 TMOD3Q9NYL9 352 aa28.41■■■□□ 2.14
COL6A1-203ENST00000466285 AEBP1Q8IUX7 1158 aa28.4■■■□□ 2.14
COL6A1-203ENST00000466285 KIAA1551Q9HCM1 1747 aa28.4■■■□□ 2.14
COL6A1-203ENST00000466285 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.39■■■□□ 2.14
COL6A1-203ENST00000466285 IFNL2Q8IZJ0 200 aa28.39■■■□□ 2.14
COL6A1-203ENST00000466285 ATG3Q9NT62 314 aa28.39■■■□□ 2.14
COL6A1-203ENST00000466285 SLC4A9Q96Q91 983 aa28.38■■■□□ 2.13
COL6A1-203ENST00000466285 ZNF831Q5JPB2 1677 aa28.38■■■□□ 2.13
COL6A1-203ENST00000466285 C4AP0C0L4 1744 aa28.38■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms