RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 RGPD1P0DJD0 1748 aa26.52■■□□□ 1.84
COL9A3-204ENST00000463487 SULT6B1Q6IMI4 303 aa26.51■■□□□ 1.83
COL9A3-204ENST00000463487 SPG7Q9UQ90 795 aa26.51■■□□□ 1.83
COL9A3-204ENST00000463487 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.5■■□□□ 1.831e-10■□□□□ 10
COL9A3-204ENST00000463487 KDRP35968 1356 aa26.49■■□□□ 1.83
COL9A3-204ENST00000463487 PCDH11XQ9BZA7 1347 aa26.49■■□□□ 1.83
COL9A3-204ENST00000463487 PCDH11YQ9BZA8 1340 aa26.49■■□□□ 1.83
COL9A3-204ENST00000463487 FAM182BQ5T319 152 aa26.48■■□□□ 1.83
COL9A3-204ENST00000463487 CCDC125Q86Z20 511 aa26.48■■□□□ 1.83
COL9A3-204ENST00000463487 DDX54Q8TDD1 881 aaKnown RBP26.48■■□□□ 1.83
COL9A3-204ENST00000463487 SF3B2Q13435 895 aaKnown RBP26.47■■□□□ 1.83
COL9A3-204ENST00000463487 MARCH10Q8NA82 808 aaPredicted RBP26.47■■□□□ 1.83
COL9A3-204ENST00000463487 PKD1L3Q7Z443 1732 aa26.45■■□□□ 1.83
COL9A3-204ENST00000463487 AMOTQ4VCS5 1084 aa26.45■■□□□ 1.82
COL9A3-204ENST00000463487 PLEKHO1Q53GL0 409 aaPredicted RBP26.45■■□□□ 1.82
COL9A3-204ENST00000463487 BCL9O00512 1426 aa26.45■■□□□ 1.82
COL9A3-204ENST00000463487 HMOX1P09601 288 aa26.44■■□□□ 1.82
COL9A3-204ENST00000463487 AEBP1Q8IUX7 1158 aa26.44■■□□□ 1.82
COL9A3-204ENST00000463487 UPF1Q92900 1129 aaKnown RBP eCLIP26.44■■□□□ 1.82
COL9A3-204ENST00000463487 U2AF1L5P0DN76 240 aaPredicted RBP26.43■■□□□ 1.82
COL9A3-204ENST00000463487 U2AF1Q01081 240 aaKnown RBP eCLIP26.43■■□□□ 1.82
COL9A3-204ENST00000463487 SHANK3Q9BYB0 1731 aa26.39■■□□□ 1.82
COL9A3-204ENST00000463487 NEFMP07197 916 aa26.39■■□□□ 1.82
COL9A3-204ENST00000463487 PNNQ9H307 717 aaKnown RBP26.39■■□□□ 1.82
COL9A3-204ENST00000463487 C1orf141Q5JVX7 400 aa26.38■■□□□ 1.81
COL9A3-204ENST00000463487 IFNL2Q8IZJ0 200 aa26.38■■□□□ 1.81
COL9A3-204ENST00000463487 FCHSD2O94868 740 aa26.37■■□□□ 1.81
COL9A3-204ENST00000463487 TRIM37O94972 964 aa26.37■■□□□ 1.81
COL9A3-204ENST00000463487 HSP90AB1P08238 724 aaKnown RBP26.37■■□□□ 1.81
COL9A3-204ENST00000463487 WDR43Q15061 677 aaKnown RBP eCLIP26.36■■□□□ 1.81
COL9A3-204ENST00000463487 ZNF530Q6P9A1 599 aaPredicted RBP26.36■■□□□ 1.81
COL9A3-204ENST00000463487 EP400Q96L91 3159 aa26.36■■□□□ 1.81
COL9A3-204ENST00000463487 CYP27B1O15528 508 aa26.35■■□□□ 1.81
COL9A3-204ENST00000463487 BAG6P46379 1132 aa26.34■■□□□ 1.81
COL9A3-204ENST00000463487 BCL11BQ9C0K0 894 aaPredicted RBP26.34■■□□□ 1.81
COL9A3-204ENST00000463487 SBF2Q86WG5 1849 aa26.33■■□□□ 1.81
COL9A3-204ENST00000463487 PHKG2P15735 406 aa26.33■■□□□ 1.81
COL9A3-204ENST00000463487 PRKAR2BP31323 418 aa26.33■■□□□ 1.81
COL9A3-204ENST00000463487 RSPH6AQ9H0K4 717 aa26.33■■□□□ 1.81
COL9A3-204ENST00000463487 GAS2L2Q8NHY3 880 aa26.32■■□□□ 1.8
COL9A3-204ENST00000463487 NHSQ6T4R5 1651 aa26.31■■□□□ 1.8
COL9A3-204ENST00000463487 ACSBG1Q96GR2 724 aa26.31■■□□□ 1.8
COL9A3-204ENST00000463487 APBA3O96018 575 aa26.3■■□□□ 1.8
COL9A3-204ENST00000463487 NKX1-1Q15270 411 aaPredicted RBP26.3■■□□□ 1.8
COL9A3-204ENST00000463487 SYTL4Q96C24 671 aaPredicted RBP26.3■■□□□ 1.8
COL9A3-204ENST00000463487 KAT6BQ8WYB5 2073 aa26.3■■□□□ 1.8
COL9A3-204ENST00000463487 TNS1Q9HBL0 1735 aaKnown RBP26.3■■□□□ 1.8
COL9A3-204ENST00000463487 DOT1LQ8TEK3 1739 aa26.29■■□□□ 1.8
COL9A3-204ENST00000463487 AKAP4Q5JQC9 854 aa26.29■■□□□ 1.8
COL9A3-204ENST00000463487 DCAF5Q96JK2 942 aa26.29■■□□□ 1.8
COL9A3-204ENST00000463487 MAPK8IP3Q9UPT6 1336 aa26.27■■□□□ 1.8
COL9A3-204ENST00000463487 PRIM1P49642 420 aaKnown RBP26.26■■□□□ 1.79
COL9A3-204ENST00000463487 MTHFSDQ2M296 383 aaKnown RBP26.26■■□□□ 1.79
COL9A3-204ENST00000463487 KCNQ2O43526 872 aa26.25■■□□□ 1.79
COL9A3-204ENST00000463487 MRS2Q9HD23 443 aa26.25■■□□□ 1.79
COL9A3-204ENST00000463487 DIEXFQ68CQ4 756 aaKnown RBP26.23■■□□□ 1.79
COL9A3-204ENST00000463487 MAP3K5Q99683 1374 aa26.22■■□□□ 1.79
COL9A3-204ENST00000463487 ERVV-2B6SEH9 535 aa26.22■■□□□ 1.79
COL9A3-204ENST00000463487 TMOD3Q9NYL9 352 aa26.22■■□□□ 1.79
COL9A3-204ENST00000463487 GNAT3A8MTJ3 354 aa26.21■■□□□ 1.79
COL9A3-204ENST00000463487 PLSCR1O15162 318 aa26.21■■□□□ 1.79
COL9A3-204ENST00000463487 PHACTR3Q96KR7 559 aa26.21■■□□□ 1.79
COL9A3-204ENST00000463487 MPRIPQ6WCQ1 1025 aa26.2■■□□□ 1.78
COL9A3-204ENST00000463487 DEFB132Q7Z7B7 95 aa26.2■■□□□ 1.78
COL9A3-204ENST00000463487 BTAF1O14981 1849 aa26.2■■□□□ 1.78
COL9A3-204ENST00000463487 EN1Q05925 392 aaPredicted RBP26.19■■□□□ 1.78
COL9A3-204ENST00000463487 RTF1Q92541 710 aaKnown RBP26.19■■□□□ 1.78
COL9A3-204ENST00000463487 RGPD3A6NKT7 1758 aaPredicted RBP26.19■■□□□ 1.78
COL9A3-204ENST00000463487 RGPD4Q7Z3J3 1758 aa26.19■■□□□ 1.78
COL9A3-204ENST00000463487 TOGARAM1Q9Y4F4 1720 aa26.19■■□□□ 1.78
COL9A3-204ENST00000463487 KDM6AO15550 1401 aaPredicted RBP26.18■■□□□ 1.78
COL9A3-204ENST00000463487 CABP4P57796 275 aa26.18■■□□□ 1.78
COL9A3-204ENST00000463487 PLEKHF1Q96S99 279 aa26.18■■□□□ 1.78
COL9A3-204ENST00000463487 PTF1AQ7RTS3 328 aa26.17■■□□□ 1.78
COL9A3-204ENST00000463487 ADAMTS8Q9UP79 889 aa26.17■■□□□ 1.78
COL9A3-204ENST00000463487 ITGB4P16144 1822 aa26.16■■□□□ 1.78
COL9A3-204ENST00000463487 RUNDC1Q96C34 613 aa26.16■■□□□ 1.78
COL9A3-204ENST00000463487 SMARCC1Q92922 1105 aaPredicted RBP26.15■■□□□ 1.78
COL9A3-204ENST00000463487 CAMKK2Q96RR4 588 aa26.15■■□□□ 1.78
COL9A3-204ENST00000463487 SCN11AQ9UI33 1791 aa26.15■■□□□ 1.78
COL9A3-204ENST00000463487 RNMTO43148 476 aaKnown RBP26.14■■□□□ 1.78
COL9A3-204ENST00000463487 HTATSF1O43719 755 aaKnown RBP26.14■■□□□ 1.78
COL9A3-204ENST00000463487 NFE2L2Q16236 605 aa26.14■■□□□ 1.78
COL9A3-204ENST00000463487 HMGB2P26583 209 aaKnown RBP26.13■■□□□ 1.77
COL9A3-204ENST00000463487 EZH2Q15910 746 aaKnown RBP26.13■■□□□ 1.77
COL9A3-204ENST00000463487 CCDC184Q52MB2 194 aa26.13■■□□□ 1.77
COL9A3-204ENST00000463487 PIGBQ92521 554 aa26.13■■□□□ 1.77
COL9A3-204ENST00000463487 TEFQ10587 303 aa26.12■■□□□ 1.77
COL9A3-204ENST00000463487 LMOD3Q0VAK6 560 aa26.11■■□□□ 1.77
COL9A3-204ENST00000463487 CCDC146Q8IYE0 955 aa26.11■■□□□ 1.77
COL9A3-204ENST00000463487 PNISRQ8TF01 805 aaKnown RBP26.11■■□□□ 1.77
COL9A3-204ENST00000463487 SLC52A2Q9HAB3 445 aa26.11■■□□□ 1.77
COL9A3-204ENST00000463487 ADAMTS7Q9UKP4 1686 aa26.1■■□□□ 1.77
COL9A3-204ENST00000463487 LGR6Q9HBX8 967 aa26.1■■□□□ 1.77
COL9A3-204ENST00000463487 MRC1P22897 1456 aa26.1■■□□□ 1.77
COL9A3-204ENST00000463487 CCER2I3L3R5 266 aa26.09■■□□□ 1.77
COL9A3-204ENST00000463487 SLC27A3Q5K4L6 730 aa26.09■■□□□ 1.77
COL9A3-204ENST00000463487 NFATC2IPQ8NCF5 419 aa26.09■■□□□ 1.77
COL9A3-204ENST00000463487 VIRMAQ69YN4 1812 aaKnown RBP26.09■■□□□ 1.77
COL9A3-204ENST00000463487 PALLDQ8WX93 1383 aa26.08■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms