RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 RRS1Q15050 365 aaKnown RBP15.89■□□□□ 0.13
USP54-209ENST00000464635 ANKRD26Q9UPS8 1709 aa15.88■□□□□ 0.13
USP54-209ENST00000464635 NSD3Q9BZ95 1437 aa15.88■□□□□ 0.13
USP54-209ENST00000464635 PROM2Q8N271 834 aa15.88■□□□□ 0.13
USP54-209ENST00000464635 ACSBG1Q96GR2 724 aa15.88■□□□□ 0.13
USP54-209ENST00000464635 MEGF6O75095 1541 aa15.88■□□□□ 0.13
USP54-209ENST00000464635 RTL1A6NKG5 1358 aa15.87■□□□□ 0.13
USP54-209ENST00000464635 AMPHP49418 695 aa15.87■□□□□ 0.13
USP54-209ENST00000464635 NBPF14Q5TI25 921 aa15.87■□□□□ 0.13
USP54-209ENST00000464635 NSD2O96028 1365 aa15.87■□□□□ 0.13
USP54-209ENST00000464635 PAPPAQ13219 1627 aa15.86■□□□□ 0.13
USP54-209ENST00000464635 CARD14Q9BXL6 1004 aa15.86■□□□□ 0.13
USP54-209ENST00000464635 MAP2P11137 1827 aaKnown RBP15.84■□□□□ 0.13
USP54-209ENST00000464635 TXNRD1Q16881 649 aa15.84■□□□□ 0.13
USP54-209ENST00000464635 MRS2Q9HD23 443 aa15.84■□□□□ 0.13
USP54-209ENST00000464635 USHBP1Q8N6Y0 703 aa15.82■□□□□ 0.12
USP54-209ENST00000464635 PDGFDQ9GZP0 370 aaPredicted RBP15.82■□□□□ 0.12
USP54-209ENST00000464635 LY75O60449 1722 aa15.81■□□□□ 0.12
USP54-209ENST00000464635 NBPF6Q5VWK0 638 aa15.81■□□□□ 0.12
USP54-209ENST00000464635 DDX54Q8TDD1 881 aaKnown RBP15.81■□□□□ 0.12
USP54-209ENST00000464635 PNISRQ8TF01 805 aaKnown RBP15.81■□□□□ 0.12
USP54-209ENST00000464635 NBPF4Q96M43 638 aa15.81■□□□□ 0.12
USP54-209ENST00000464635 TUBGCP6Q96RT7 1819 aa15.81■□□□□ 0.12
USP54-209ENST00000464635 FLT4P35916 1363 aa15.8■□□□□ 0.12
USP54-209ENST00000464635 CGNL1Q0VF96 1302 aa15.8■□□□□ 0.12
USP54-209ENST00000464635 HSP90AB2PQ58FF8 381 aa15.8■□□□□ 0.12
USP54-209ENST00000464635 EMILIN1Q9Y6C2 1016 aa15.8■□□□□ 0.12
USP54-209ENST00000464635 PKD1L3Q7Z443 1732 aa15.8■□□□□ 0.12
USP54-209ENST00000464635 SMG6Q86US8 1419 aaKnown RBP15.79■□□□□ 0.12
USP54-209ENST00000464635 TOGARAM1Q9Y4F4 1720 aa15.79■□□□□ 0.12
USP54-209ENST00000464635 KIF24Q5T7B8 1368 aa15.77■□□□□ 0.12
USP54-209ENST00000464635 YTHDC1Q96MU7 727 aaKnown RBP15.77■□□□□ 0.12
USP54-209ENST00000464635 SPON1Q9HCB6 807 aa15.77■□□□□ 0.12
USP54-209ENST00000464635 QSER1Q2KHR3 1735 aa15.77■□□□□ 0.11
USP54-209ENST00000464635 ITGB4P16144 1822 aa15.76■□□□□ 0.11
USP54-209ENST00000464635 CCDC184Q52MB2 194 aa15.76■□□□□ 0.11
USP54-209ENST00000464635 ZCRB1Q8TBF4 217 aaKnown RBP15.76■□□□□ 0.11
USP54-209ENST00000464635 STK32BQ9NY57 414 aa15.76■□□□□ 0.11
USP54-209ENST00000464635 ZBTB7AO95365 584 aa15.75■□□□□ 0.11
USP54-209ENST00000464635 PPP2R1AP30153 589 aa15.75■□□□□ 0.11
USP54-209ENST00000464635 SLC15A2Q16348 729 aa15.75■□□□□ 0.11
USP54-209ENST00000464635 CC2D1BQ5T0F9 858 aaKnown RBP15.75■□□□□ 0.11
USP54-209ENST00000464635 LRRC4BQ9NT99 713 aa15.75■□□□□ 0.11
USP54-209ENST00000464635 NCAPD2Q15021 1401 aa15.75■□□□□ 0.11
USP54-209ENST00000464635 PRIM1P49642 420 aaKnown RBP15.74■□□□□ 0.11
USP54-209ENST00000464635 ZNF827Q17R98 1081 aa15.74■□□□□ 0.11
USP54-209ENST00000464635 SYTL4Q96C24 671 aaPredicted RBP15.74■□□□□ 0.11
USP54-209ENST00000464635 PPM1GO15355 546 aaPredicted RBP15.73■□□□□ 0.11
USP54-209ENST00000464635 RAPGEF4Q8WZA2 1011 aa15.73■□□□□ 0.11
USP54-209ENST00000464635 KCNQ4P56696 695 aa15.72■□□□□ 0.11
USP54-209ENST00000464635 PPP1R1BQ9UD71 204 aaPredicted RBP15.72■□□□□ 0.11
USP54-209ENST00000464635 ATF5Q9Y2D1 282 aaPredicted RBP15.72■□□□□ 0.11
USP54-209ENST00000464635 ZBED9Q6R2W3 1325 aa15.71■□□□□ 0.11
USP54-209ENST00000464635 TAF1LQ8IZX4 1826 aa15.71■□□□□ 0.11
USP54-209ENST00000464635 C5P01031 1676 aa15.71■□□□□ 0.11
USP54-209ENST00000464635 TATP17735 454 aaPredicted RBP15.71■□□□□ 0.11
USP54-209ENST00000464635 PTGER2P43116 358 aa15.71■□□□□ 0.11
USP54-209ENST00000464635 TNNT2P45379 298 aaPredicted RBP15.7■□□□□ 0.1
USP54-209ENST00000464635 POLKQ9UBT6 870 aa15.7■□□□□ 0.1
USP54-209ENST00000464635 COL24A1Q17RW2 1714 aa15.7■□□□□ 0.1
USP54-209ENST00000464635 MORC1Q86VD1 984 aa15.69■□□□□ 0.1
USP54-209ENST00000464635 FAM9BQ8IZU0 186 aa15.69■□□□□ 0.1
USP54-209ENST00000464635 NGEFQ8N5V2 710 aa15.69■□□□□ 0.1
USP54-209ENST00000464635 PCDH11XQ9BZA7 1347 aa15.68■□□□□ 0.1
USP54-209ENST00000464635 PCDH11YQ9BZA8 1340 aa15.68■□□□□ 0.1
USP54-209ENST00000464635 CYP27B1O15528 508 aa15.68■□□□□ 0.1
USP54-209ENST00000464635 AKT1S1Q96B36 256 aa15.68■□□□□ 0.1
USP54-209ENST00000464635 HNRNPUQ00839 825 aaKnown RBP eCLIP15.67■□□□□ 0.1
USP54-209ENST00000464635 EYA1Q99502 592 aa15.67■□□□□ 0.1
USP54-209ENST00000464635 SGIP1Q9BQI5 828 aa15.67■□□□□ 0.1
USP54-209ENST00000464635 MTFR1LQ9H019 292 aa15.67■□□□□ 0.1
USP54-209ENST00000464635 EIF4A2Q14240 407 aaKnown RBP15.66■□□□□ 0.1
USP54-209ENST00000464635 NCBP3Q53F19 620 aaKnown RBP15.66■□□□□ 0.1
USP54-209ENST00000464635 SLC27A3Q5K4L6 730 aa15.66■□□□□ 0.1
USP54-209ENST00000464635 PNPLA7Q6ZV29 1317 aa15.65■□□□□ 0.1
USP54-209ENST00000464635 CCNL1Q9UK58 526 aaPredicted RBP15.64■□□□□ 0.09
USP54-209ENST00000464635 C4BP0C0L5 1744 aa15.63■□□□□ 0.09
USP54-209ENST00000464635 PALLDQ8WX93 1383 aa15.62■□□□□ 0.09
USP54-209ENST00000464635 CFAP53Q96M91 514 aa15.62■□□□□ 0.09
USP54-209ENST00000464635 UBR3Q6ZT12 1888 aa15.61■□□□□ 0.09
USP54-209ENST00000464635 MPRIPQ6WCQ1 1025 aa15.61■□□□□ 0.09
USP54-209ENST00000464635 FHDC1Q9C0D6 1143 aaPredicted RBP15.61■□□□□ 0.09
USP54-209ENST00000464635 IGSF1Q8N6C5 1336 aa15.61■□□□□ 0.09
USP54-209ENST00000464635 TFCP2L1Q9NZI6 479 aa15.6■□□□□ 0.09
USP54-209ENST00000464635 SPG7Q9UQ90 795 aa15.6■□□□□ 0.09
USP54-209ENST00000464635 WDR43Q15061 677 aaKnown RBP eCLIP15.59■□□□□ 0.09
USP54-209ENST00000464635 NKX1-1Q15270 411 aaPredicted RBP15.59■□□□□ 0.09
USP54-209ENST00000464635 PHKG2P15735 406 aa15.58■□□□□ 0.08
USP54-209ENST00000464635 CNGB1Q14028 1251 aaPredicted RBP15.58■□□□□ 0.08
USP54-209ENST00000464635 PIGBQ92521 554 aa15.58■□□□□ 0.08
USP54-209ENST00000464635 ARXQ96QS3 562 aa15.58■□□□□ 0.08
USP54-209ENST00000464635 SYT17Q9BSW7 474 aa15.58■□□□□ 0.08
USP54-209ENST00000464635 VIRMAQ69YN4 1812 aaKnown RBP15.58■□□□□ 0.08
USP54-209ENST00000464635 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.57■□□□□ 0.08
USP54-209ENST00000464635 ADAMTS8Q9UP79 889 aa15.57■□□□□ 0.08
USP54-209ENST00000464635 MTHFSP49914 203 aa15.56■□□□□ 0.08
USP54-209ENST00000464635 COL23A1Q86Y22 540 aaPredicted RBP15.56■□□□□ 0.08
USP54-209ENST00000464635 AEBP1Q8IUX7 1158 aa15.56■□□□□ 0.08
USP54-209ENST00000464635 SLC16A10Q8TF71 515 aa15.56■□□□□ 0.08
USP54-209ENST00000464635 KDM6AO15550 1401 aaPredicted RBP15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms