RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 SH3BP5LQ7L8J4 393 aa11.94□□□□□ -0.5
USP54-208ENST00000461520 SH3RF1Q7Z6J0 888 aa11.94□□□□□ -0.5
USP54-208ENST00000461520 PCMTD1Q96MG8 357 aaPredicted RBP11.94□□□□□ -0.5
USP54-208ENST00000461520 CDK15Q96Q40 435 aa11.94□□□□□ -0.5
USP54-208ENST00000461520 MAGEB6P1A0A0J9YX57 407 aa11.93□□□□□ -0.5
USP54-208ENST00000461520 ADH1CP00326 375 aa11.93□□□□□ -0.5
USP54-208ENST00000461520 UBTFP17480 764 aaKnown RBP11.93□□□□□ -0.5
USP54-208ENST00000461520 RFC5P40937 340 aa11.93□□□□□ -0.5
USP54-208ENST00000461520 GOPCQ9HD26 462 aa11.93□□□□□ -0.5
USP54-208ENST00000461520 NEO1Q92859 1461 aa11.93□□□□□ -0.5
USP54-208ENST00000461520 BMP1P13497 986 aa11.92□□□□□ -0.5
USP54-208ENST00000461520 SNRPBP14678 240 aaKnown RBP11.92□□□□□ -0.5
USP54-208ENST00000461520 EPS8L1Q8TE68 723 aa11.92□□□□□ -0.5
USP54-208ENST00000461520 CARD14Q9BXL6 1004 aa11.92□□□□□ -0.5
USP54-208ENST00000461520 GRM5P41594 1212 aa11.91□□□□□ -0.5
USP54-208ENST00000461520 C1QTNF2Q9BXJ5 285 aa11.91□□□□□ -0.5
USP54-208ENST00000461520 HMX1Q9NP08 348 aaPredicted RBP11.91□□□□□ -0.5
USP54-208ENST00000461520 FKBPLQ9UIM3 349 aa11.91□□□□□ -0.5
USP54-208ENST00000461520 ADAMTSL3P82987 1691 aa11.91□□□□□ -0.5
USP54-208ENST00000461520 USP17L8P0C7I0 530 aa11.9□□□□□ -0.5
USP54-208ENST00000461520 TRIM46Q7Z4K8 759 aa11.9□□□□□ -0.5
USP54-208ENST00000461520 FMN1Q68DA7 1419 aa11.89□□□□□ -0.51
USP54-208ENST00000461520 WDR4P57081 412 aaKnown RBP11.89□□□□□ -0.51
USP54-208ENST00000461520 GPKOWQ92917 476 aaPredicted RBP eCLIP11.89□□□□□ -0.51
USP54-208ENST00000461520 TRIM47Q96LD4 638 aa11.89□□□□□ -0.51
USP54-208ENST00000461520 SENP2Q9HC62 589 aa11.89□□□□□ -0.51
USP54-208ENST00000461520 PTPRMP28827 1452 aa11.89□□□□□ -0.51
USP54-208ENST00000461520 RAPGEF3O95398 923 aa11.88□□□□□ -0.51
USP54-208ENST00000461520 NR3C2P08235 984 aa11.88□□□□□ -0.51
USP54-208ENST00000461520 TIMP2P16035 220 aa11.88□□□□□ -0.51
USP54-208ENST00000461520 KLF16Q9BXK1 252 aaPredicted RBP11.88□□□□□ -0.51
USP54-208ENST00000461520 BCORL1Q5H9F3 1711 aa11.87□□□□□ -0.51
USP54-208ENST00000461520 PDXDC2PQ6P474 469 aa11.87□□□□□ -0.51
USP54-208ENST00000461520 ARHGAP35Q9NRY4 1499 aa11.87□□□□□ -0.51
USP54-208ENST00000461520 FRMPD1Q5SYB0 1578 aa11.87□□□□□ -0.51
USP54-208ENST00000461520 MADDQ8WXG6 1647 aa11.86□□□□□ -0.51
USP54-208ENST00000461520 NR5A1Q13285 461 aa11.86□□□□□ -0.51
USP54-208ENST00000461520 ERFEQ4G0M1 354 aa11.86□□□□□ -0.51
USP54-208ENST00000461520 ARHGAP9Q9BRR9 750 aa11.86□□□□□ -0.51
USP54-208ENST00000461520 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.86□□□□□ -0.51
USP54-208ENST00000461520 VASH1Q7L8A9 365 aaPredicted RBP11.85□□□□□ -0.51
USP54-208ENST00000461520 TRMT44Q8IYL2 757 aaKnown RBP11.85□□□□□ -0.51
USP54-208ENST00000461520 ZFAND3Q9H8U3 227 aa11.85□□□□□ -0.51
USP54-208ENST00000461520 CDK13Q14004 1512 aaKnown RBP11.85□□□□□ -0.51
USP54-208ENST00000461520 AKNAQ7Z591 1439 aa11.85□□□□□ -0.51
USP54-208ENST00000461520 FANCAO15360 1455 aa11.84□□□□□ -0.51
USP54-208ENST00000461520 ZIC2O95409 532 aaPredicted RBP11.84□□□□□ -0.51
USP54-208ENST00000461520 FBXO41Q8TF61 875 aa11.84□□□□□ -0.51
USP54-208ENST00000461520 ITPKCQ96DU7 683 aa11.84□□□□□ -0.51
USP54-208ENST00000461520 CDK11AQ9UQ88 783 aaPredicted RBP11.84□□□□□ -0.51
USP54-208ENST00000461520 HECW1Q76N89 1606 aa11.84□□□□□ -0.51
USP54-208ENST00000461520 ARID4BQ4LE39 1312 aaPredicted RBP11.84□□□□□ -0.51
USP54-208ENST00000461520 CFAP74Q9C0B2 1584 aa11.84□□□□□ -0.51
USP54-208ENST00000461520 DENND4BO75064 1496 aaPredicted RBP11.83□□□□□ -0.52
USP54-208ENST00000461520 FSHRP23945 695 aa11.83□□□□□ -0.52
USP54-208ENST00000461520 TMEM259Q4ZIN3 620 aa11.83□□□□□ -0.52
USP54-208ENST00000461520 KIFC2Q96AC6 838 aa11.83□□□□□ -0.52
USP54-208ENST00000461520 OCSTAMPQ9BR26 566 aa11.83□□□□□ -0.52
USP54-208ENST00000461520 RIMS1Q86UR5 1692 aaKnown RBP11.83□□□□□ -0.52
USP54-208ENST00000461520 PRKCSHP14314 528 aaPredicted RBP11.82□□□□□ -0.52
USP54-208ENST00000461520 MAP4K5Q9Y4K4 846 aa11.82□□□□□ -0.52
USP54-208ENST00000461520 PCF11O94913 1555 aaKnown RBP11.82□□□□□ -0.52
USP54-208ENST00000461520 TTC37Q6PGP7 1564 aa11.82□□□□□ -0.52
USP54-208ENST00000461520 ARHGEF40Q8TER5 1519 aa11.81□□□□□ -0.52
USP54-208ENST00000461520 RICTORQ6R327 1708 aa11.81□□□□□ -0.52
USP54-208ENST00000461520 PLCH2O75038 1416 aa11.81□□□□□ -0.52
USP54-208ENST00000461520 ZBTB33Q86T24 672 aa11.81□□□□□ -0.52
USP54-208ENST00000461520 ZFP42Q96MM3 310 aa11.81□□□□□ -0.52
USP54-208ENST00000461520 ZC3H4Q9UPT8 1303 aaKnown RBP11.81□□□□□ -0.52
USP54-208ENST00000461520 PTK2Q05397 1052 aa11.8□□□□□ -0.52
USP54-208ENST00000461520 MRPL14Q6P1L8 145 aaKnown RBP11.8□□□□□ -0.52
USP54-208ENST00000461520 TRIM34Q9BYJ4 488 aa11.8□□□□□ -0.52
USP54-208ENST00000461520 LMTK3Q96Q04 1460 aa11.8□□□□□ -0.52
USP54-208ENST00000461520 TREML4Q6UXN2 200 aa11.79□□□□□ -0.52
USP54-208ENST00000461520 PURBQ96QR8 312 aaKnown RBP11.79□□□□□ -0.52
USP54-208ENST00000461520 ADAM32Q8TC27 787 aa11.78□□□□□ -0.52
USP54-208ENST00000461520 TROQ12816 1431 aaPredicted RBP11.77□□□□□ -0.52
USP54-208ENST00000461520 MAGI2Q86UL8 1455 aa11.77□□□□□ -0.52
USP54-208ENST00000461520 ZMYM4Q5VZL5 1548 aa11.77□□□□□ -0.52
USP54-208ENST00000461520 EFCAB2Q5VUJ9 269 aa11.77□□□□□ -0.53
USP54-208ENST00000461520 SLC10A4Q96EP9 437 aa11.77□□□□□ -0.53
USP54-208ENST00000461520 SIGLEC1Q9BZZ2 1709 aa11.77□□□□□ -0.53
USP54-208ENST00000461520 CLIP1P30622 1438 aa11.77□□□□□ -0.53
USP54-208ENST00000461520 SCAPERQ9BY12 1400 aa11.77□□□□□ -0.53
USP54-208ENST00000461520 CCDC116Q8IYX3 515 aa11.76□□□□□ -0.53
USP54-208ENST00000461520 PNMA1Q8ND90 353 aa11.76□□□□□ -0.53
USP54-208ENST00000461520 KCTD15Q96SI1 283 aaPredicted RBP11.76□□□□□ -0.53
USP54-208ENST00000461520 GPSM3Q9Y4H4 160 aa11.76□□□□□ -0.53
USP54-208ENST00000461520 KIF14Q15058 1648 aa11.75□□□□□ -0.53
USP54-208ENST00000461520 SCARF1Q14162 830 aa11.75□□□□□ -0.53
USP54-208ENST00000461520 LCE2AQ5TA79 106 aaPredicted RBP11.75□□□□□ -0.53
USP54-208ENST00000461520 POGZQ7Z3K3 1410 aa11.75□□□□□ -0.53
USP54-208ENST00000461520 CASKIN1Q8WXD9 1431 aa11.75□□□□□ -0.53
USP54-208ENST00000461520 ZFYVE16Q7Z3T8 1539 aa11.75□□□□□ -0.53
USP54-208ENST00000461520 WFS1O76024 890 aa11.74□□□□□ -0.53
USP54-208ENST00000461520 HSPA2P54652 639 aa11.74□□□□□ -0.53
USP54-208ENST00000461520 C6orf118Q5T5N4 469 aa11.74□□□□□ -0.53
USP54-208ENST00000461520 GJD4Q96KN9 370 aaPredicted RBP11.74□□□□□ -0.53
USP54-208ENST00000461520 CCDC18Q5T9S5 1454 aa11.74□□□□□ -0.53
USP54-208ENST00000461520 MYO5CQ9NQX4 1742 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms