RNA–Protein interactions for RNA: ENST00000457035.5

ATG4A-206, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 939 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-206ENST00000457035 SF3B2Q13435 895 aaKnown RBP13.65□□□□□ -0.22
ATG4A-206ENST00000457035 DEFB132Q7Z7B7 95 aa13.65□□□□□ -0.22
ATG4A-206ENST00000457035 NLRP2Q9NX02 1062 aa13.65□□□□□ -0.22
ATG4A-206ENST00000457035 SMG6Q86US8 1419 aaKnown RBP13.64□□□□□ -0.23
ATG4A-206ENST00000457035 NBPF6Q5VWK0 638 aa13.64□□□□□ -0.23
ATG4A-206ENST00000457035 NBPF4Q96M43 638 aa13.64□□□□□ -0.23
ATG4A-206ENST00000457035 KRT27Q7Z3Y8 459 aa13.63□□□□□ -0.23
ATG4A-206ENST00000457035 REM2Q8IYK8 340 aaPredicted RBP13.63□□□□□ -0.23
ATG4A-206ENST00000457035 FAM208AQ9UK61 1670 aaKnown RBP13.63□□□□□ -0.23
ATG4A-206ENST00000457035 THSD7AQ9UPZ6 1657 aa13.63□□□□□ -0.23
ATG4A-206ENST00000457035 EIF4A2Q14240 407 aaKnown RBP13.62□□□□□ -0.23
ATG4A-206ENST00000457035 KAT6BQ8WYB5 2073 aa13.62□□□□□ -0.23
ATG4A-206ENST00000457035 PPP2R1AP30153 589 aa13.61□□□□□ -0.23
ATG4A-206ENST00000457035 EYA1Q99502 592 aa13.61□□□□□ -0.23
ATG4A-206ENST00000457035 TNS1Q9HBL0 1735 aaKnown RBP13.61□□□□□ -0.23
ATG4A-206ENST00000457035 PARD3Q8TEW0 1356 aa13.6□□□□□ -0.23
ATG4A-206ENST00000457035 WNK3Q9BYP7 1800 aa13.6□□□□□ -0.23
ATG4A-206ENST00000457035 DISP2A7MBM2 1401 aa13.6□□□□□ -0.23
ATG4A-206ENST00000457035 CDCA7Q9BWT1 371 aaPredicted RBP13.6□□□□□ -0.23
ATG4A-206ENST00000457035 PARP4Q9UKK3 1724 aaKnown RBP13.59□□□□□ -0.23
ATG4A-206ENST00000457035 IL13P35225 146 aa13.59□□□□□ -0.23
ATG4A-206ENST00000457035 RALBP1Q15311 655 aa13.59□□□□□ -0.23
ATG4A-206ENST00000457035 USHBP1Q8N6Y0 703 aa13.59□□□□□ -0.23
ATG4A-206ENST00000457035 IL2RBP14784 551 aa13.58□□□□□ -0.24
ATG4A-206ENST00000457035 FAM182BQ5T319 152 aa13.58□□□□□ -0.24
ATG4A-206ENST00000457035 SSUH2Q9Y2M2 353 aa13.58□□□□□ -0.24
ATG4A-206ENST00000457035 NCAPD2Q15021 1401 aa13.57□□□□□ -0.24
ATG4A-206ENST00000457035 EXOC5O00471 708 aa13.57□□□□□ -0.24
ATG4A-206ENST00000457035 DDB1Q16531 1140 aa13.57□□□□□ -0.24
ATG4A-206ENST00000457035 LRP5O75197 1615 aa13.57□□□□□ -0.24
ATG4A-206ENST00000457035 BAG6P46379 1132 aa13.56□□□□□ -0.24
ATG4A-206ENST00000457035 PDE3BQ13370 1112 aa13.56□□□□□ -0.24
ATG4A-206ENST00000457035 CHRDL2Q6WN34 429 aa13.56□□□□□ -0.24
ATG4A-206ENST00000457035 IGSF1Q8N6C5 1336 aa13.56□□□□□ -0.24
ATG4A-206ENST00000457035 DIAPH1O60610 1272 aaKnown RBP13.55□□□□□ -0.24
ATG4A-206ENST00000457035 PRKRIP1Q9H875 184 aaPredicted RBP13.55□□□□□ -0.24
ATG4A-206ENST00000457035 LRRC37A3O60309 1634 aa13.54□□□□□ -0.24
ATG4A-206ENST00000457035 SRCAPQ6ZRS2 3230 aa13.54□□□□□ -0.24
ATG4A-206ENST00000457035 PSDA5PKW4 1024 aaPredicted RBP13.54□□□□□ -0.24
ATG4A-206ENST00000457035 POTEHQ6S545 545 aa13.54□□□□□ -0.24
ATG4A-206ENST00000457035 MARCH10Q8NA82 808 aaPredicted RBP13.54□□□□□ -0.24
ATG4A-206ENST00000457035 COL3A1P02461 1466 aaPredicted RBP13.54□□□□□ -0.24
ATG4A-206ENST00000457035 TATP17735 454 aaPredicted RBP13.53□□□□□ -0.24
ATG4A-206ENST00000457035 RAPGEF4Q8WZA2 1011 aa13.53□□□□□ -0.24
ATG4A-206ENST00000457035 MEGF6O75095 1541 aa13.53□□□□□ -0.24
ATG4A-206ENST00000457035 EN1Q05925 392 aaPredicted RBP13.52□□□□□ -0.25
ATG4A-206ENST00000457035 SULT6B1Q6IMI4 303 aa13.52□□□□□ -0.25
ATG4A-206ENST00000457035 FAM196AQ6ZSG2 479 aa13.52□□□□□ -0.25
ATG4A-206ENST00000457035 AEBP1Q8IUX7 1158 aa13.52□□□□□ -0.25
ATG4A-206ENST00000457035 ZCRB1Q8TBF4 217 aaKnown RBP13.52□□□□□ -0.25
ATG4A-206ENST00000457035 CFAP53Q96M91 514 aa13.52□□□□□ -0.25
ATG4A-206ENST00000457035 SBF2Q86WG5 1849 aa13.51□□□□□ -0.25
ATG4A-206ENST00000457035 OVOS2A0A0G2JMS6 1433 aa13.51□□□□□ -0.25
ATG4A-206ENST00000457035 KDRP35968 1356 aa13.51□□□□□ -0.25
ATG4A-206ENST00000457035 MYBBP1AQ9BQG0 1328 aaKnown RBP13.51□□□□□ -0.25
ATG4A-206ENST00000457035 SHANK3Q9BYB0 1731 aa13.5□□□□□ -0.25
ATG4A-206ENST00000457035 TNS2Q63HR2 1409 aa13.5□□□□□ -0.25
ATG4A-206ENST00000457035 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.5□□□□□ -0.25
ATG4A-206ENST00000457035 RREB1Q92766 1687 aa13.5□□□□□ -0.25
ATG4A-206ENST00000457035 DDX54Q8TDD1 881 aaKnown RBP13.49□□□□□ -0.25
ATG4A-206ENST00000457035 NUP188Q5SRE5 1749 aa13.49□□□□□ -0.25
ATG4A-206ENST00000457035 BCL9O00512 1426 aa13.48□□□□□ -0.25
ATG4A-206ENST00000457035 U2SURPO15042 1029 aaKnown RBP13.48□□□□□ -0.25
ATG4A-206ENST00000457035 CYP27B1O15528 508 aa13.48□□□□□ -0.25
ATG4A-206ENST00000457035 HMOX1P09601 288 aa13.48□□□□□ -0.25
ATG4A-206ENST00000457035 NUDCQ9Y266 331 aa13.48□□□□□ -0.25
ATG4A-206ENST00000457035 PKD1L3Q7Z443 1732 aa13.47□□□□□ -0.25
ATG4A-206ENST00000457035 TRIM37O94972 964 aa13.47□□□□□ -0.25
ATG4A-206ENST00000457035 EZH2Q15910 746 aaKnown RBP13.47□□□□□ -0.25
ATG4A-206ENST00000457035 SPG7Q9UQ90 795 aa13.47□□□□□ -0.25
ATG4A-206ENST00000457035 PLEKHG2Q9H7P9 1386 aa13.46□□□□□ -0.25
ATG4A-206ENST00000457035 PITPNM1O00562 1244 aa13.46□□□□□ -0.25
ATG4A-206ENST00000457035 R3HDM1Q15032 1099 aaKnown RBP13.46□□□□□ -0.25
ATG4A-206ENST00000457035 PLEKHO1Q53GL0 409 aaPredicted RBP13.46□□□□□ -0.25
ATG4A-206ENST00000457035 ANP32CO43423 234 aa13.45□□□□□ -0.26
ATG4A-206ENST00000457035 U2AF1L5P0DN76 240 aaPredicted RBP13.45□□□□□ -0.26
ATG4A-206ENST00000457035 U2AF1Q01081 240 aaKnown RBP eCLIP13.45□□□□□ -0.26
ATG4A-206ENST00000457035 NKX1-1Q15270 411 aaPredicted RBP13.45□□□□□ -0.26
ATG4A-206ENST00000457035 AMOTQ4VCS5 1084 aa13.45□□□□□ -0.26
ATG4A-206ENST00000457035 PTF1AQ7RTS3 328 aa13.45□□□□□ -0.26
ATG4A-206ENST00000457035 PCDH11XQ9BZA7 1347 aa13.44□□□□□ -0.26
ATG4A-206ENST00000457035 PCDH11YQ9BZA8 1340 aa13.44□□□□□ -0.26
ATG4A-206ENST00000457035 KCNQ2O43526 872 aa13.44□□□□□ -0.26
ATG4A-206ENST00000457035 FCHSD2O94868 740 aa13.44□□□□□ -0.26
ATG4A-206ENST00000457035 RSPH6AQ9H0K4 717 aa13.44□□□□□ -0.26
ATG4A-206ENST00000457035 APBA3O96018 575 aa13.43□□□□□ -0.26
ATG4A-206ENST00000457035 PHKG2P15735 406 aa13.43□□□□□ -0.26
ATG4A-206ENST00000457035 IFNL2Q8IZJ0 200 aa13.43□□□□□ -0.26
ATG4A-206ENST00000457035 BCL11BQ9C0K0 894 aaPredicted RBP13.43□□□□□ -0.26
ATG4A-206ENST00000457035 MTHFSDQ2M296 383 aaKnown RBP13.42□□□□□ -0.26
ATG4A-206ENST00000457035 CCDC184Q52MB2 194 aa13.42□□□□□ -0.26
ATG4A-206ENST00000457035 ACSBG1Q96GR2 724 aa13.42□□□□□ -0.26
ATG4A-206ENST00000457035 PHACTR3Q96KR7 559 aa13.42□□□□□ -0.26
ATG4A-206ENST00000457035 ITGB4P16144 1822 aa13.41□□□□□ -0.26
ATG4A-206ENST00000457035 PRKAR2BP31323 418 aa13.41□□□□□ -0.26
ATG4A-206ENST00000457035 PRIM1P49642 420 aaKnown RBP13.41□□□□□ -0.26
ATG4A-206ENST00000457035 ZNF530Q6P9A1 599 aaPredicted RBP13.41□□□□□ -0.26
ATG4A-206ENST00000457035 CAMKK2Q96RR4 588 aa13.41□□□□□ -0.26
ATG4A-206ENST00000457035 PLEKHF1Q96S99 279 aa13.4□□□□□ -0.26
ATG4A-206ENST00000457035 VIRMAQ69YN4 1812 aaKnown RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms