RNA–Protein interactions for RNA: ENST00000459670.2

NEDD9-205, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 614 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-205ENST00000459670 GOLGA2Q08379 1002 aa13.75□□□□□ -0.21
NEDD9-205ENST00000459670 MTHFSDQ2M296 383 aaKnown RBP13.75□□□□□ -0.21
NEDD9-205ENST00000459670 LTV1Q96GA3 475 aaPredicted RBP13.75□□□□□ -0.21
NEDD9-205ENST00000459670 SALL2Q9Y467 1007 aaPredicted RBP13.74□□□□□ -0.21
NEDD9-205ENST00000459670 BCL9LQ86UU0 1499 aa13.74□□□□□ -0.21
NEDD9-205ENST00000459670 KDM6AO15550 1401 aaPredicted RBP13.73□□□□□ -0.21
NEDD9-205ENST00000459670 MAP3K5Q99683 1374 aa13.73□□□□□ -0.21
NEDD9-205ENST00000459670 E9PSI1 815 aa13.73□□□□□ -0.21
NEDD9-205ENST00000459670 RIPK4P57078 832 aa13.73□□□□□ -0.21
NEDD9-205ENST00000459670 ITGB4P16144 1822 aa13.73□□□□□ -0.21
NEDD9-205ENST00000459670 SPATA31A6Q5VVP1 1343 aa13.72□□□□□ -0.21
NEDD9-205ENST00000459670 PLEKHG5O94827 1062 aa13.72□□□□□ -0.21
NEDD9-205ENST00000459670 CARD10Q9BWT7 1032 aa13.72□□□□□ -0.21
NEDD9-205ENST00000459670 ZBTB7CA1YPR0 619 aa13.71□□□□□ -0.21
NEDD9-205ENST00000459670 HSPA1LP34931 641 aa13.71□□□□□ -0.21
NEDD9-205ENST00000459670 GAS2L2Q8NHY3 880 aa13.71□□□□□ -0.21
NEDD9-205ENST00000459670 CACNA1FO60840 1977 aa13.71□□□□□ -0.22
NEDD9-205ENST00000459670 N4BP2Q86UW6 1770 aaPredicted RBP13.71□□□□□ -0.22
NEDD9-205ENST00000459670 FANCIQ9NVI1 1328 aa13.7□□□□□ -0.22
NEDD9-205ENST00000459670 C5P01031 1676 aa13.7□□□□□ -0.22
NEDD9-205ENST00000459670 HTATSF1O43719 755 aaKnown RBP13.7□□□□□ -0.22
NEDD9-205ENST00000459670 NEUROD2Q15784 382 aa13.7□□□□□ -0.22
NEDD9-205ENST00000459670 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.7□□□□□ -0.22
NEDD9-205ENST00000459670 DOT1LQ8TEK3 1739 aa13.7□□□□□ -0.22
NEDD9-205ENST00000459670 LAMB4A4D0S4 1761 aa13.69□□□□□ -0.22
NEDD9-205ENST00000459670 LMOD3Q0VAK6 560 aa13.69□□□□□ -0.22
NEDD9-205ENST00000459670 LARP1Q6PKG0 1096 aaKnown RBP13.69□□□□□ -0.22
NEDD9-205ENST00000459670 TNS2Q63HR2 1409 aa13.69□□□□□ -0.22
NEDD9-205ENST00000459670 CICQ96RK0 1608 aaPredicted RBP13.68□□□□□ -0.22
NEDD9-205ENST00000459670 THUMPD2Q9BTF0 503 aaKnown RBP13.68□□□□□ -0.22
NEDD9-205ENST00000459670 IFT57Q9NWB7 429 aa13.68□□□□□ -0.22
NEDD9-205ENST00000459670 BTG4Q9NY30 223 aa13.68□□□□□ -0.22
NEDD9-205ENST00000459670 AMOTQ4VCS5 1084 aa13.67□□□□□ -0.22
NEDD9-205ENST00000459670 FNBP4Q8N3X1 1017 aaPredicted RBP13.67□□□□□ -0.22
NEDD9-205ENST00000459670 IL17REQ8NFR9 667 aa13.67□□□□□ -0.22
NEDD9-205ENST00000459670 DCTN1Q14203 1278 aa13.66□□□□□ -0.22
NEDD9-205ENST00000459670 NLRP2Q9NX02 1062 aa13.66□□□□□ -0.22
NEDD9-205ENST00000459670 GNAT3A8MTJ3 354 aa13.65□□□□□ -0.22
NEDD9-205ENST00000459670 CHL1O00533 1208 aa13.65□□□□□ -0.22
NEDD9-205ENST00000459670 CYP27B1O15528 508 aa13.65□□□□□ -0.22
NEDD9-205ENST00000459670 NEFMP07197 916 aa13.65□□□□□ -0.22
NEDD9-205ENST00000459670 HAP1P54257 671 aaPredicted RBP13.65□□□□□ -0.22
NEDD9-205ENST00000459670 AKAP4Q5JQC9 854 aa13.65□□□□□ -0.22
NEDD9-205ENST00000459670 CFAP44Q96MT7 982 aa13.65□□□□□ -0.22
NEDD9-205ENST00000459670 SPATA31A1Q5TZJ5 1347 aa13.64□□□□□ -0.23
NEDD9-205ENST00000459670 ATRNO75882 1429 aa13.64□□□□□ -0.23
NEDD9-205ENST00000459670 PLEKHO1Q53GL0 409 aaPredicted RBP13.64□□□□□ -0.23
NEDD9-205ENST00000459670 MCM10Q7L590 875 aa13.64□□□□□ -0.23
NEDD9-205ENST00000459670 SBF2Q86WG5 1849 aa13.64□□□□□ -0.23
NEDD9-205ENST00000459670 SPATA31A5Q5VU36 1347 aa13.64□□□□□ -0.23
NEDD9-205ENST00000459670 SPATA31A7Q8IWB4 1347 aa13.64□□□□□ -0.23
NEDD9-205ENST00000459670 HEG1Q9ULI3 1381 aa13.63□□□□□ -0.23
NEDD9-205ENST00000459670 PHKG2P15735 406 aa13.63□□□□□ -0.23
NEDD9-205ENST00000459670 CALD1Q05682 793 aaKnown RBP13.63□□□□□ -0.23
NEDD9-205ENST00000459670 ZNF530Q6P9A1 599 aaPredicted RBP13.63□□□□□ -0.23
NEDD9-205ENST00000459670 TOM1L2Q6ZVM7 507 aa13.63□□□□□ -0.23
NEDD9-205ENST00000459670 TSR2Q969E8 191 aaKnown RBP13.63□□□□□ -0.23
NEDD9-205ENST00000459670 MYH16Q9H6N6 1097 aa13.63□□□□□ -0.23
NEDD9-205ENST00000459670 MBIPQ9NS73 344 aa13.63□□□□□ -0.23
NEDD9-205ENST00000459670 ADAMTS2O95450 1211 aa13.62□□□□□ -0.23
NEDD9-205ENST00000459670 CT47B1P0C2W7 299 aaPredicted RBP13.62□□□□□ -0.23
NEDD9-205ENST00000459670 CSB-PGBD3P0DP91 1061 aa13.62□□□□□ -0.23
NEDD9-205ENST00000459670 TATP17735 454 aaPredicted RBP13.62□□□□□ -0.23
NEDD9-205ENST00000459670 GNAI1P63096 354 aa13.62□□□□□ -0.23
NEDD9-205ENST00000459670 NKX1-1Q15270 411 aaPredicted RBP13.62□□□□□ -0.23
NEDD9-205ENST00000459670 RAPGEF4Q8WZA2 1011 aa13.62□□□□□ -0.23
NEDD9-205ENST00000459670 BABAM1Q9NWV8 329 aa13.62□□□□□ -0.23
NEDD9-205ENST00000459670 RCAN3Q9UKA8 241 aa13.62□□□□□ -0.23
NEDD9-205ENST00000459670 KCPQ6ZWJ8 1503 aa13.62□□□□□ -0.23
NEDD9-205ENST00000459670 BRWD3Q6RI45 1802 aa13.62□□□□□ -0.23
NEDD9-205ENST00000459670 RNMTO43148 476 aaKnown RBP13.61□□□□□ -0.23
NEDD9-205ENST00000459670 IL2RBP14784 551 aa13.61□□□□□ -0.23
NEDD9-205ENST00000459670 STRN4Q9NRL3 753 aa13.61□□□□□ -0.23
NEDD9-205ENST00000459670 ZNF831Q5JPB2 1677 aa13.6□□□□□ -0.23
NEDD9-205ENST00000459670 NHSQ6T4R5 1651 aa13.6□□□□□ -0.23
NEDD9-205ENST00000459670 VPS72Q15906 364 aa13.6□□□□□ -0.23
NEDD9-205ENST00000459670 UNC5CLQ8IV45 518 aa13.6□□□□□ -0.23
NEDD9-205ENST00000459670 LGR6Q9HBX8 967 aa13.6□□□□□ -0.23
NEDD9-205ENST00000459670 THRAP3Q9Y2W1 955 aaKnown RBP13.6□□□□□ -0.23
NEDD9-205ENST00000459670 SUPT16HQ9Y5B9 1047 aaKnown RBP13.6□□□□□ -0.23
NEDD9-205ENST00000459670 PCDH11XQ9BZA7 1347 aa13.6□□□□□ -0.23
NEDD9-205ENST00000459670 PCDH11YQ9BZA8 1340 aa13.6□□□□□ -0.23
NEDD9-205ENST00000459670 TJP1Q07157 1748 aa13.59□□□□□ -0.23
NEDD9-205ENST00000459670 NUTM2BA6NNL0 878 aaPredicted RBP13.59□□□□□ -0.23
NEDD9-205ENST00000459670 NUTM2EB1AL46 878 aaPredicted RBP13.59□□□□□ -0.23
NEDD9-205ENST00000459670 RRP1P56182 461 aaKnown RBP13.59□□□□□ -0.23
NEDD9-205ENST00000459670 EXOSC9Q06265 439 aaKnown RBP13.59□□□□□ -0.23
NEDD9-205ENST00000459670 BARGINQ6ZT62 677 aa13.59□□□□□ -0.23
NEDD9-205ENST00000459670 NUTM2AQ8IVF1 878 aaPredicted RBP13.59□□□□□ -0.23
NEDD9-205ENST00000459670 RARSP54136 660 aaKnown RBP13.58□□□□□ -0.24
NEDD9-205ENST00000459670 BRPF1P55201 1214 aaPredicted RBP13.58□□□□□ -0.24
NEDD9-205ENST00000459670 IFNL2Q8IZJ0 200 aa13.58□□□□□ -0.24
NEDD9-205ENST00000459670 SPG7Q9UQ90 795 aa13.58□□□□□ -0.24
NEDD9-205ENST00000459670 RREB1Q92766 1687 aa13.58□□□□□ -0.24
NEDD9-205ENST00000459670 RGS12O14924 1447 aa13.57□□□□□ -0.24
NEDD9-205ENST00000459670 TSPYL6Q8N831 410 aa13.57□□□□□ -0.24
NEDD9-205ENST00000459670 ZCRB1Q8TBF4 217 aaKnown RBP13.57□□□□□ -0.24
NEDD9-205ENST00000459670 VAMP4O75379 141 aa13.56□□□□□ -0.24
NEDD9-205ENST00000459670 MPRIPQ6WCQ1 1025 aa13.56□□□□□ -0.24
NEDD9-205ENST00000459670 C8orf58Q8NAV2 365 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms