RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 PPM1GO15355 546 aaPredicted RBP27.18■■□□□ 1.94
COL9A3-202ENST00000452372 ANO8Q9HCE9 1232 aaPredicted RBP27.18■■□□□ 1.94
COL9A3-202ENST00000452372 CC2D1BQ5T0F9 858 aaKnown RBP27.16■■□□□ 1.94
COL9A3-202ENST00000452372 SMG6Q86US8 1419 aaKnown RBP27.15■■□□□ 1.94
COL9A3-202ENST00000452372 KAT6BQ8WYB5 2073 aa27.14■■□□□ 1.94
COL9A3-202ENST00000452372 TXNRD1Q16881 649 aa27.13■■□□□ 1.93
COL9A3-202ENST00000452372 RGPD2P0DJD1 1756 aa27.12■■□□□ 1.93
COL9A3-202ENST00000452372 ACSBG1Q96GR2 724 aa27.12■■□□□ 1.93
COL9A3-202ENST00000452372 NBPF6Q5VWK0 638 aa27.11■■□□□ 1.93
COL9A3-202ENST00000452372 NBPF4Q96M43 638 aa27.11■■□□□ 1.93
COL9A3-202ENST00000452372 PDGFDQ9GZP0 370 aaPredicted RBP27.11■■□□□ 1.93
COL9A3-202ENST00000452372 NHSQ6T4R5 1651 aa27.09■■□□□ 1.93
COL9A3-202ENST00000452372 SPON1Q9HCB6 807 aa27.08■■□□□ 1.93
COL9A3-202ENST00000452372 CASZ1Q86V15 1759 aa27.07■■□□□ 1.92
COL9A3-202ENST00000452372 CNGB1Q14028 1251 aaPredicted RBP27.06■■□□□ 1.92
COL9A3-202ENST00000452372 EIF4A2Q14240 407 aaKnown RBP27.04■■□□□ 1.92
COL9A3-202ENST00000452372 USHBP1Q8N6Y0 703 aa27.04■■□□□ 1.92
COL9A3-202ENST00000452372 BTAF1O14981 1849 aa27.03■■□□□ 1.92
COL9A3-202ENST00000452372 MTHFSP49914 203 aa27.03■■□□□ 1.92
COL9A3-202ENST00000452372 DDX10Q13206 875 aaKnown RBP27.03■■□□□ 1.92
COL9A3-202ENST00000452372 DDX54Q8TDD1 881 aaKnown RBP27.03■■□□□ 1.92
COL9A3-202ENST00000452372 SLC15A2Q16348 729 aa27.02■■□□□ 1.92
COL9A3-202ENST00000452372 EYA1Q99502 592 aa27.02■■□□□ 1.92
COL9A3-202ENST00000452372 NCAPD2Q15021 1401 aa26.99■■□□□ 1.91
COL9A3-202ENST00000452372 RAPGEF4Q8WZA2 1011 aa26.99■■□□□ 1.91
COL9A3-202ENST00000452372 STK32BQ9NY57 414 aa26.99■■□□□ 1.91
COL9A3-202ENST00000452372 LRRC4BQ9NT99 713 aa26.98■■□□□ 1.91
COL9A3-202ENST00000452372 MEGF6O75095 1541 aa26.98■■□□□ 1.91
COL9A3-202ENST00000452372 SHANK3Q9BYB0 1731 aa26.97■■□□□ 1.91
COL9A3-202ENST00000452372 ZBTB7AO95365 584 aa26.96■■□□□ 1.91
COL9A3-202ENST00000452372 TATP17735 454 aaPredicted RBP26.96■■□□□ 1.91
COL9A3-202ENST00000452372 PTGER2P43116 358 aa26.96■■□□□ 1.91
COL9A3-202ENST00000452372 ZCRB1Q8TBF4 217 aaKnown RBP26.96■■□□□ 1.91
COL9A3-202ENST00000452372 PAPPAQ13219 1627 aa26.95■■□□□ 1.91
COL9A3-202ENST00000452372 IL13P35225 146 aa26.94■■□□□ 1.9
COL9A3-202ENST00000452372 PPP1R1BQ9UD71 204 aaPredicted RBP26.94■■□□□ 1.9
COL9A3-202ENST00000452372 IGSF1Q8N6C5 1336 aa26.93■■□□□ 1.9
COL9A3-202ENST00000452372 ZNF316A6NFI3 1004 aaPredicted RBP26.93■■□□□ 1.9
COL9A3-202ENST00000452372 PRIM1P49642 420 aaKnown RBP26.93■■□□□ 1.9
COL9A3-202ENST00000452372 ATF5Q9Y2D1 282 aaPredicted RBP26.93■■□□□ 1.9
COL9A3-202ENST00000452372 PPP2R1AP30153 589 aa26.91■■□□□ 1.9
COL9A3-202ENST00000452372 ZNF827Q17R98 1081 aa26.91■■□□□ 1.9
COL9A3-202ENST00000452372 SGIP1Q9BQI5 828 aa26.9■■□□□ 1.9
COL9A3-202ENST00000452372 DIAPH1O60610 1272 aaKnown RBP26.89■■□□□ 1.9
COL9A3-202ENST00000452372 AKT1S1Q96B36 256 aa26.88■■□□□ 1.89
COL9A3-202ENST00000452372 DOT1LQ8TEK3 1739 aa26.87■■□□□ 1.89
COL9A3-202ENST00000452372 KCNQ4P56696 695 aa26.86■■□□□ 1.89
COL9A3-202ENST00000452372 SLC27A3Q5K4L6 730 aa26.86■■□□□ 1.89
COL9A3-202ENST00000452372 SYTL4Q96C24 671 aaPredicted RBP26.86■■□□□ 1.89
COL9A3-202ENST00000452372 MTFR1LQ9H019 292 aa26.86■■□□□ 1.89
COL9A3-202ENST00000452372 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.86■■□□□ 1.89
COL9A3-202ENST00000452372 COL3A1P02461 1466 aaPredicted RBP26.85■■□□□ 1.89
COL9A3-202ENST00000452372 PLEKHG2Q9H7P9 1386 aa26.84■■□□□ 1.89
COL9A3-202ENST00000452372 RALBP1Q15311 655 aa26.84■■□□□ 1.89
COL9A3-202ENST00000452372 SULT6B1Q6IMI4 303 aa26.84■■□□□ 1.89
COL9A3-202ENST00000452372 CFAP53Q96M91 514 aa26.84■■□□□ 1.89
COL9A3-202ENST00000452372 SPG7Q9UQ90 795 aa26.84■■□□□ 1.89
COL9A3-202ENST00000452372 PKD1L3Q7Z443 1732 aa26.84■■□□□ 1.89
COL9A3-202ENST00000452372 PCDH11XQ9BZA7 1347 aa26.84■■□□□ 1.89
COL9A3-202ENST00000452372 PCDH11YQ9BZA8 1340 aa26.84■■□□□ 1.89
COL9A3-202ENST00000452372 KDRP35968 1356 aa26.84■■□□□ 1.89
COL9A3-202ENST00000452372 AEBP1Q8IUX7 1158 aa26.83■■□□□ 1.89
COL9A3-202ENST00000452372 LY75O60449 1722 aa26.82■■□□□ 1.88
COL9A3-202ENST00000452372 CYP27B1O15528 508 aa26.81■■□□□ 1.88
COL9A3-202ENST00000452372 FHDC1Q9C0D6 1143 aaPredicted RBP26.78■■□□□ 1.88
COL9A3-202ENST00000452372 QSER1Q2KHR3 1735 aa26.77■■□□□ 1.88
COL9A3-202ENST00000452372 PNPLA7Q6ZV29 1317 aa26.77■■□□□ 1.88
COL9A3-202ENST00000452372 PLEKHO1Q53GL0 409 aaPredicted RBP26.77■■□□□ 1.88
COL9A3-202ENST00000452372 SYT17Q9BSW7 474 aa26.77■■□□□ 1.88
COL9A3-202ENST00000452372 U2SURPO15042 1029 aaKnown RBP26.76■■□□□ 1.87
COL9A3-202ENST00000452372 HMOX1P09601 288 aa26.76■■□□□ 1.87
COL9A3-202ENST00000452372 AMOTQ4VCS5 1084 aa26.76■■□□□ 1.87
COL9A3-202ENST00000452372 TUBGCP6Q96RT7 1819 aa26.76■■□□□ 1.87
COL9A3-202ENST00000452372 NKX1-1Q15270 411 aaPredicted RBP26.75■■□□□ 1.87
COL9A3-202ENST00000452372 IFNL2Q8IZJ0 200 aa26.75■■□□□ 1.87
COL9A3-202ENST00000452372 NUDCQ9Y266 331 aa26.75■■□□□ 1.87
COL9A3-202ENST00000452372 CCNL1Q9UK58 526 aaPredicted RBP26.74■■□□□ 1.87
COL9A3-202ENST00000452372 UTRNP46939 3433 aa26.73■■□□□ 1.87
COL9A3-202ENST00000452372 PHKG2P15735 406 aa26.73■■□□□ 1.87
COL9A3-202ENST00000452372 SLC16A10Q8TF71 515 aa26.73■■□□□ 1.87
COL9A3-202ENST00000452372 ARXQ96QS3 562 aa26.73■■□□□ 1.87
COL9A3-202ENST00000452372 TFCP2L1Q9NZI6 479 aa26.72■■□□□ 1.87
COL9A3-202ENST00000452372 COL24A1Q17RW2 1714 aa26.72■■□□□ 1.87
COL9A3-202ENST00000452372 PRKRIP1Q9H875 184 aaPredicted RBP26.71■■□□□ 1.87
COL9A3-202ENST00000452372 ITGB4P16144 1822 aa26.71■■□□□ 1.87
COL9A3-202ENST00000452372 TOGARAM1Q9Y4F4 1720 aa26.7■■□□□ 1.87
COL9A3-202ENST00000452372 MYBBP1AQ9BQG0 1328 aaKnown RBP26.7■■□□□ 1.87
COL9A3-202ENST00000452372 YY1P25490 414 aa26.7■■□□□ 1.86
COL9A3-202ENST00000452372 ZNF530Q6P9A1 599 aaPredicted RBP26.69■■□□□ 1.86
COL9A3-202ENST00000452372 MPRIPQ6WCQ1 1025 aa26.69■■□□□ 1.86
COL9A3-202ENST00000452372 DCAF8L1A6NGE4 600 aa26.68■■□□□ 1.86
COL9A3-202ENST00000452372 HSP90AB1P08238 724 aaKnown RBP26.66■■□□□ 1.86
COL9A3-202ENST00000452372 U2AF1L5P0DN76 240 aaPredicted RBP26.66■■□□□ 1.86
COL9A3-202ENST00000452372 U2AF1Q01081 240 aaKnown RBP eCLIP26.66■■□□□ 1.86
COL9A3-202ENST00000452372 COL23A1Q86Y22 540 aaPredicted RBP26.66■■□□□ 1.86
COL9A3-202ENST00000452372 PIGBQ92521 554 aa26.66■■□□□ 1.86
COL9A3-202ENST00000452372 MAP3K5Q99683 1374 aa26.66■■□□□ 1.86
COL9A3-202ENST00000452372 C1orf141Q5JVX7 400 aa26.64■■□□□ 1.86
COL9A3-202ENST00000452372 DCAF5Q96JK2 942 aa26.64■■□□□ 1.86
COL9A3-202ENST00000452372 TAF1LQ8IZX4 1826 aa26.64■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms