RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 LY75O60449 1722 aa19.27■□□□□ 0.68
USP4-206ENST00000461553 QSER1Q2KHR3 1735 aa19.25■□□□□ 0.67
USP4-206ENST00000461553 HSP90AB2PQ58FF8 381 aa19.25■□□□□ 0.67
USP4-206ENST00000461553 NBPF6Q5VWK0 638 aa19.25■□□□□ 0.67
USP4-206ENST00000461553 USHBP1Q8N6Y0 703 aa19.25■□□□□ 0.67
USP4-206ENST00000461553 RAPGEF4Q8WZA2 1011 aa19.25■□□□□ 0.67
USP4-206ENST00000461553 NBPF4Q96M43 638 aa19.25■□□□□ 0.67
USP4-206ENST00000461553 EMILIN1Q9Y6C2 1016 aa19.25■□□□□ 0.67
USP4-206ENST00000461553 PROM2Q8N271 834 aa19.24■□□□□ 0.67
USP4-206ENST00000461553 ZCRB1Q8TBF4 217 aaKnown RBP19.24■□□□□ 0.67
USP4-206ENST00000461553 STK32BQ9NY57 414 aa19.24■□□□□ 0.67
USP4-206ENST00000461553 TUBGCP6Q96RT7 1819 aa19.23■□□□□ 0.67
USP4-206ENST00000461553 PPM1GO15355 546 aaPredicted RBP19.22■□□□□ 0.67
USP4-206ENST00000461553 TATP17735 454 aaPredicted RBP19.22■□□□□ 0.67
USP4-206ENST00000461553 SPON1Q9HCB6 807 aa19.22■□□□□ 0.67
USP4-206ENST00000461553 ITGB4P16144 1822 aa19.22■□□□□ 0.67
USP4-206ENST00000461553 TOGARAM1Q9Y4F4 1720 aa19.22■□□□□ 0.67
USP4-206ENST00000461553 NSD2O96028 1365 aa19.21■□□□□ 0.67
USP4-206ENST00000461553 NCAPD2Q15021 1401 aa19.21■□□□□ 0.67
USP4-206ENST00000461553 SYTL4Q96C24 671 aaPredicted RBP19.21■□□□□ 0.67
USP4-206ENST00000461553 PCDH11XQ9BZA7 1347 aa19.21■□□□□ 0.67
USP4-206ENST00000461553 PCDH11YQ9BZA8 1340 aa19.21■□□□□ 0.67
USP4-206ENST00000461553 SLC15A2Q16348 729 aa19.19■□□□□ 0.66
USP4-206ENST00000461553 PPP1R1BQ9UD71 204 aaPredicted RBP19.19■□□□□ 0.66
USP4-206ENST00000461553 PANK3Q9H999 370 aa19.18■□□□□ 0.66
USP4-206ENST00000461553 WASHC2AQ641Q2 1341 aa19.18■□□□□ 0.66
USP4-206ENST00000461553 C5P01031 1676 aa19.17■□□□□ 0.66
USP4-206ENST00000461553 TNNT2P45379 298 aaPredicted RBP19.16■□□□□ 0.66
USP4-206ENST00000461553 PRIM1P49642 420 aaKnown RBP19.16■□□□□ 0.66
USP4-206ENST00000461553 TAF1LQ8IZX4 1826 aa19.16■□□□□ 0.66
USP4-206ENST00000461553 SLC27A3Q5K4L6 730 aa19.15■□□□□ 0.66
USP4-206ENST00000461553 POLKQ9UBT6 870 aa19.14■□□□□ 0.65
USP4-206ENST00000461553 ZBTB7AO95365 584 aa19.13■□□□□ 0.65
USP4-206ENST00000461553 PDGFDQ9GZP0 370 aaPredicted RBP19.13■□□□□ 0.65
USP4-206ENST00000461553 LRRC4BQ9NT99 713 aa19.12■□□□□ 0.65
USP4-206ENST00000461553 KIF7Q2M1P5 1343 aa19.11■□□□□ 0.65
USP4-206ENST00000461553 ZNF827Q17R98 1081 aa19.11■□□□□ 0.65
USP4-206ENST00000461553 KNSTRNQ9Y448 316 aa19.11■□□□□ 0.65
USP4-206ENST00000461553 PLEKHG2Q9H7P9 1386 aa19.1■□□□□ 0.65
USP4-206ENST00000461553 EYA1Q99502 592 aa19.1■□□□□ 0.65
USP4-206ENST00000461553 MTFR1LQ9H019 292 aa19.1■□□□□ 0.65
USP4-206ENST00000461553 SPG7Q9UQ90 795 aa19.1■□□□□ 0.65
USP4-206ENST00000461553 COL24A1Q17RW2 1714 aa19.1■□□□□ 0.65
USP4-206ENST00000461553 CYP27B1O15528 508 aa19.09■□□□□ 0.65
USP4-206ENST00000461553 EIF4A2Q14240 407 aaKnown RBP19.09■□□□□ 0.65
USP4-206ENST00000461553 CCNL1Q9UK58 526 aaPredicted RBP19.09■□□□□ 0.65
USP4-206ENST00000461553 MORC1Q86VD1 984 aa19.08■□□□□ 0.64
USP4-206ENST00000461553 AKT1S1Q96B36 256 aa19.07■□□□□ 0.64
USP4-206ENST00000461553 ATF5Q9Y2D1 282 aaPredicted RBP19.07■□□□□ 0.64
USP4-206ENST00000461553 PALLDQ8WX93 1383 aa19.06■□□□□ 0.64
USP4-206ENST00000461553 IGSF1Q8N6C5 1336 aa19.06■□□□□ 0.64
USP4-206ENST00000461553 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.06■□□□□ 0.64
USP4-206ENST00000461553 C4BP0C0L5 1744 aa19.05■□□□□ 0.64
USP4-206ENST00000461553 PTGER2P43116 358 aa19.05■□□□□ 0.64
USP4-206ENST00000461553 KCNQ4P56696 695 aa19.05■□□□□ 0.64
USP4-206ENST00000461553 MPRIPQ6WCQ1 1025 aa19.05■□□□□ 0.64
USP4-206ENST00000461553 VIRMAQ69YN4 1812 aaKnown RBP19.04■□□□□ 0.64
USP4-206ENST00000461553 TFCP2L1Q9NZI6 479 aa19.04■□□□□ 0.64
USP4-206ENST00000461553 PNPLA7Q6ZV29 1317 aa19.03■□□□□ 0.64
USP4-206ENST00000461553 UBR3Q6ZT12 1888 aa19.03■□□□□ 0.64
USP4-206ENST00000461553 DCAF8L1A6NGE4 600 aa19.02■□□□□ 0.64
USP4-206ENST00000461553 HMGB2P26583 209 aaKnown RBP19.02■□□□□ 0.64
USP4-206ENST00000461553 NKX1-1Q15270 411 aaPredicted RBP19.02■□□□□ 0.64
USP4-206ENST00000461553 IFNL2Q8IZJ0 200 aa19.02■□□□□ 0.64
USP4-206ENST00000461553 PHKG2P15735 406 aa19.01■□□□□ 0.63
USP4-206ENST00000461553 AMER1Q5JTC6 1135 aaPredicted RBP19.01■□□□□ 0.63
USP4-206ENST00000461553 SLC16A10Q8TF71 515 aa19.01■□□□□ 0.63
USP4-206ENST00000461553 SMARCC1Q92922 1105 aaPredicted RBP19.01■□□□□ 0.63
USP4-206ENST00000461553 SGIP1Q9BQI5 828 aa19■□□□□ 0.63
USP4-206ENST00000461553 TMOD3Q9NYL9 352 aa19■□□□□ 0.63
USP4-206ENST00000461553 SCN11AQ9UI33 1791 aa18.99■□□□□ 0.63
USP4-206ENST00000461553 POLD1P28340 1107 aa18.98■□□□□ 0.63
USP4-206ENST00000461553 ARXQ96QS3 562 aa18.98■□□□□ 0.63
USP4-206ENST00000461553 FHDC1Q9C0D6 1143 aaPredicted RBP18.98■□□□□ 0.63
USP4-206ENST00000461553 ZNF831Q5JPB2 1677 aa18.98■□□□□ 0.63
USP4-206ENST00000461553 CHD4Q14839 1912 aa18.98■□□□□ 0.63
USP4-206ENST00000461553 PIGBQ92521 554 aa18.97■□□□□ 0.63
USP4-206ENST00000461553 KDRP35968 1356 aa18.96■□□□□ 0.63
USP4-206ENST00000461553 MAP3K5Q99683 1374 aa18.96■□□□□ 0.63
USP4-206ENST00000461553 MSH5O43196 834 aa18.96■□□□□ 0.63
USP4-206ENST00000461553 HSP90AB1P08238 724 aaKnown RBP18.96■□□□□ 0.63
USP4-206ENST00000461553 PLEKHO1Q53GL0 409 aaPredicted RBP18.96■□□□□ 0.63
USP4-206ENST00000461553 COL5A3P25940 1745 aaPredicted RBP18.96■□□□□ 0.63
USP4-206ENST00000461553 AMOTQ4VCS5 1084 aa18.95■□□□□ 0.62
USP4-206ENST00000461553 ZNF530Q6P9A1 599 aaPredicted RBP18.95■□□□□ 0.62
USP4-206ENST00000461553 AEBP1Q8IUX7 1158 aa18.95■□□□□ 0.62
USP4-206ENST00000461553 KDM6AO15550 1401 aaPredicted RBP18.94■□□□□ 0.62
USP4-206ENST00000461553 UTRNP46939 3433 aa18.94■□□□□ 0.62
USP4-206ENST00000461553 CC2D1BQ5T0F9 858 aaKnown RBP18.94■□□□□ 0.62
USP4-206ENST00000461553 AK7Q96M32 723 aa18.94■□□□□ 0.62
USP4-206ENST00000461553 SYT17Q9BSW7 474 aa18.94■□□□□ 0.62
USP4-206ENST00000461553 NPC1L1Q9UHC9 1359 aa18.93■□□□□ 0.62
USP4-206ENST00000461553 IL13P35225 146 aa18.93■□□□□ 0.62
USP4-206ENST00000461553 C1orf141Q5JVX7 400 aa18.93■□□□□ 0.62
USP4-206ENST00000461553 SULT6B1Q6IMI4 303 aa18.93■□□□□ 0.62
USP4-206ENST00000461553 LOC102724428A0A0B4J2F2 783 aa18.92■□□□□ 0.62
USP4-206ENST00000461553 PER1O15534 1290 aaPredicted RBP18.92■□□□□ 0.62
USP4-206ENST00000461553 SIK1P57059 783 aa18.92■□□□□ 0.62
USP4-206ENST00000461553 COL23A1Q86Y22 540 aaPredicted RBP18.92■□□□□ 0.62
USP4-206ENST00000461553 KLHL34Q8N239 644 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms