RNA–Protein interactions for RNA: ENST00000458530.1

VPS50-207, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 667 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-207ENST00000458530 KCNQ2O43526 872 aa11.87□□□□□ -0.51
VPS50-207ENST00000458530 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.87□□□□□ -0.51
VPS50-207ENST00000458530 SPON1Q9HCB6 807 aa11.87□□□□□ -0.51
VPS50-207ENST00000458530 AATKQ6ZMQ8 1374 aa11.87□□□□□ -0.51
VPS50-207ENST00000458530 SSH2Q76I76 1423 aa11.86□□□□□ -0.51
VPS50-207ENST00000458530 PHRF1Q9P1Y6 1649 aaKnown RBP11.86□□□□□ -0.51
VPS50-207ENST00000458530 TNNT2P45379 298 aaPredicted RBP11.86□□□□□ -0.51
VPS50-207ENST00000458530 NGEFQ8N5V2 710 aa11.86□□□□□ -0.51
VPS50-207ENST00000458530 NUDCQ9Y266 331 aa11.86□□□□□ -0.51
VPS50-207ENST00000458530 PIK3C2AO00443 1686 aa11.86□□□□□ -0.51
VPS50-207ENST00000458530 RGPD3A6NKT7 1758 aaPredicted RBP11.86□□□□□ -0.51
VPS50-207ENST00000458530 RGPD4Q7Z3J3 1758 aa11.86□□□□□ -0.51
VPS50-207ENST00000458530 SMG6Q86US8 1419 aaKnown RBP11.86□□□□□ -0.51
VPS50-207ENST00000458530 TTC21BQ7Z4L5 1316 aa11.86□□□□□ -0.51
VPS50-207ENST00000458530 CASZ1Q86V15 1759 aa11.85□□□□□ -0.51
VPS50-207ENST00000458530 LMO7Q8WWI1 1683 aa11.85□□□□□ -0.51
VPS50-207ENST00000458530 MTHFSP49914 203 aa11.85□□□□□ -0.51
VPS50-207ENST00000458530 PEAK1Q9H792 1746 aa11.85□□□□□ -0.51
VPS50-207ENST00000458530 OVOS2A0A0J9YW53 1432 aa11.85□□□□□ -0.51
VPS50-207ENST00000458530 OVOS2Q6IE36 1432 aa11.85□□□□□ -0.51
VPS50-207ENST00000458530 CAMTA1Q9Y6Y1 1673 aa11.84□□□□□ -0.51
VPS50-207ENST00000458530 UTRNP46939 3433 aa11.84□□□□□ -0.51
VPS50-207ENST00000458530 CPDO75976 1380 aa11.84□□□□□ -0.51
VPS50-207ENST00000458530 NBPF14Q5TI25 921 aa11.84□□□□□ -0.51
VPS50-207ENST00000458530 PLCD3Q8N3E9 789 aa11.84□□□□□ -0.51
VPS50-207ENST00000458530 PDE3BQ13370 1112 aa11.83□□□□□ -0.52
VPS50-207ENST00000458530 CHRNA2Q15822 529 aa11.83□□□□□ -0.52
VPS50-207ENST00000458530 NME9Q86XW9 330 aa11.83□□□□□ -0.52
VPS50-207ENST00000458530 ZNF579Q8NAF0 562 aaKnown RBP11.83□□□□□ -0.52
VPS50-207ENST00000458530 PHF12Q96QT6 1004 aa11.83□□□□□ -0.52
VPS50-207ENST00000458530 PNNQ9H307 717 aaKnown RBP11.83□□□□□ -0.52
VPS50-207ENST00000458530 PARP4Q9UKK3 1724 aaKnown RBP11.83□□□□□ -0.52
VPS50-207ENST00000458530 COL3A1P02461 1466 aaPredicted RBP11.83□□□□□ -0.52
VPS50-207ENST00000458530 USP31Q70CQ4 1352 aa11.82□□□□□ -0.52
VPS50-207ENST00000458530 ZNF784Q8NCA9 323 aaPredicted RBP11.82□□□□□ -0.52
VPS50-207ENST00000458530 USP19O94966 1318 aa11.82□□□□□ -0.52
VPS50-207ENST00000458530 PLSCR1O15162 318 aa11.81□□□□□ -0.52
VPS50-207ENST00000458530 TCP11L2Q8N4U5 519 aa11.81□□□□□ -0.52
VPS50-207ENST00000458530 ANO8Q9HCE9 1232 aaPredicted RBP11.81□□□□□ -0.52
VPS50-207ENST00000458530 ADAMTS8Q9UP79 889 aa11.81□□□□□ -0.52
VPS50-207ENST00000458530 THRAP3Q9Y2W1 955 aaKnown RBP11.81□□□□□ -0.52
VPS50-207ENST00000458530 LTN1O94822 1766 aa11.8□□□□□ -0.52
VPS50-207ENST00000458530 BCL9O00512 1426 aa11.8□□□□□ -0.52
VPS50-207ENST00000458530 PTGER2P43116 358 aa11.8□□□□□ -0.52
VPS50-207ENST00000458530 LARP1Q6PKG0 1096 aaKnown RBP11.8□□□□□ -0.52
VPS50-207ENST00000458530 TSPYL2Q9H2G4 693 aaPredicted RBP11.8□□□□□ -0.52
VPS50-207ENST00000458530 STRN4Q9NRL3 753 aa11.8□□□□□ -0.52
VPS50-207ENST00000458530 KIF24Q5T7B8 1368 aa11.79□□□□□ -0.52
VPS50-207ENST00000458530 DIAPH1O60610 1272 aaKnown RBP11.79□□□□□ -0.52
VPS50-207ENST00000458530 PAK3O75914 559 aaPredicted RBP11.79□□□□□ -0.52
VPS50-207ENST00000458530 PPP1R1BQ9UD71 204 aaPredicted RBP11.79□□□□□ -0.52
VPS50-207ENST00000458530 COL5A2P05997 1499 aaPredicted RBP11.78□□□□□ -0.52
VPS50-207ENST00000458530 NEFLP07196 543 aa11.78□□□□□ -0.52
VPS50-207ENST00000458530 NEFMP07197 916 aa11.78□□□□□ -0.52
VPS50-207ENST00000458530 ZC3H6P61129 1189 aaKnown RBP11.78□□□□□ -0.52
VPS50-207ENST00000458530 OVOS2A0A0G2JMS6 1433 aa11.77□□□□□ -0.52
VPS50-207ENST00000458530 SBF2Q86WG5 1849 aa11.77□□□□□ -0.52
VPS50-207ENST00000458530 U2AF1L5P0DN76 240 aaPredicted RBP11.77□□□□□ -0.53
VPS50-207ENST00000458530 U2AF1Q01081 240 aaKnown RBP eCLIP11.77□□□□□ -0.53
VPS50-207ENST00000458530 RUNDC1Q96C34 613 aa11.77□□□□□ -0.53
VPS50-207ENST00000458530 SGIP1Q9BQI5 828 aa11.77□□□□□ -0.53
VPS50-207ENST00000458530 PDGFDQ9GZP0 370 aaPredicted RBP11.77□□□□□ -0.53
VPS50-207ENST00000458530 USP35Q9P2H5 1018 aa11.77□□□□□ -0.53
VPS50-207ENST00000458530 POLKQ9UBT6 870 aa11.77□□□□□ -0.53
VPS50-207ENST00000458530 LRRC37A3O60309 1634 aa11.76□□□□□ -0.53
VPS50-207ENST00000458530 GALR2O43603 387 aaPredicted RBP11.76□□□□□ -0.53
VPS50-207ENST00000458530 MAPK8IP3Q9UPT6 1336 aa11.76□□□□□ -0.53
VPS50-207ENST00000458530 RTL1A6NKG5 1358 aa11.76□□□□□ -0.53
VPS50-207ENST00000458530 U2SURPO15042 1029 aaKnown RBP11.75□□□□□ -0.53
VPS50-207ENST00000458530 PPM1GO15355 546 aaPredicted RBP11.75□□□□□ -0.53
VPS50-207ENST00000458530 POTEIP0CG38 1075 aa11.75□□□□□ -0.53
VPS50-207ENST00000458530 NLRP6P59044 892 aa11.75□□□□□ -0.53
VPS50-207ENST00000458530 ABTB2Q8N961 1025 aa11.75□□□□□ -0.53
VPS50-207ENST00000458530 BCL11BQ9C0K0 894 aaPredicted RBP11.75□□□□□ -0.53
VPS50-207ENST00000458530 FLT4P35916 1363 aa11.75□□□□□ -0.53
VPS50-207ENST00000458530 CRB1P82279 1406 aa11.75□□□□□ -0.53
VPS50-207ENST00000458530 EVA1CP58658 441 aa11.74□□□□□ -0.53
VPS50-207ENST00000458530 C1QTNF8P60827 252 aa11.74□□□□□ -0.53
VPS50-207ENST00000458530 IFFO2Q5TF58 517 aa11.74□□□□□ -0.53
VPS50-207ENST00000458530 PTF1AQ7RTS3 328 aa11.74□□□□□ -0.53
VPS50-207ENST00000458530 RASEFQ8IZ41 740 aa11.74□□□□□ -0.53
VPS50-207ENST00000458530 KCNH5Q8NCM2 988 aa11.74□□□□□ -0.53
VPS50-207ENST00000458530 GTF3C3Q9Y5Q9 886 aa11.74□□□□□ -0.53
VPS50-207ENST00000458530 MAP3K5Q99683 1374 aa11.74□□□□□ -0.53
VPS50-207ENST00000458530 SLIT3O75094 1523 aa11.74□□□□□ -0.53
VPS50-207ENST00000458530 NFAT5O94916 1531 aa11.73□□□□□ -0.53
VPS50-207ENST00000458530 GCP02774 474 aa11.73□□□□□ -0.53
VPS50-207ENST00000458530 NUTM2GQ5VZR2 741 aa11.73□□□□□ -0.53
VPS50-207ENST00000458530 CCDC146Q8IYE0 955 aa11.73□□□□□ -0.53
VPS50-207ENST00000458530 SYT17Q9BSW7 474 aa11.73□□□□□ -0.53
VPS50-207ENST00000458530 EMILIN1Q9Y6C2 1016 aa11.73□□□□□ -0.53
VPS50-207ENST00000458530 FCHSD2O94868 740 aa11.72□□□□□ -0.53
VPS50-207ENST00000458530 ABCC6O95255 1503 aa11.71□□□□□ -0.53
VPS50-207ENST00000458530 CHD4Q14839 1912 aa11.71□□□□□ -0.53
VPS50-207ENST00000458530 APAF1O14727 1248 aa11.71□□□□□ -0.53
VPS50-207ENST00000458530 ZBTB7AO95365 584 aa11.71□□□□□ -0.53
VPS50-207ENST00000458530 AMPHP49418 695 aa11.71□□□□□ -0.53
VPS50-207ENST00000458530 GOLGA2Q08379 1002 aa11.71□□□□□ -0.53
VPS50-207ENST00000458530 RRS1Q15050 365 aaKnown RBP11.71□□□□□ -0.53
VPS50-207ENST00000458530 FBXO3Q9UK99 471 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms