RNA–Protein interactions for RNA: ENST00000452162.5

PKP4-206, Transcript of plakophilin 4, humanhuman

TSL 1 (best)

Gene PKP4, Length 2,359 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-206ENST00000452162 ERBB3P21860 1342 aa13.97□□□□□ -0.17
PKP4-206ENST00000452162 CRB1P82279 1406 aa13.97□□□□□ -0.17
PKP4-206ENST00000452162 CDK12Q9NYV4 1490 aaPredicted RBP13.97□□□□□ -0.17
PKP4-206ENST00000452162 HSP90AB2PQ58FF8 381 aa13.97□□□□□ -0.17
PKP4-206ENST00000452162 RTL1A6NKG5 1358 aa13.97□□□□□ -0.17
PKP4-206ENST00000452162 BRWD3Q6RI45 1802 aa13.96□□□□□ -0.17
PKP4-206ENST00000452162 EP400Q96L91 3159 aa13.96□□□□□ -0.17
PKP4-206ENST00000452162 FLT4P35916 1363 aa13.96□□□□□ -0.17
PKP4-206ENST00000452162 NCBP3Q53F19 620 aaKnown RBP13.96□□□□□ -0.18
PKP4-206ENST00000452162 TCP11L2Q8N4U5 519 aa13.96□□□□□ -0.18
PKP4-206ENST00000452162 CRBNQ96SW2 442 aa13.96□□□□□ -0.18
PKP4-206ENST00000452162 ONECUT3O60422 494 aaPredicted RBP13.95□□□□□ -0.18
PKP4-206ENST00000452162 KIF24Q5T7B8 1368 aa13.94□□□□□ -0.18
PKP4-206ENST00000452162 CCDC27Q2M243 656 aa13.94□□□□□ -0.18
PKP4-206ENST00000452162 C20orf194Q5TEA3 1177 aa13.94□□□□□ -0.18
PKP4-206ENST00000452162 SEPT12Q8IYM1 358 aa13.94□□□□□ -0.18
PKP4-206ENST00000452162 CARD10Q9BWT7 1032 aa13.94□□□□□ -0.18
PKP4-206ENST00000452162 NLRP2Q9NX02 1062 aa13.94□□□□□ -0.18
PKP4-206ENST00000452162 A0A0G2JS52 829 aa13.93□□□□□ -0.18
PKP4-206ENST00000452162 U2AF1L5P0DN76 240 aaPredicted RBP13.93□□□□□ -0.18
PKP4-206ENST00000452162 U2AF1Q01081 240 aaKnown RBP eCLIP13.93□□□□□ -0.18
PKP4-206ENST00000452162 RRP7AQ9Y3A4 280 aaKnown RBP13.93□□□□□ -0.18
PKP4-206ENST00000452162 FAM208AQ9UK61 1670 aaKnown RBP13.93□□□□□ -0.18
PKP4-206ENST00000452162 THSD7AQ9UPZ6 1657 aa13.93□□□□□ -0.18
PKP4-206ENST00000452162 WNK3Q9BYP7 1800 aa13.93□□□□□ -0.18
PKP4-206ENST00000452162 WDR63Q8IWG1 891 aa13.93□□□□□ -0.18
PKP4-206ENST00000452162 BARGINQ6ZT62 677 aa13.92□□□□□ -0.18
PKP4-206ENST00000452162 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.92□□□□□ -0.18
PKP4-206ENST00000452162 THRAP3Q9Y2W1 955 aaKnown RBP13.92□□□□□ -0.18
PKP4-206ENST00000452162 PLEKHF1Q96S99 279 aa13.91□□□□□ -0.18
PKP4-206ENST00000452162 NEUROD2Q15784 382 aa13.9□□□□□ -0.18
PKP4-206ENST00000452162 NBPF6Q5VWK0 638 aa13.9□□□□□ -0.18
PKP4-206ENST00000452162 NBPF4Q96M43 638 aa13.9□□□□□ -0.18
PKP4-206ENST00000452162 USHBP1Q8N6Y0 703 aa13.89□□□□□ -0.19
PKP4-206ENST00000452162 PARP4Q9UKK3 1724 aaKnown RBP13.89□□□□□ -0.19
PKP4-206ENST00000452162 FANCIQ9NVI1 1328 aa13.89□□□□□ -0.19
PKP4-206ENST00000452162 EIF4A2Q14240 407 aaKnown RBP13.89□□□□□ -0.19
PKP4-206ENST00000452162 U2SURPO15042 1029 aaKnown RBP13.88□□□□□ -0.19
PKP4-206ENST00000452162 DISP2A7MBM2 1401 aa13.88□□□□□ -0.19
PKP4-206ENST00000452162 DIAPH1O60610 1272 aaKnown RBP13.88□□□□□ -0.19
PKP4-206ENST00000452162 BCAR3O75815 825 aa13.88□□□□□ -0.19
PKP4-206ENST00000452162 KRT27Q7Z3Y8 459 aa13.87□□□□□ -0.19
PKP4-206ENST00000452162 LRRC37A3O60309 1634 aa13.87□□□□□ -0.19
PKP4-206ENST00000452162 FAM182BQ5T319 152 aa13.87□□□□□ -0.19
PKP4-206ENST00000452162 EYA1Q99502 592 aa13.86□□□□□ -0.19
PKP4-206ENST00000452162 IL2RBP14784 551 aa13.86□□□□□ -0.19
PKP4-206ENST00000452162 TMPOP42166 694 aaKnown RBP13.85□□□□□ -0.19
PKP4-206ENST00000452162 DDB1Q16531 1140 aa13.85□□□□□ -0.19
PKP4-206ENST00000452162 CDCA7Q9BWT1 371 aaPredicted RBP13.85□□□□□ -0.19
PKP4-206ENST00000452162 KDM2BQ8NHM5 1336 aa13.84□□□□□ -0.19
PKP4-206ENST00000452162 TRIM35Q9UPQ4 493 aa13.84□□□□□ -0.19
PKP4-206ENST00000452162 MAPK8IP3Q9UPT6 1336 aa13.84□□□□□ -0.19
PKP4-206ENST00000452162 MEGF6O75095 1541 aa13.84□□□□□ -0.19
PKP4-206ENST00000452162 SOCS7O14512 581 aa13.83□□□□□ -0.19
PKP4-206ENST00000452162 IL13P35225 146 aa13.83□□□□□ -0.19
PKP4-206ENST00000452162 MYH16Q9H6N6 1097 aa13.83□□□□□ -0.19
PKP4-206ENST00000452162 NCAPD2Q15021 1401 aa13.83□□□□□ -0.19
PKP4-206ENST00000452162 TCERG1O14776 1098 aaKnown RBP13.83□□□□□ -0.2
PKP4-206ENST00000452162 RARSP54136 660 aaKnown RBP13.83□□□□□ -0.2
PKP4-206ENST00000452162 PDE3AQ14432 1141 aa13.83□□□□□ -0.2
PKP4-206ENST00000452162 PNNQ9H307 717 aaKnown RBP13.83□□□□□ -0.2
PKP4-206ENST00000452162 KAT6BQ8WYB5 2073 aa13.83□□□□□ -0.2
PKP4-206ENST00000452162 RGPD1P0DJD0 1748 aa13.82□□□□□ -0.2
PKP4-206ENST00000452162 EXOC5O00471 708 aa13.82□□□□□ -0.2
PKP4-206ENST00000452162 FCHSD2O94868 740 aa13.82□□□□□ -0.2
PKP4-206ENST00000452162 IGSF1Q8N6C5 1336 aa13.82□□□□□ -0.2
PKP4-206ENST00000452162 RSPH6AQ9H0K4 717 aa13.82□□□□□ -0.2
PKP4-206ENST00000452162 TNS2Q63HR2 1409 aa13.81□□□□□ -0.2
PKP4-206ENST00000452162 SHANK3Q9BYB0 1731 aa13.81□□□□□ -0.2
PKP4-206ENST00000452162 IL16Q14005 1332 aa13.81□□□□□ -0.2
PKP4-206ENST00000452162 ERICH6Q7L0X2 663 aa13.81□□□□□ -0.2
PKP4-206ENST00000452162 MARCH10Q8NA82 808 aaPredicted RBP13.81□□□□□ -0.2
PKP4-206ENST00000452162 RAPGEF4Q8WZA2 1011 aa13.81□□□□□ -0.2
PKP4-206ENST00000452162 AEBP1Q8IUX7 1158 aa13.8□□□□□ -0.2
PKP4-206ENST00000452162 UPF1Q92900 1129 aaKnown RBP eCLIP13.8□□□□□ -0.2
PKP4-206ENST00000452162 OVOS2A0A0G2JMS6 1433 aa13.8□□□□□ -0.2
PKP4-206ENST00000452162 CENPQQ7L2Z9 268 aaPredicted RBP13.8□□□□□ -0.2
PKP4-206ENST00000452162 MS4A1P11836 297 aa13.79□□□□□ -0.2
PKP4-206ENST00000452162 TATP17735 454 aaPredicted RBP13.79□□□□□ -0.2
PKP4-206ENST00000452162 SBF2Q86WG5 1849 aa13.79□□□□□ -0.2
PKP4-206ENST00000452162 MSH5O43196 834 aa13.79□□□□□ -0.2
PKP4-206ENST00000452162 CT47B1P0C2W7 299 aaPredicted RBP13.79□□□□□ -0.2
PKP4-206ENST00000452162 RIPK4P57078 832 aa13.79□□□□□ -0.2
PKP4-206ENST00000452162 SULT6B1Q6IMI4 303 aa13.79□□□□□ -0.2
PKP4-206ENST00000452162 PRKAR2BP31323 418 aa13.78□□□□□ -0.2
PKP4-206ENST00000452162 ZCRB1Q8TBF4 217 aaKnown RBP13.78□□□□□ -0.2
PKP4-206ENST00000452162 FAM196AQ6ZSG2 479 aa13.78□□□□□ -0.2
PKP4-206ENST00000452162 DDX54Q8TDD1 881 aaKnown RBP13.78□□□□□ -0.2
PKP4-206ENST00000452162 TSR2Q969E8 191 aaKnown RBP13.78□□□□□ -0.2
PKP4-206ENST00000452162 PKD1L3Q7Z443 1732 aa13.77□□□□□ -0.2
PKP4-206ENST00000452162 HMOX1P09601 288 aa13.77□□□□□ -0.21
PKP4-206ENST00000452162 CANXP27824 592 aaKnown RBP13.76□□□□□ -0.21
PKP4-206ENST00000452162 PANK1Q8TE04 598 aa13.76□□□□□ -0.21
PKP4-206ENST00000452162 KDRP35968 1356 aa13.76□□□□□ -0.21
PKP4-206ENST00000452162 EXOSC9Q06265 439 aaKnown RBP13.75□□□□□ -0.21
PKP4-206ENST00000452162 NFE2L2Q16236 605 aa13.75□□□□□ -0.21
PKP4-206ENST00000452162 FRAT1Q92837 279 aaPredicted RBP13.75□□□□□ -0.21
PKP4-206ENST00000452162 TRIM37O94972 964 aa13.74□□□□□ -0.21
PKP4-206ENST00000452162 SKAP1Q86WV1 359 aa13.74□□□□□ -0.21
PKP4-206ENST00000452162 PHACTR3Q96KR7 559 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms