RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 BCL11BQ9C0K0 894 aaPredicted RBP13.65□□□□□ -0.22
USP39-210ENST00000459775 NWD2Q9ULI1 1742 aa13.65□□□□□ -0.22
USP39-210ENST00000459775 CRYBG1Q9Y4K1 1723 aa13.65□□□□□ -0.22
USP39-210ENST00000459775 PRKAR2BP31323 418 aa13.64□□□□□ -0.23
USP39-210ENST00000459775 ANKRD24Q8TF21 1146 aa13.64□□□□□ -0.23
USP39-210ENST00000459775 RSPH6AQ9H0K4 717 aa13.64□□□□□ -0.23
USP39-210ENST00000459775 PLEKHF1Q96S99 279 aa13.64□□□□□ -0.23
USP39-210ENST00000459775 HSP90B1P14625 803 aaKnown RBP13.63□□□□□ -0.23
USP39-210ENST00000459775 VSIG10Q8N0Z9 540 aa13.63□□□□□ -0.23
USP39-210ENST00000459775 TCP11L2Q8N4U5 519 aa13.63□□□□□ -0.23
USP39-210ENST00000459775 RTL1A6NKG5 1358 aa13.61□□□□□ -0.23
USP39-210ENST00000459775 RUNDC1Q96C34 613 aa13.61□□□□□ -0.23
USP39-210ENST00000459775 STRN4Q9NRL3 753 aa13.61□□□□□ -0.23
USP39-210ENST00000459775 CPDO75976 1380 aa13.61□□□□□ -0.23
USP39-210ENST00000459775 ERBB3P21860 1342 aa13.6□□□□□ -0.23
USP39-210ENST00000459775 FCHSD2O94868 740 aa13.6□□□□□ -0.23
USP39-210ENST00000459775 CSB-PGBD3P0DP91 1061 aa13.6□□□□□ -0.23
USP39-210ENST00000459775 NLRP2Q9NX02 1062 aa13.6□□□□□ -0.23
USP39-210ENST00000459775 ABCA3Q99758 1704 aa13.6□□□□□ -0.23
USP39-210ENST00000459775 CAMTA1Q9Y6Y1 1673 aa13.6□□□□□ -0.23
USP39-210ENST00000459775 RGPD5Q99666 1765 aa13.6□□□□□ -0.23
USP39-210ENST00000459775 KIF24Q5T7B8 1368 aa13.6□□□□□ -0.23
USP39-210ENST00000459775 IGSF1Q8N6C5 1336 aa13.6□□□□□ -0.23
USP39-210ENST00000459775 VPS72Q15906 364 aa13.6□□□□□ -0.23
USP39-210ENST00000459775 BTG4Q9NY30 223 aa13.6□□□□□ -0.23
USP39-210ENST00000459775 BRWD3Q6RI45 1802 aa13.59□□□□□ -0.23
USP39-210ENST00000459775 BAG6P46379 1132 aa13.59□□□□□ -0.23
USP39-210ENST00000459775 CDCA7LQ96GN5 454 aa13.59□□□□□ -0.23
USP39-210ENST00000459775 PLCH1Q4KWH8 1693 aa13.59□□□□□ -0.23
USP39-210ENST00000459775 COL18A1P39060 1754 aa13.58□□□□□ -0.23
USP39-210ENST00000459775 LARP1Q6PKG0 1096 aaKnown RBP13.58□□□□□ -0.23
USP39-210ENST00000459775 USP35Q9P2H5 1018 aa13.58□□□□□ -0.23
USP39-210ENST00000459775 RGPD1P0DJD0 1748 aa13.58□□□□□ -0.24
USP39-210ENST00000459775 ONECUT3O60422 494 aaPredicted RBP13.58□□□□□ -0.24
USP39-210ENST00000459775 MAPK8IP3Q9UPT6 1336 aa13.57□□□□□ -0.24
USP39-210ENST00000459775 HMGB1P09429 215 aaKnown RBP13.57□□□□□ -0.24
USP39-210ENST00000459775 RGPD2P0DJD1 1756 aa13.57□□□□□ -0.24
USP39-210ENST00000459775 ZBED9Q6R2W3 1325 aa13.57□□□□□ -0.24
USP39-210ENST00000459775 TMPOP42166 694 aaKnown RBP13.57□□□□□ -0.24
USP39-210ENST00000459775 SEPT12Q8IYM1 358 aa13.57□□□□□ -0.24
USP39-210ENST00000459775 EVA1CP58658 441 aa13.56□□□□□ -0.24
USP39-210ENST00000459775 KRT27Q7Z3Y8 459 aa13.56□□□□□ -0.24
USP39-210ENST00000459775 THUMPD2Q9BTF0 503 aaKnown RBP13.56□□□□□ -0.24
USP39-210ENST00000459775 SPINK5Q9NQ38 1064 aaPredicted RBP13.56□□□□□ -0.24
USP39-210ENST00000459775 TOM1L2Q6ZVM7 507 aa13.55□□□□□ -0.24
USP39-210ENST00000459775 DEFB132Q7Z7B7 95 aa13.55□□□□□ -0.24
USP39-210ENST00000459775 RIPK4P57078 832 aa13.55□□□□□ -0.24
USP39-210ENST00000459775 DCTN1Q14203 1278 aa13.55□□□□□ -0.24
USP39-210ENST00000459775 MTHFSDQ2M296 383 aaKnown RBP13.55□□□□□ -0.24
USP39-210ENST00000459775 KDRP35968 1356 aa13.55□□□□□ -0.24
USP39-210ENST00000459775 COL5A2P05997 1499 aaPredicted RBP13.55□□□□□ -0.24
USP39-210ENST00000459775 DISP2A7MBM2 1401 aa13.54□□□□□ -0.24
USP39-210ENST00000459775 TRIM35Q9UPQ4 493 aa13.54□□□□□ -0.24
USP39-210ENST00000459775 WWC1Q8IX03 1113 aa13.54□□□□□ -0.24
USP39-210ENST00000459775 LMO7Q8WWI1 1683 aa13.53□□□□□ -0.24
USP39-210ENST00000459775 WDR17Q8IZU2 1322 aa13.53□□□□□ -0.24
USP39-210ENST00000459775 NFE2L2Q16236 605 aa13.52□□□□□ -0.24
USP39-210ENST00000459775 ZNF521Q96K83 1311 aa13.52□□□□□ -0.24
USP39-210ENST00000459775 NRAPQ86VF7 1730 aa13.52□□□□□ -0.24
USP39-210ENST00000459775 NEFMP07197 916 aa13.51□□□□□ -0.25
USP39-210ENST00000459775 MCM10Q7L590 875 aa13.51□□□□□ -0.25
USP39-210ENST00000459775 PNNQ9H307 717 aaKnown RBP13.51□□□□□ -0.25
USP39-210ENST00000459775 COL14A1Q05707 1796 aaKnown RBP13.5□□□□□ -0.25
USP39-210ENST00000459775 CCDC9Q9Y3X0 531 aaKnown RBP13.5□□□□□ -0.25
USP39-210ENST00000459775 MEGF6O75095 1541 aa13.5□□□□□ -0.25
USP39-210ENST00000459775 RAPGEF4Q8WZA2 1011 aa13.48□□□□□ -0.25
USP39-210ENST00000459775 CARD10Q9BWT7 1032 aa13.48□□□□□ -0.25
USP39-210ENST00000459775 NCAPD2Q15021 1401 aa13.47□□□□□ -0.25
USP39-210ENST00000459775 TNS1Q9HBL0 1735 aaKnown RBP13.47□□□□□ -0.25
USP39-210ENST00000459775 GOLGA2Q08379 1002 aa13.47□□□□□ -0.25
USP39-210ENST00000459775 ZNF530Q6P9A1 599 aaPredicted RBP13.47□□□□□ -0.25
USP39-210ENST00000459775 BCCIPQ9P287 314 aaKnown RBP eCLIP13.47□□□□□ -0.25
USP39-210ENST00000459775 LAS1LQ9Y4W2 734 aaKnown RBP13.47□□□□□ -0.25
USP39-210ENST00000459775 FAM208AQ9UK61 1670 aaKnown RBP13.47□□□□□ -0.25
USP39-210ENST00000459775 THSD7AQ9UPZ6 1657 aa13.47□□□□□ -0.25
USP39-210ENST00000459775 ABCC6O95255 1503 aa13.46□□□□□ -0.25
USP39-210ENST00000459775 TSR2Q969E8 191 aaKnown RBP13.46□□□□□ -0.25
USP39-210ENST00000459775 LGR6Q9HBX8 967 aa13.46□□□□□ -0.25
USP39-210ENST00000459775 CRB1P82279 1406 aa13.46□□□□□ -0.25
USP39-210ENST00000459775 PSDA5PKW4 1024 aaPredicted RBP13.46□□□□□ -0.26
USP39-210ENST00000459775 TATP17735 454 aaPredicted RBP13.46□□□□□ -0.26
USP39-210ENST00000459775 MPRIPQ6WCQ1 1025 aa13.46□□□□□ -0.26
USP39-210ENST00000459775 MIS18AQ9NYP9 233 aa13.46□□□□□ -0.26
USP39-210ENST00000459775 A0A0G2JS52 829 aa13.45□□□□□ -0.26
USP39-210ENST00000459775 SLFN5Q08AF3 891 aa13.45□□□□□ -0.26
USP39-210ENST00000459775 CCDC27Q2M243 656 aa13.45□□□□□ -0.26
USP39-210ENST00000459775 IL17REQ8NFR9 667 aa13.45□□□□□ -0.26
USP39-210ENST00000459775 PLEKHO1Q53GL0 409 aaPredicted RBP13.45□□□□□ -0.26
USP39-210ENST00000459775 CYP27B1O15528 508 aa13.44□□□□□ -0.26
USP39-210ENST00000459775 IL2RBP14784 551 aa13.44□□□□□ -0.26
USP39-210ENST00000459775 DUSP27Q5VZP5 1158 aa13.44□□□□□ -0.26
USP39-210ENST00000459775 GAS2L2Q8NHY3 880 aa13.44□□□□□ -0.26
USP39-210ENST00000459775 GNAT3A8MTJ3 354 aa13.43□□□□□ -0.26
USP39-210ENST00000459775 DDX54Q8TDD1 881 aaKnown RBP13.43□□□□□ -0.26
USP39-210ENST00000459775 SPATA31A1Q5TZJ5 1347 aa13.43□□□□□ -0.26
USP39-210ENST00000459775 IGSF3O75054 1194 aa13.43□□□□□ -0.26
USP39-210ENST00000459775 EP400Q96L91 3159 aa13.43□□□□□ -0.26
USP39-210ENST00000459775 WDR63Q8IWG1 891 aa13.42□□□□□ -0.26
USP39-210ENST00000459775 SPATA31A5Q5VU36 1347 aa13.42□□□□□ -0.26
USP39-210ENST00000459775 SPATA31A7Q8IWB4 1347 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms