RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 AMPHP49418 695 aa20.49■□□□□ 0.87
SMC1A-204ENST00000463684 IFFO2Q5TF58 517 aa20.49■□□□□ 0.87
SMC1A-204ENST00000463684 COG3Q96JB2 828 aa20.49■□□□□ 0.87
SMC1A-204ENST00000463684 GOLGB1Q14789 3259 aaKnown RBP20.49■□□□□ 0.87
SMC1A-204ENST00000463684 A0A1W2PP64 1363 aa20.48■□□□□ 0.87
SMC1A-204ENST00000463684 YBX3P16989 372 aaKnown RBP eCLIP20.48■□□□□ 0.874e-9■■■□□ 16
SMC1A-204ENST00000463684 PUS7Q96PZ0 661 aaKnown RBP20.48■□□□□ 0.87
SMC1A-204ENST00000463684 QSER1Q2KHR3 1735 aa20.47■□□□□ 0.87
SMC1A-204ENST00000463684 HOXC9P31274 260 aa20.47■□□□□ 0.87
SMC1A-204ENST00000463684 COL23A1Q86Y22 540 aaPredicted RBP20.47■□□□□ 0.87
SMC1A-204ENST00000463684 USP47Q96K76 1375 aa20.46■□□□□ 0.87
SMC1A-204ENST00000463684 HMGB2P26583 209 aaKnown RBP20.46■□□□□ 0.87
SMC1A-204ENST00000463684 MAP3K19Q56UN5 1328 aa20.45■□□□□ 0.86
SMC1A-204ENST00000463684 NSD2O96028 1365 aa20.45■□□□□ 0.86
SMC1A-204ENST00000463684 COL24A1Q17RW2 1714 aa20.44■□□□□ 0.86
SMC1A-204ENST00000463684 MSL1Q68DK7 614 aa20.43■□□□□ 0.86
SMC1A-204ENST00000463684 FAM208AQ9UK61 1670 aaKnown RBP20.42■□□□□ 0.86
SMC1A-204ENST00000463684 FLAD1Q8NFF5 587 aa20.42■□□□□ 0.86
SMC1A-204ENST00000463684 CD2APQ9Y5K6 639 aa20.42■□□□□ 0.86
SMC1A-204ENST00000463684 FBLN1P23142 703 aa20.41■□□□□ 0.86
SMC1A-204ENST00000463684 RAPGEF4Q8WZA2 1011 aa20.41■□□□□ 0.86
SMC1A-204ENST00000463684 CGNL1Q0VF96 1302 aa20.41■□□□□ 0.86
SMC1A-204ENST00000463684 SHANK3Q9BYB0 1731 aa20.41■□□□□ 0.86
SMC1A-204ENST00000463684 GPBP1L1Q9HC44 474 aaPredicted RBP20.4■□□□□ 0.86
SMC1A-204ENST00000463684 NBPF6Q5VWK0 638 aa20.39■□□□□ 0.85
SMC1A-204ENST00000463684 NBPF4Q96M43 638 aa20.39■□□□□ 0.85
SMC1A-204ENST00000463684 LY75O60449 1722 aa20.39■□□□□ 0.85
SMC1A-204ENST00000463684 DOT1LQ8TEK3 1739 aa20.39■□□□□ 0.85
SMC1A-204ENST00000463684 MEGF6O75095 1541 aa20.38■□□□□ 0.85
SMC1A-204ENST00000463684 ATP10DQ9P241 1426 aa20.38■□□□□ 0.85
SMC1A-204ENST00000463684 SLC24A1O60721 1099 aa20.38■□□□□ 0.85
SMC1A-204ENST00000463684 TATP17735 454 aaPredicted RBP20.38■□□□□ 0.85
SMC1A-204ENST00000463684 CEP350Q5VT06 3117 aa20.38■□□□□ 0.85
SMC1A-204ENST00000463684 TUBGCP6Q96RT7 1819 aa20.37■□□□□ 0.85
SMC1A-204ENST00000463684 USHBP1Q8N6Y0 703 aa20.37■□□□□ 0.85
SMC1A-204ENST00000463684 RRS1Q15050 365 aaKnown RBP20.36■□□□□ 0.85
SMC1A-204ENST00000463684 SMG6Q86US8 1419 aaKnown RBP20.36■□□□□ 0.85
SMC1A-204ENST00000463684 RTL1A6NKG5 1358 aa20.35■□□□□ 0.85
SMC1A-204ENST00000463684 MPRIPQ6WCQ1 1025 aa20.35■□□□□ 0.85
SMC1A-204ENST00000463684 PCDH11XQ9BZA7 1347 aa20.34■□□□□ 0.85
SMC1A-204ENST00000463684 PCDH11YQ9BZA8 1340 aa20.34■□□□□ 0.85
SMC1A-204ENST00000463684 ZNF526Q8TF50 670 aaPredicted RBP20.33■□□□□ 0.85
SMC1A-204ENST00000463684 SMARCC1Q92922 1105 aaPredicted RBP20.33■□□□□ 0.85
SMC1A-204ENST00000463684 AK7Q96M32 723 aa20.33■□□□□ 0.85
SMC1A-204ENST00000463684 PALLDQ8WX93 1383 aa20.33■□□□□ 0.84
SMC1A-204ENST00000463684 ST20-MTHFSA0A0A6YYL1 179 aa20.32■□□□□ 0.84
SMC1A-204ENST00000463684 HSPA6P17066 643 aa20.32■□□□□ 0.84
SMC1A-204ENST00000463684 TESK2Q96S53 571 aa20.32■□□□□ 0.84
SMC1A-204ENST00000463684 TONSLQ96HA7 1378 aa20.32■□□□□ 0.84
SMC1A-204ENST00000463684 GGNBP2Q9H3C7 697 aa20.31■□□□□ 0.84
SMC1A-204ENST00000463684 FYB1O15117 783 aa20.3■□□□□ 0.84
SMC1A-204ENST00000463684 PHF14O94880 888 aa20.29■□□□□ 0.84
SMC1A-204ENST00000463684 IGSF1Q8N6C5 1336 aa20.28■□□□□ 0.84
SMC1A-204ENST00000463684 HSP90AB2PQ58FF8 381 aa20.28■□□□□ 0.84
SMC1A-204ENST00000463684 RGPD2P0DJD1 1756 aa20.28■□□□□ 0.84
SMC1A-204ENST00000463684 ADCY9O60503 1353 aa20.27■□□□□ 0.84
SMC1A-204ENST00000463684 INSRP06213 1382 aa20.27■□□□□ 0.84
SMC1A-204ENST00000463684 WWC3Q9ULE0 1092 aa20.27■□□□□ 0.84
SMC1A-204ENST00000463684 C5P01031 1676 aa20.26■□□□□ 0.83
SMC1A-204ENST00000463684 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.26■□□□□ 0.83
SMC1A-204ENST00000463684 CYP27B1O15528 508 aa20.26■□□□□ 0.83
SMC1A-204ENST00000463684 NSD3Q9BZ95 1437 aa20.26■□□□□ 0.83
SMC1A-204ENST00000463684 FLT4P35916 1363 aa20.24■□□□□ 0.83
SMC1A-204ENST00000463684 SSFA2P28290 1259 aa20.24■□□□□ 0.83
SMC1A-204ENST00000463684 PIGBQ92521 554 aa20.24■□□□□ 0.83
SMC1A-204ENST00000463684 TMF1P82094 1093 aa20.23■□□□□ 0.83
SMC1A-204ENST00000463684 SMIM5Q71RC9 77 aa20.23■□□□□ 0.83
SMC1A-204ENST00000463684 AMIGO3Q86WK7 504 aa20.23■□□□□ 0.83
SMC1A-204ENST00000463684 KIF24Q5T7B8 1368 aa20.22■□□□□ 0.83
SMC1A-204ENST00000463684 SPG7Q9UQ90 795 aa20.22■□□□□ 0.83
SMC1A-204ENST00000463684 LOC102724428A0A0B4J2F2 783 aa20.21■□□□□ 0.83
SMC1A-204ENST00000463684 SIK1P57059 783 aa20.21■□□□□ 0.83
SMC1A-204ENST00000463684 C4BP0C0L5 1744 aa20.21■□□□□ 0.83
SMC1A-204ENST00000463684 NKX1-1Q15270 411 aaPredicted RBP20.2■□□□□ 0.82
SMC1A-204ENST00000463684 KIF3CO14782 793 aa20.19■□□□□ 0.82
SMC1A-204ENST00000463684 LINC00116Q8NCU8 138 aa20.19■□□□□ 0.82
SMC1A-204ENST00000463684 TMOD3Q9NYL9 352 aa20.19■□□□□ 0.82
SMC1A-204ENST00000463684 GNPATO15228 680 aa20.18■□□□□ 0.82
SMC1A-204ENST00000463684 CDCA8Q53HL2 280 aa20.18■□□□□ 0.82
SMC1A-204ENST00000463684 TAF1LQ8IZX4 1826 aa20.18■□□□□ 0.82
SMC1A-204ENST00000463684 PPM1GO15355 546 aaPredicted RBP20.17■□□□□ 0.82
SMC1A-204ENST00000463684 ATP6V1AP38606 617 aa20.17■□□□□ 0.82
SMC1A-204ENST00000463684 APLP1P51693 650 aa20.16■□□□□ 0.82
SMC1A-204ENST00000463684 EMILIN1Q9Y6C2 1016 aa20.16■□□□□ 0.82
SMC1A-204ENST00000463684 MMP10P09238 476 aa20.15■□□□□ 0.82
SMC1A-204ENST00000463684 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.15■□□□□ 0.821e-7■■■■□ 23.7
SMC1A-204ENST00000463684 ASAP1Q9ULH1 1129 aa20.15■□□□□ 0.82
SMC1A-204ENST00000463684 TGFB2P61812 414 aa20.14■□□□□ 0.81
SMC1A-204ENST00000463684 ITPK1Q13572 414 aa20.14■□□□□ 0.81
SMC1A-204ENST00000463684 TOMM70O94826 608 aa20.13■□□□□ 0.81
SMC1A-204ENST00000463684 TRAPPC3LQ5T215 181 aa20.13■□□□□ 0.81
SMC1A-204ENST00000463684 IFNL2Q8IZJ0 200 aa20.13■□□□□ 0.81
SMC1A-204ENST00000463684 BCS1LQ9Y276 419 aa20.13■□□□□ 0.81
SMC1A-204ENST00000463684 NLGN1Q8N2Q7 840 aa20.12■□□□□ 0.81
SMC1A-204ENST00000463684 RTCBQ9Y3I0 505 aaKnown RBP20.12■□□□□ 0.81
SMC1A-204ENST00000463684 UBR3Q6ZT12 1888 aa20.11■□□□□ 0.81
SMC1A-204ENST00000463684 TOGARAM1Q9Y4F4 1720 aa20.11■□□□□ 0.81
SMC1A-204ENST00000463684 ARHGAP27Q6ZUM4 889 aa20.11■□□□□ 0.81
SMC1A-204ENST00000463684 EYA1Q99502 592 aa20.11■□□□□ 0.81
SMC1A-204ENST00000463684 ITGB4P16144 1822 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms