RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 CCDC9Q9Y3X0 531 aaKnown RBP15.45■□□□□ 0.06
SCN9A-204ENST00000452182 DISP2A7MBM2 1401 aa15.44■□□□□ 0.06
SCN9A-204ENST00000452182 PARP4Q9UKK3 1724 aaKnown RBP15.44■□□□□ 0.06
SCN9A-204ENST00000452182 FCHSD2O94868 740 aa15.44■□□□□ 0.06
SCN9A-204ENST00000452182 WDR43Q15061 677 aaKnown RBP eCLIP15.44■□□□□ 0.06
SCN9A-204ENST00000452182 USP35Q9P2H5 1018 aa15.44■□□□□ 0.06
SCN9A-204ENST00000452182 ONECUT3O60422 494 aaPredicted RBP15.43■□□□□ 0.06
SCN9A-204ENST00000452182 RBM6P78332 1123 aaKnown RBP15.43■□□□□ 0.06
SCN9A-204ENST00000452182 USHBP1Q8N6Y0 703 aa15.43■□□□□ 0.06
SCN9A-204ENST00000452182 THSD7AQ9UPZ6 1657 aa15.43■□□□□ 0.06
SCN9A-204ENST00000452182 IL2RBP14784 551 aa15.43■□□□□ 0.06
SCN9A-204ENST00000452182 AEBP1Q8IUX7 1158 aa15.43■□□□□ 0.06
SCN9A-204ENST00000452182 RSPH6AQ9H0K4 717 aa15.43■□□□□ 0.06
SCN9A-204ENST00000452182 HMOX1P09601 288 aa15.42■□□□□ 0.06
SCN9A-204ENST00000452182 RAPGEF4Q8WZA2 1011 aa15.42■□□□□ 0.06
SCN9A-204ENST00000452182 PNNQ9H307 717 aaKnown RBP15.42■□□□□ 0.06
SCN9A-204ENST00000452182 ADAMTS8Q9UP79 889 aa15.42■□□□□ 0.06
SCN9A-204ENST00000452182 MEGF6O75095 1541 aa15.42■□□□□ 0.06
SCN9A-204ENST00000452182 OVOS2A0A0G2JMS6 1433 aa15.41■□□□□ 0.06
SCN9A-204ENST00000452182 PKD1L3Q7Z443 1732 aa15.41■□□□□ 0.06
SCN9A-204ENST00000452182 TATP17735 454 aaPredicted RBP15.4■□□□□ 0.06
SCN9A-204ENST00000452182 POTEAQ6S8J7 498 aa15.4■□□□□ 0.06
SCN9A-204ENST00000452182 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.4■□□□□ 0.061e-7■■■□□ 17.3
SCN9A-204ENST00000452182 RXRBP28702 533 aa15.39■□□□□ 0.05
SCN9A-204ENST00000452182 FAM98CQ17RN3 349 aaKnown RBP15.39■□□□□ 0.05
SCN9A-204ENST00000452182 PRKAR2BP31323 418 aa15.39■□□□□ 0.05
SCN9A-204ENST00000452182 PLEKHF1Q96S99 279 aa15.39■□□□□ 0.05
SCN9A-204ENST00000452182 LRRC37A3O60309 1634 aa15.38■□□□□ 0.05
SCN9A-204ENST00000452182 AMOTQ4VCS5 1084 aa15.38■□□□□ 0.05
SCN9A-204ENST00000452182 SHANK3Q9BYB0 1731 aa15.37■□□□□ 0.05
SCN9A-204ENST00000452182 TNS2Q63HR2 1409 aa15.37■□□□□ 0.05
SCN9A-204ENST00000452182 EXOC5O00471 708 aa15.35■□□□□ 0.05
SCN9A-204ENST00000452182 NEFMP07197 916 aa15.35■□□□□ 0.05
SCN9A-204ENST00000452182 DDB1Q16531 1140 aa15.35■□□□□ 0.05
SCN9A-204ENST00000452182 PLEKHO1Q53GL0 409 aaPredicted RBP15.35■□□□□ 0.05
SCN9A-204ENST00000452182 FAM9BQ8IZU0 186 aa15.35■□□□□ 0.05
SCN9A-204ENST00000452182 ZCRB1Q8TBF4 217 aaKnown RBP15.35■□□□□ 0.05
SCN9A-204ENST00000452182 RUNDC1Q96C34 613 aa15.35■□□□□ 0.05
SCN9A-204ENST00000452182 SPG7Q9UQ90 795 aa15.35■□□□□ 0.05
SCN9A-204ENST00000452182 SEPT12Q8IYM1 358 aa15.35■□□□□ 0.05
SCN9A-204ENST00000452182 PHACTR3Q96KR7 559 aa15.35■□□□□ 0.05
SCN9A-204ENST00000452182 PCDH11XQ9BZA7 1347 aa15.33■□□□□ 0.05
SCN9A-204ENST00000452182 PCDH11YQ9BZA8 1340 aa15.33■□□□□ 0.05
SCN9A-204ENST00000452182 MAPK8IP3Q9UPT6 1336 aa15.33■□□□□ 0.05
SCN9A-204ENST00000452182 RGS12O14924 1447 aa15.33■□□□□ 0.04
SCN9A-204ENST00000452182 BRWD3Q6RI45 1802 aa15.33■□□□□ 0.04
SCN9A-204ENST00000452182 GAS2L2Q8NHY3 880 aa15.33■□□□□ 0.04
SCN9A-204ENST00000452182 MTHFSDQ2M296 383 aaKnown RBP15.32■□□□□ 0.04
SCN9A-204ENST00000452182 A0A0G2JS52 829 aa15.32■□□□□ 0.04
SCN9A-204ENST00000452182 MYT1Q01538 1121 aa15.32■□□□□ 0.04
SCN9A-204ENST00000452182 CCDC146Q8IYE0 955 aa15.32■□□□□ 0.04
SCN9A-204ENST00000452182 FKBP8Q14318 412 aa15.31■□□□□ 0.04
SCN9A-204ENST00000452182 IFNL2Q8IZJ0 200 aa15.31■□□□□ 0.04
SCN9A-204ENST00000452182 CYP27B1O15528 508 aa15.3■□□□□ 0.04
SCN9A-204ENST00000452182 PDE3BQ13370 1112 aa15.3■□□□□ 0.04
SCN9A-204ENST00000452182 NFE2L2Q16236 605 aa15.3■□□□□ 0.04
SCN9A-204ENST00000452182 ZNF530Q6P9A1 599 aaPredicted RBP15.3■□□□□ 0.04
SCN9A-204ENST00000452182 DLG5Q8TDM6 1919 aa15.3■□□□□ 0.04
SCN9A-204ENST00000452182 PHKG2P15735 406 aa15.29■□□□□ 0.04
SCN9A-204ENST00000452182 NKX1-1Q15270 411 aaPredicted RBP15.29■□□□□ 0.04
SCN9A-204ENST00000452182 AKAP4Q5JQC9 854 aa15.29■□□□□ 0.04
SCN9A-204ENST00000452182 BCL9O00512 1426 aa15.29■□□□□ 0.04
SCN9A-204ENST00000452182 ADAMTS7Q9UKP4 1686 aa15.29■□□□□ 0.04
SCN9A-204ENST00000452182 TMPOP42166 694 aaKnown RBP15.28■□□□□ 0.04
SCN9A-204ENST00000452182 C1orf141Q5JVX7 400 aa15.28■□□□□ 0.04
SCN9A-204ENST00000452182 KRT27Q7Z3Y8 459 aa15.28■□□□□ 0.04
SCN9A-204ENST00000452182 MARCH10Q8NA82 808 aaPredicted RBP15.28■□□□□ 0.04
SCN9A-204ENST00000452182 MAP3K5Q99683 1374 aa15.28■□□□□ 0.04
SCN9A-204ENST00000452182 APAF1O14727 1248 aa15.28■□□□□ 0.04
SCN9A-204ENST00000452182 HTATSF1O43719 755 aaKnown RBP15.28■□□□□ 0.04
SCN9A-204ENST00000452182 HSP90AB1P08238 724 aaKnown RBP15.28■□□□□ 0.04
SCN9A-204ENST00000452182 DDX54Q8TDD1 881 aaKnown RBP15.28■□□□□ 0.04
SCN9A-204ENST00000452182 GNAT3A8MTJ3 354 aa15.27■□□□□ 0.03
SCN9A-204ENST00000452182 NGEFQ8N5V2 710 aa15.27■□□□□ 0.03
SCN9A-204ENST00000452182 VIRMAQ69YN4 1812 aaKnown RBP15.27■□□□□ 0.03
SCN9A-204ENST00000452182 SCN11AQ9UI33 1791 aa15.26■□□□□ 0.03
SCN9A-204ENST00000452182 DCAF5Q96JK2 942 aa15.26■□□□□ 0.03
SCN9A-204ENST00000452182 RIPK4P57078 832 aa15.25■□□□□ 0.03
SCN9A-204ENST00000452182 LMOD3Q0VAK6 560 aa15.25■□□□□ 0.03
SCN9A-204ENST00000452182 KDM6AO15550 1401 aaPredicted RBP15.24■□□□□ 0.03
SCN9A-204ENST00000452182 CCDC27Q2M243 656 aa15.24■□□□□ 0.03
SCN9A-204ENST00000452182 CEMIPQ8WUJ3 1361 aa15.23■□□□□ 0.03
SCN9A-204ENST00000452182 TOGARAM1Q9Y4F4 1720 aa15.23■□□□□ 0.03
SCN9A-204ENST00000452182 FAM196AQ6ZSG2 479 aa15.23■□□□□ 0.03
SCN9A-204ENST00000452182 RTF1Q92541 710 aaKnown RBP15.23■□□□□ 0.03
SCN9A-204ENST00000452182 RRP7AQ9Y3A4 280 aaKnown RBP15.23■□□□□ 0.03
SCN9A-204ENST00000452182 SBF2Q86WG5 1849 aa15.23■□□□□ 0.03
SCN9A-204ENST00000452182 DOT1LQ8TEK3 1739 aa15.22■□□□□ 0.03
SCN9A-204ENST00000452182 MPRIPQ6WCQ1 1025 aa15.22■□□□□ 0.03
SCN9A-204ENST00000452182 IL17REQ8NFR9 667 aa15.22■□□□□ 0.03
SCN9A-204ENST00000452182 ZNF219Q9P2Y4 722 aaPredicted RBP15.22■□□□□ 0.03
SCN9A-204ENST00000452182 TRIM35Q9UPQ4 493 aa15.22■□□□□ 0.03
SCN9A-204ENST00000452182 MRC1P22897 1456 aa15.22■□□□□ 0.03
SCN9A-204ENST00000452182 EP400Q96L91 3159 aa15.22■□□□□ 0.03
SCN9A-204ENST00000452182 ERVV-2B6SEH9 535 aa15.21■□□□□ 0.03
SCN9A-204ENST00000452182 RNMTO43148 476 aaKnown RBP15.21■□□□□ 0.03
SCN9A-204ENST00000452182 NEUROD2Q15784 382 aa15.21■□□□□ 0.03
SCN9A-204ENST00000452182 ITGB4P16144 1822 aa15.21■□□□□ 0.03
SCN9A-204ENST00000452182 SIPA1L3O60292 1781 aaPredicted RBP15.21■□□□□ 0.02
SCN9A-204ENST00000452182 NHSQ6T4R5 1651 aa15.21■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms