RNA–Protein interactions for RNA: ENST00000465073.6

USP42-205, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 5

Gene USP42, Length 1,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-205ENST00000465073 CGNL1Q0VF96 1302 aa31.76■■■□□ 2.67
USP42-205ENST00000465073 FHDC1Q9C0D6 1143 aaPredicted RBP31.75■■■□□ 2.67
USP42-205ENST00000465073 MEGF6O75095 1541 aa31.74■■■□□ 2.67
USP42-205ENST00000465073 SMG6Q86US8 1419 aaKnown RBP31.74■■■□□ 2.67
USP42-205ENST00000465073 AKT1S1Q96B36 256 aa31.74■■■□□ 2.67
USP42-205ENST00000465073 SYT17Q9BSW7 474 aa31.74■■■□□ 2.67
USP42-205ENST00000465073 RAPGEF4Q8WZA2 1011 aa31.72■■■□□ 2.67
USP42-205ENST00000465073 INSRP06213 1382 aa31.71■■■□□ 2.67
USP42-205ENST00000465073 ARXQ96QS3 562 aa31.71■■■□□ 2.67
USP42-205ENST00000465073 RGPD2P0DJD1 1756 aa31.7■■■□□ 2.67
USP42-205ENST00000465073 KIF24Q5T7B8 1368 aa31.7■■■□□ 2.67
USP42-205ENST00000465073 HSP90AB2PQ58FF8 381 aa31.7■■■□□ 2.66
USP42-205ENST00000465073 USHBP1Q8N6Y0 703 aa31.7■■■□□ 2.66
USP42-205ENST00000465073 SLC16A10Q8TF71 515 aa31.69■■■□□ 2.66
USP42-205ENST00000465073 CARD14Q9BXL6 1004 aa31.69■■■□□ 2.66
USP42-205ENST00000465073 NSD2O96028 1365 aa31.68■■■□□ 2.66
USP42-205ENST00000465073 FLT4P35916 1363 aa31.68■■■□□ 2.66
USP42-205ENST00000465073 TATP17735 454 aaPredicted RBP31.67■■■□□ 2.66
USP42-205ENST00000465073 TFCP2L1Q9NZI6 479 aa31.65■■■□□ 2.66
USP42-205ENST00000465073 KCNQ4P56696 695 aa31.65■■■□□ 2.66
USP42-205ENST00000465073 DOT1LQ8TEK3 1739 aa31.65■■■□□ 2.66
USP42-205ENST00000465073 SHANK3Q9BYB0 1731 aa31.65■■■□□ 2.66
USP42-205ENST00000465073 CLSPNQ9HAW4 1339 aa31.63■■■□□ 2.65
USP42-205ENST00000465073 MAP3K5Q99683 1374 aa31.63■■■□□ 2.65
USP42-205ENST00000465073 KIF20BQ96Q89 1820 aa31.63■■■□□ 2.65
USP42-205ENST00000465073 PNPLA7Q6ZV29 1317 aa31.62■■■□□ 2.65
USP42-205ENST00000465073 CCNL1Q9UK58 526 aaPredicted RBP31.62■■■□□ 2.65
USP42-205ENST00000465073 NSD3Q9BZ95 1437 aa31.62■■■□□ 2.65
USP42-205ENST00000465073 PCDH11XQ9BZA7 1347 aa31.61■■■□□ 2.65
USP42-205ENST00000465073 PCDH11YQ9BZA8 1340 aa31.61■■■□□ 2.65
USP42-205ENST00000465073 QSER1Q2KHR3 1735 aa31.59■■■□□ 2.65
USP42-205ENST00000465073 POLD1P28340 1107 aa31.59■■■□□ 2.65
USP42-205ENST00000465073 EMILIN1Q9Y6C2 1016 aa31.59■■■□□ 2.65
USP42-205ENST00000465073 LY75O60449 1722 aa31.58■■■□□ 2.65
USP42-205ENST00000465073 HMGB2P26583 209 aaKnown RBP31.55■■■□□ 2.64
USP42-205ENST00000465073 PPM1GO15355 546 aaPredicted RBP31.54■■■□□ 2.64
USP42-205ENST00000465073 PCGF6Q9BYE7 350 aa31.54■■■□□ 2.64
USP42-205ENST00000465073 CYP27B1O15528 508 aa31.52■■■□□ 2.64
USP42-205ENST00000465073 WASHC2AQ641Q2 1341 aa31.52■■■□□ 2.64
USP42-205ENST00000465073 MPRIPQ6WCQ1 1025 aa31.49■■■□□ 2.63
USP42-205ENST00000465073 NCAPD2Q15021 1401 aa31.49■■■□□ 2.63
USP42-205ENST00000465073 COL24A1Q17RW2 1714 aa31.48■■■□□ 2.63
USP42-205ENST00000465073 MSH5O43196 834 aa31.47■■■□□ 2.63
USP42-205ENST00000465073 COL23A1Q86Y22 540 aaPredicted RBP31.47■■■□□ 2.63
USP42-205ENST00000465073 KLHL34Q8N239 644 aa31.47■■■□□ 2.63
USP42-205ENST00000465073 SPG7Q9UQ90 795 aa31.47■■■□□ 2.63
USP42-205ENST00000465073 TUBGCP6Q96RT7 1819 aa31.47■■■□□ 2.63
USP42-205ENST00000465073 PALLDQ8WX93 1383 aa31.47■■■□□ 2.63
USP42-205ENST00000465073 NKX1-1Q15270 411 aaPredicted RBP31.46■■■□□ 2.63
USP42-205ENST00000465073 GPR162Q16538 588 aa31.46■■■□□ 2.63
USP42-205ENST00000465073 SMARCC1Q92922 1105 aaPredicted RBP31.46■■■□□ 2.63
USP42-205ENST00000465073 POLKQ9UBT6 870 aa31.46■■■□□ 2.63
USP42-205ENST00000465073 ZNF784Q8NCA9 323 aaPredicted RBP31.45■■■□□ 2.62
USP42-205ENST00000465073 EYA1Q99502 592 aa31.45■■■□□ 2.62
USP42-205ENST00000465073 POLR3GLQ9BT43 218 aa31.45■■■□□ 2.62
USP42-205ENST00000465073 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP31.44■■■□□ 2.62
USP42-205ENST00000465073 ANKRD26Q9UPS8 1709 aa31.42■■■□□ 2.62
USP42-205ENST00000465073 FLAD1Q8NFF5 587 aa31.42■■■□□ 2.62
USP42-205ENST00000465073 UTRNP46939 3433 aa31.41■■■□□ 2.62
USP42-205ENST00000465073 PKD1L3Q7Z443 1732 aa31.41■■■□□ 2.62
USP42-205ENST00000465073 EIF4G2P78344 907 aaKnown RBP eCLIP31.4■■■□□ 2.62
USP42-205ENST00000465073 PIGBQ92521 554 aa31.4■■■□□ 2.62
USP42-205ENST00000465073 MAP2P11137 1827 aaKnown RBP31.38■■■□□ 2.61
USP42-205ENST00000465073 C5P01031 1676 aa31.37■■■□□ 2.61
USP42-205ENST00000465073 NLGN2Q8NFZ4 835 aa31.37■■■□□ 2.61
USP42-205ENST00000465073 CHD4Q14839 1912 aa31.36■■■□□ 2.61
USP42-205ENST00000465073 TNNT2P45379 298 aaPredicted RBP31.36■■■□□ 2.61
USP42-205ENST00000465073 HSPA5P11021 654 aaKnown RBP31.35■■■□□ 2.61
USP42-205ENST00000465073 MSL1Q68DK7 614 aa31.35■■■□□ 2.61
USP42-205ENST00000465073 TOGARAM1Q9Y4F4 1720 aa31.35■■■□□ 2.61
USP42-205ENST00000465073 EIF4A2Q14240 407 aaKnown RBP31.34■■■□□ 2.61
USP42-205ENST00000465073 IFNL2Q8IZJ0 200 aa31.34■■■□□ 2.61
USP42-205ENST00000465073 PELP1Q8IZL8 1130 aaKnown RBP31.34■■■□□ 2.61
USP42-205ENST00000465073 AK7Q96M32 723 aa31.33■■■□□ 2.61
USP42-205ENST00000465073 PANK3Q9H999 370 aa31.33■■■□□ 2.61
USP42-205ENST00000465073 TMOD3Q9NYL9 352 aa31.33■■■□□ 2.61
USP42-205ENST00000465073 ITGB4P16144 1822 aa31.33■■■□□ 2.61
USP42-205ENST00000465073 PHKG2P15735 406 aa31.33■■■□□ 2.61
USP42-205ENST00000465073 PLEKHG2Q9H7P9 1386 aa31.31■■■□□ 2.6
USP42-205ENST00000465073 TAF1LQ8IZX4 1826 aa31.31■■■□□ 2.6
USP42-205ENST00000465073 LOC102724428A0A0B4J2F2 783 aa31.3■■■□□ 2.6
USP42-205ENST00000465073 SIK1P57059 783 aa31.3■■■□□ 2.6
USP42-205ENST00000465073 C4BP0C0L5 1744 aa31.29■■■□□ 2.6
USP42-205ENST00000465073 CD2APQ9Y5K6 639 aa31.27■■■□□ 2.6
USP42-205ENST00000465073 GRIN3BO60391 1043 aa31.27■■■□□ 2.6
USP42-205ENST00000465073 ASAP1Q9ULH1 1129 aa31.27■■■□□ 2.6
USP42-205ENST00000465073 IGSF1Q8N6C5 1336 aa31.26■■■□□ 2.59
USP42-205ENST00000465073 AMIGO3Q86WK7 504 aa31.26■■■□□ 2.59
USP42-205ENST00000465073 CCER1Q8TC90 406 aaPredicted RBP31.26■■■□□ 2.59
USP42-205ENST00000465073 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP31.25■■■□□ 2.59
USP42-205ENST00000465073 PHF14O94880 888 aa31.24■■■□□ 2.59
USP42-205ENST00000465073 SSFA2P28290 1259 aa31.24■■■□□ 2.59
USP42-205ENST00000465073 LINC00116Q8NCU8 138 aa31.24■■■□□ 2.59
USP42-205ENST00000465073 YBX3P16989 372 aaKnown RBP eCLIP31.23■■■□□ 2.596e-9■□□□□ 9.5
USP42-205ENST00000465073 ATG3Q9NT62 314 aa31.22■■■□□ 2.59
USP42-205ENST00000465073 ATP6V1AP38606 617 aa31.21■■■□□ 2.59
USP42-205ENST00000465073 GOLGB1Q14789 3259 aaKnown RBP31.21■■■□□ 2.59
USP42-205ENST00000465073 HSP90AB1P08238 724 aaKnown RBP31.21■■■□□ 2.59
USP42-205ENST00000465073 ITPK1Q13572 414 aa31.21■■■□□ 2.59
USP42-205ENST00000465073 MORC1Q86VD1 984 aa31.21■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms