RNA–Protein interactions for RNA: ENST00000454398.1

HLA-DPA3-207, Transcript of major histocompatibility complex, class II, DP alpha 3 (pseudogene), humanhuman

BASIC

Gene HLA-DPA3, Length 229 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA3-207ENST00000454398 NLGN2Q8NFZ4 835 aa8.53□□□□□ -1.04
HLA-DPA3-207ENST00000454398 ARXQ96QS3 562 aa8.53□□□□□ -1.04
HLA-DPA3-207ENST00000454398 TESK2Q96S53 571 aa8.53□□□□□ -1.04
HLA-DPA3-207ENST00000454398 ZNF692Q9BU19 519 aaPredicted RBP8.53□□□□□ -1.04
HLA-DPA3-207ENST00000454398 MAP3K19Q56UN5 1328 aa8.53□□□□□ -1.04
HLA-DPA3-207ENST00000454398 TONSLQ96HA7 1378 aa8.52□□□□□ -1.05
HLA-DPA3-207ENST00000454398 RRS1Q15050 365 aaKnown RBP8.52□□□□□ -1.05
HLA-DPA3-207ENST00000454398 HDGFL2Q7Z4V5 671 aaPredicted RBP8.52□□□□□ -1.05
HLA-DPA3-207ENST00000454398 SENP3-EIF4A1A0A087X0R7 540 aa8.51□□□□□ -1.05
HLA-DPA3-207ENST00000454398 SMIM5Q71RC9 77 aa8.51□□□□□ -1.05
HLA-DPA3-207ENST00000454398 WWC3Q9ULE0 1092 aa8.51□□□□□ -1.05
HLA-DPA3-207ENST00000454398 ANKRD36BQ8N2N9 1353 aa8.5□□□□□ -1.05
HLA-DPA3-207ENST00000454398 MAP3K5Q99683 1374 aa8.5□□□□□ -1.05
HLA-DPA3-207ENST00000454398 HOXC9P31274 260 aa8.5□□□□□ -1.05
HLA-DPA3-207ENST00000454398 PRIM1P49642 420 aaKnown RBP8.5□□□□□ -1.05
HLA-DPA3-207ENST00000454398 YBX3P16989 372 aaKnown RBP eCLIP8.49□□□□□ -1.05
HLA-DPA3-207ENST00000454398 GPR162Q16538 588 aa8.49□□□□□ -1.05
HLA-DPA3-207ENST00000454398 IP6K1Q92551 441 aa8.49□□□□□ -1.05
HLA-DPA3-207ENST00000454398 TERF2IPQ9NYB0 399 aa8.49□□□□□ -1.05
HLA-DPA3-207ENST00000454398 TFCP2L1Q9NZI6 479 aa8.49□□□□□ -1.05
HLA-DPA3-207ENST00000454398 TAF1LQ8IZX4 1826 aa8.49□□□□□ -1.05
HLA-DPA3-207ENST00000454398 ST20-MTHFSA0A0A6YYL1 179 aa8.48□□□□□ -1.05
HLA-DPA3-207ENST00000454398 MSH5O43196 834 aa8.48□□□□□ -1.05
HLA-DPA3-207ENST00000454398 AMPHP49418 695 aa8.48□□□□□ -1.05
HLA-DPA3-207ENST00000454398 COG3Q96JB2 828 aa8.48□□□□□ -1.05
HLA-DPA3-207ENST00000454398 GGNBP2Q9H3C7 697 aa8.48□□□□□ -1.05
HLA-DPA3-207ENST00000454398 CCNL1Q9UK58 526 aaPredicted RBP8.48□□□□□ -1.05
HLA-DPA3-207ENST00000454398 PKD1L3Q7Z443 1732 aa8.48□□□□□ -1.05
HLA-DPA3-207ENST00000454398 ITGB4P16144 1822 aa8.47□□□□□ -1.05
HLA-DPA3-207ENST00000454398 C4BP0C0L5 1744 aa8.47□□□□□ -1.05
HLA-DPA3-207ENST00000454398 NBPF6Q5VWK0 638 aa8.47□□□□□ -1.05
HLA-DPA3-207ENST00000454398 NBPF4Q96M43 638 aa8.47□□□□□ -1.05
HLA-DPA3-207ENST00000454398 RTL1A6NKG5 1358 aa8.47□□□□□ -1.05
HLA-DPA3-207ENST00000454398 USP47Q96K76 1375 aa8.47□□□□□ -1.05
HLA-DPA3-207ENST00000454398 SMG6Q86US8 1419 aaKnown RBP8.46□□□□□ -1.05
HLA-DPA3-207ENST00000454398 ANKRD26Q9UPS8 1709 aa8.46□□□□□ -1.05
HLA-DPA3-207ENST00000454398 POLD1P28340 1107 aa8.46□□□□□ -1.06
HLA-DPA3-207ENST00000454398 SLC27A3Q5K4L6 730 aa8.46□□□□□ -1.06
HLA-DPA3-207ENST00000454398 COL23A1Q86Y22 540 aaPredicted RBP8.46□□□□□ -1.06
HLA-DPA3-207ENST00000454398 PALLDQ8WX93 1383 aa8.46□□□□□ -1.06
HLA-DPA3-207ENST00000454398 UBR3Q6ZT12 1888 aa8.45□□□□□ -1.06
HLA-DPA3-207ENST00000454398 C1QTNF8P60827 252 aa8.45□□□□□ -1.06
HLA-DPA3-207ENST00000454398 ZCRB1Q8TBF4 217 aaKnown RBP8.45□□□□□ -1.06
HLA-DPA3-207ENST00000454398 NSD3Q9BZ95 1437 aa8.45□□□□□ -1.06
HLA-DPA3-207ENST00000454398 ATP10DQ9P241 1426 aa8.45□□□□□ -1.06
HLA-DPA3-207ENST00000454398 FYB1O15117 783 aa8.44□□□□□ -1.06
HLA-DPA3-207ENST00000454398 GIGYF1O75420 1035 aaPredicted RBP8.44□□□□□ -1.06
HLA-DPA3-207ENST00000454398 PHF14O94880 888 aa8.44□□□□□ -1.06
HLA-DPA3-207ENST00000454398 HSP90AB2PQ58FF8 381 aa8.44□□□□□ -1.06
HLA-DPA3-207ENST00000454398 ZNF526Q8TF50 670 aaPredicted RBP8.44□□□□□ -1.06
HLA-DPA3-207ENST00000454398 EMILIN1Q9Y6C2 1016 aa8.44□□□□□ -1.06
HLA-DPA3-207ENST00000454398 MAP2P11137 1827 aaKnown RBP8.44□□□□□ -1.06
HLA-DPA3-207ENST00000454398 CYP27B1O15528 508 aa8.43□□□□□ -1.06
HLA-DPA3-207ENST00000454398 CARD14Q9BXL6 1004 aa8.43□□□□□ -1.06
HLA-DPA3-207ENST00000454398 FLT4P35916 1363 aa8.43□□□□□ -1.06
HLA-DPA3-207ENST00000454398 NCAPD2Q15021 1401 aa8.43□□□□□ -1.06
HLA-DPA3-207ENST00000454398 PPM1GO15355 546 aaPredicted RBP8.42□□□□□ -1.06
HLA-DPA3-207ENST00000454398 MPRIPQ6WCQ1 1025 aa8.42□□□□□ -1.06
HLA-DPA3-207ENST00000454398 RAPGEF4Q8WZA2 1011 aa8.42□□□□□ -1.06
HLA-DPA3-207ENST00000454398 PCDH11XQ9BZA7 1347 aa8.42□□□□□ -1.06
HLA-DPA3-207ENST00000454398 PCDH11YQ9BZA8 1340 aa8.42□□□□□ -1.06
HLA-DPA3-207ENST00000454398 KIAA1551Q9HCM1 1747 aa8.41□□□□□ -1.06
HLA-DPA3-207ENST00000454398 ADCY9O60503 1353 aa8.41□□□□□ -1.06
HLA-DPA3-207ENST00000454398 INSRP06213 1382 aa8.41□□□□□ -1.06
HLA-DPA3-207ENST00000454398 TATP17735 454 aaPredicted RBP8.41□□□□□ -1.06
HLA-DPA3-207ENST00000454398 SLC16A10Q8TF71 515 aa8.41□□□□□ -1.06
HLA-DPA3-207ENST00000454398 PUS7Q96PZ0 661 aaKnown RBP8.41□□□□□ -1.06
HLA-DPA3-207ENST00000454398 CICQ96RK0 1608 aaPredicted RBP8.4□□□□□ -1.06
HLA-DPA3-207ENST00000454398 LINC00116Q8NCU8 138 aa8.4□□□□□ -1.06
HLA-DPA3-207ENST00000454398 N4BP2Q86UW6 1770 aaPredicted RBP8.4□□□□□ -1.07
HLA-DPA3-207ENST00000454398 C4AP0C0L4 1744 aa8.4□□□□□ -1.07
HLA-DPA3-207ENST00000454398 IGSF1Q8N6C5 1336 aa8.39□□□□□ -1.07
HLA-DPA3-207ENST00000454398 TNNT2P45379 298 aaPredicted RBP8.39□□□□□ -1.07
HLA-DPA3-207ENST00000454398 ITPK1Q13572 414 aa8.39□□□□□ -1.07
HLA-DPA3-207ENST00000454398 AK7Q96M32 723 aa8.39□□□□□ -1.07
HLA-DPA3-207ENST00000454398 SLC4A9Q96Q91 983 aa8.39□□□□□ -1.07
HLA-DPA3-207ENST00000454398 COL5A3P25940 1745 aaPredicted RBP8.38□□□□□ -1.07
HLA-DPA3-207ENST00000454398 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.38□□□□□ -1.07
HLA-DPA3-207ENST00000454398 TMF1P82094 1093 aa8.38□□□□□ -1.07
HLA-DPA3-207ENST00000454398 PIGBQ92521 554 aa8.38□□□□□ -1.07
HLA-DPA3-207ENST00000454398 POLR3GLQ9BT43 218 aa8.38□□□□□ -1.07
HLA-DPA3-207ENST00000454398 PXDNLA1KZ92 1463 aa8.38□□□□□ -1.07
HLA-DPA3-207ENST00000454398 CGNL1Q0VF96 1302 aa8.37□□□□□ -1.07
HLA-DPA3-207ENST00000454398 GNPATO15228 680 aa8.37□□□□□ -1.07
HLA-DPA3-207ENST00000454398 ASAP1Q9ULH1 1129 aa8.37□□□□□ -1.07
HLA-DPA3-207ENST00000454398 KDRP35968 1356 aa8.36□□□□□ -1.07
HLA-DPA3-207ENST00000454398 KDM6AO15550 1401 aaPredicted RBP8.36□□□□□ -1.07
HLA-DPA3-207ENST00000454398 KIF13BQ9NQT8 1826 aa8.36□□□□□ -1.07
HLA-DPA3-207ENST00000454398 TJP1Q07157 1748 aa8.35□□□□□ -1.07
HLA-DPA3-207ENST00000454398 LOC102724428A0A0B4J2F2 783 aa8.35□□□□□ -1.07
HLA-DPA3-207ENST00000454398 SIK1P57059 783 aa8.35□□□□□ -1.07
HLA-DPA3-207ENST00000454398 EYA1Q99502 592 aa8.35□□□□□ -1.07
HLA-DPA3-207ENST00000454398 GPBP1L1Q9HC44 474 aaPredicted RBP8.35□□□□□ -1.07
HLA-DPA3-207ENST00000454398 TMOD3Q9NYL9 352 aa8.35□□□□□ -1.07
HLA-DPA3-207ENST00000454398 MYH14Q7Z406 1995 aaKnown RBP8.35□□□□□ -1.07
HLA-DPA3-207ENST00000454398 BRCA1P38398 1863 aaKnown RBP8.34□□□□□ -1.07
HLA-DPA3-207ENST00000454398 GRIN3BO60391 1043 aa8.34□□□□□ -1.07
HLA-DPA3-207ENST00000454398 MMP10P09238 476 aa8.34□□□□□ -1.07
HLA-DPA3-207ENST00000454398 NKX1-1Q15270 411 aaPredicted RBP8.34□□□□□ -1.07
HLA-DPA3-207ENST00000454398 ATG3Q9NT62 314 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms