RNA–Protein interactions for RNA: ENST00000457312.1

SF3B4-202, Transcript of splicing factor 3b subunit 4, humanhuman

TSL 5

Gene SF3B4, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-202ENST00000457312 C16orf71Q8IYS4 520 aaPredicted RBP23.99■■□□□ 1.43
SF3B4-202ENST00000457312 TOGARAM1Q9Y4F4 1720 aa23.98■■□□□ 1.43
SF3B4-202ENST00000457312 C10orf71Q711Q0 1435 aa23.97■■□□□ 1.43
SF3B4-202ENST00000457312 TNRC6CQ9HCJ0 1690 aaKnown RBP23.97■■□□□ 1.43
SF3B4-202ENST00000457312 CCNL1Q9UK58 526 aaPredicted RBP23.97■■□□□ 1.43
SF3B4-202ENST00000457312 KIF13BQ9NQT8 1826 aa23.96■■□□□ 1.43
SF3B4-202ENST00000457312 SOX12O15370 315 aa23.95■■□□□ 1.42
SF3B4-202ENST00000457312 FAM161AQ3B820 660 aa23.95■■□□□ 1.42
SF3B4-202ENST00000457312 ANKRD36BQ8N2N9 1353 aa23.94■■□□□ 1.42
SF3B4-202ENST00000457312 N4BP2Q86UW6 1770 aaPredicted RBP23.94■■□□□ 1.42
SF3B4-202ENST00000457312 ERBB3P21860 1342 aa23.94■■□□□ 1.42
SF3B4-202ENST00000457312 KCNH5Q8NCM2 988 aa23.93■■□□□ 1.42
SF3B4-202ENST00000457312 KCPQ6ZWJ8 1503 aa23.93■■□□□ 1.42
SF3B4-202ENST00000457312 LTN1O94822 1766 aa23.91■■□□□ 1.42
SF3B4-202ENST00000457312 SYTL4Q96C24 671 aaPredicted RBP23.91■■□□□ 1.42
SF3B4-202ENST00000457312 NLRP2Q9NX02 1062 aa23.91■■□□□ 1.42
SF3B4-202ENST00000457312 PXDNLA1KZ92 1463 aa23.91■■□□□ 1.42
SF3B4-202ENST00000457312 PLEKHG2Q9H7P9 1386 aa23.91■■□□□ 1.42
SF3B4-202ENST00000457312 KIAA1210Q9ULL0 1709 aa23.9■■□□□ 1.42
SF3B4-202ENST00000457312 BRCA1P38398 1863 aaKnown RBP23.9■■□□□ 1.42
SF3B4-202ENST00000457312 UBR3Q6ZT12 1888 aa23.9■■□□□ 1.42
SF3B4-202ENST00000457312 PPARGC1BQ86YN6 1023 aaKnown RBP23.9■■□□□ 1.42
SF3B4-202ENST00000457312 PRIM1P49642 420 aaKnown RBP23.89■■□□□ 1.41
SF3B4-202ENST00000457312 SRPK2P78362 688 aaKnown RBP23.88■■□□□ 1.41
SF3B4-202ENST00000457312 SMC1BQ8NDV3 1235 aa23.86■■□□□ 1.41
SF3B4-202ENST00000457312 FLAD1Q8NFF5 587 aa23.86■■□□□ 1.41
SF3B4-202ENST00000457312 DDX54Q8TDD1 881 aaKnown RBP23.86■■□□□ 1.41
SF3B4-202ENST00000457312 CABP2Q9NPB3 220 aa23.86■■□□□ 1.41
SF3B4-202ENST00000457312 KDM2AQ9Y2K7 1162 aa23.86■■□□□ 1.41
SF3B4-202ENST00000457312 C4BP0C0L5 1744 aa23.86■■□□□ 1.41
SF3B4-202ENST00000457312 ARFGEF1Q9Y6D6 1849 aa23.84■■□□□ 1.41
SF3B4-202ENST00000457312 CABP1Q9NZU7 370 aa23.84■■□□□ 1.41
SF3B4-202ENST00000457312 AMIGO3Q86WK7 504 aa23.82■■□□□ 1.4
SF3B4-202ENST00000457312 KDM2BQ8NHM5 1336 aa23.82■■□□□ 1.4
SF3B4-202ENST00000457312 USP47Q96K76 1375 aa23.81■■□□□ 1.4
SF3B4-202ENST00000457312 FAM208AQ9UK61 1670 aaKnown RBP23.81■■□□□ 1.4
SF3B4-202ENST00000457312 C9orf131Q5VYM1 1079 aa23.81■■□□□ 1.4
SF3B4-202ENST00000457312 ARHGAP27Q6ZUM4 889 aa23.81■■□□□ 1.4
SF3B4-202ENST00000457312 DCAF11Q8TEB1 546 aa23.81■■□□□ 1.4
SF3B4-202ENST00000457312 BCS1LQ9Y276 419 aa23.81■■□□□ 1.4
SF3B4-202ENST00000457312 TTC21BQ7Z4L5 1316 aa23.81■■□□□ 1.4
SF3B4-202ENST00000457312 RRAGCQ9HB90 399 aa23.79■■□□□ 1.4
SF3B4-202ENST00000457312 SBF1O95248 1867 aa23.78■■□□□ 1.4
SF3B4-202ENST00000457312 FOXN1O15353 648 aa23.77■■□□□ 1.4
SF3B4-202ENST00000457312 ANKRD24Q8TF21 1146 aa23.77■■□□□ 1.4
SF3B4-202ENST00000457312 PRDM10Q9NQV6 1147 aa23.77■■□□□ 1.4
SF3B4-202ENST00000457312 SMIM5Q71RC9 77 aa23.75■■□□□ 1.39
SF3B4-202ENST00000457312 TTC21AQ8NDW8 1320 aa23.75■■□□□ 1.39
SF3B4-202ENST00000457312 PHF14O94880 888 aa23.72■■□□□ 1.39
SF3B4-202ENST00000457312 NSD3Q9BZ95 1437 aa23.72■■□□□ 1.39
SF3B4-202ENST00000457312 MON2Q7Z3U7 1717 aa23.72■■□□□ 1.39
SF3B4-202ENST00000457312 PDE4DIPQ5VU43 2346 aa23.7■■□□□ 1.38
SF3B4-202ENST00000457312 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.7■■□□□ 1.38
SF3B4-202ENST00000457312 A0A0G2JLW4 131 aa23.7■■□□□ 1.38
SF3B4-202ENST00000457312 MLLT1Q03111 559 aaPredicted RBP23.7■■□□□ 1.38
SF3B4-202ENST00000457312 ABHD8Q96I13 439 aa23.7■■□□□ 1.38
SF3B4-202ENST00000457312 AK7Q96M32 723 aa23.7■■□□□ 1.38
SF3B4-202ENST00000457312 STAC3Q96MF2 364 aa23.7■■□□□ 1.38
SF3B4-202ENST00000457312 PALLDQ8WX93 1383 aa23.69■■□□□ 1.38
SF3B4-202ENST00000457312 TGFB2P61812 414 aa23.69■■□□□ 1.38
SF3B4-202ENST00000457312 RGPD2P0DJD1 1756 aa23.68■■□□□ 1.38
SF3B4-202ENST00000457312 CENPJQ9HC77 1338 aaPredicted RBP23.68■■□□□ 1.38
SF3B4-202ENST00000457312 FCHSD2O94868 740 aa23.68■■□□□ 1.38
SF3B4-202ENST00000457312 RNF181Q9P0P0 153 aa23.68■■□□□ 1.38
SF3B4-202ENST00000457312 MEGF6O75095 1541 aa23.67■■□□□ 1.38
SF3B4-202ENST00000457312 MMP10P09238 476 aa23.65■■□□□ 1.38
SF3B4-202ENST00000457312 HMGB2P26583 209 aaKnown RBP23.65■■□□□ 1.38
SF3B4-202ENST00000457312 USP31Q70CQ4 1352 aa23.65■■□□□ 1.38
SF3B4-202ENST00000457312 MAP2P11137 1827 aaKnown RBP23.64■■□□□ 1.38
SF3B4-202ENST00000457312 DPEP1P16444 411 aa23.64■■□□□ 1.37
SF3B4-202ENST00000457312 SSFA2P28290 1259 aa23.64■■□□□ 1.37
SF3B4-202ENST00000457312 MKRN1Q9UHC7 482 aaKnown RBP23.64■■□□□ 1.37
SF3B4-202ENST00000457312 ITGB4P16144 1822 aa23.63■■□□□ 1.37
SF3B4-202ENST00000457312 CTCFP49711 727 aaPredicted RBP23.63■■□□□ 1.37
SF3B4-202ENST00000457312 ZNF692Q9BU19 519 aaPredicted RBP23.63■■□□□ 1.37
SF3B4-202ENST00000457312 C4AP0C0L4 1744 aa23.62■■□□□ 1.37
SF3B4-202ENST00000457312 RGS19P49795 217 aa23.62■■□□□ 1.37
SF3B4-202ENST00000457312 ZCRB1Q8TBF4 217 aaKnown RBP23.61■■□□□ 1.37
SF3B4-202ENST00000457312 VIRMAQ69YN4 1812 aaKnown RBP23.61■■□□□ 1.37
SF3B4-202ENST00000457312 TIAM2Q8IVF5 1701 aa23.6■■□□□ 1.37
SF3B4-202ENST00000457312 DCAF5Q96JK2 942 aa23.59■■□□□ 1.37
SF3B4-202ENST00000457312 KTN1Q86UP2 1357 aaKnown RBP23.58■■□□□ 1.37
SF3B4-202ENST00000457312 CREBZFQ9NS37 354 aa23.58■■□□□ 1.37
SF3B4-202ENST00000457312 KCNA3P22001 575 aa23.57■■□□□ 1.36
SF3B4-202ENST00000457312 TNRC18O15417 2968 aaPredicted RBP23.57■■□□□ 1.36
SF3B4-202ENST00000457312 CNTNAP1P78357 1384 aa23.56■■□□□ 1.36
SF3B4-202ENST00000457312 VEGFAP15692 232 aaPredicted RBP23.56■■□□□ 1.36
SF3B4-202ENST00000457312 LBX1P52954 281 aa23.56■■□□□ 1.36
SF3B4-202ENST00000457312 NBPF1Q3BBV0 1214 aa23.56■■□□□ 1.36
SF3B4-202ENST00000457312 AIDAQ96BJ3 306 aa23.56■■□□□ 1.36
SF3B4-202ENST00000457312 ZC3H4Q9UPT8 1303 aaKnown RBP23.56■■□□□ 1.36
SF3B4-202ENST00000457312 KDM6AO15550 1401 aaPredicted RBP23.55■■□□□ 1.36
SF3B4-202ENST00000457312 LTV1Q96GA3 475 aaPredicted RBP23.54■■□□□ 1.36
SF3B4-202ENST00000457312 LINC00116Q8NCU8 138 aa23.53■■□□□ 1.36
SF3B4-202ENST00000457312 CCDC88AQ3V6T2 1871 aa23.52■■□□□ 1.36
SF3B4-202ENST00000457312 NME9Q86XW9 330 aa23.52■■□□□ 1.36
SF3B4-202ENST00000457312 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.51■■□□□ 1.35
SF3B4-202ENST00000457312 CCDC87Q9NVE4 849 aa23.51■■□□□ 1.35
SF3B4-202ENST00000457312 EVC2Q86UK5 1308 aa23.51■■□□□ 1.35
SF3B4-202ENST00000457312 GLTPD2A6NH11 291 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms