RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 KAT6BQ8WYB5 2073 aa17.28■□□□□ 0.36
CPSF4-208ENST00000452047 POLR3GLQ9BT43 218 aa17.27■□□□□ 0.36
CPSF4-208ENST00000452047 EMILIN1Q9Y6C2 1016 aa17.27■□□□□ 0.36
CPSF4-208ENST00000452047 USHBP1Q8N6Y0 703 aa17.26■□□□□ 0.35
CPSF4-208ENST00000452047 DDX54Q8TDD1 881 aaKnown RBP17.26■□□□□ 0.35
CPSF4-208ENST00000452047 NCAPD2Q15021 1401 aa17.26■□□□□ 0.35
CPSF4-208ENST00000452047 ZCRB1Q8TBF4 217 aaKnown RBP17.25■□□□□ 0.35
CPSF4-208ENST00000452047 PKD1L3Q7Z443 1732 aa17.24■□□□□ 0.35
CPSF4-208ENST00000452047 NSD2O96028 1365 aa17.23■□□□□ 0.35
CPSF4-208ENST00000452047 LY75O60449 1722 aa17.22■□□□□ 0.35
CPSF4-208ENST00000452047 RAPGEF4Q8WZA2 1011 aa17.22■□□□□ 0.35
CPSF4-208ENST00000452047 PANK3Q9H999 370 aa17.22■□□□□ 0.35
CPSF4-208ENST00000452047 WASHC2AQ641Q2 1341 aa17.21■□□□□ 0.35
CPSF4-208ENST00000452047 PDGFDQ9GZP0 370 aaPredicted RBP17.21■□□□□ 0.35
CPSF4-208ENST00000452047 POLKQ9UBT6 870 aa17.21■□□□□ 0.35
CPSF4-208ENST00000452047 PPM1GO15355 546 aaPredicted RBP17.2■□□□□ 0.34
CPSF4-208ENST00000452047 SLC15A2Q16348 729 aa17.2■□□□□ 0.34
CPSF4-208ENST00000452047 SPON1Q9HCB6 807 aa17.2■□□□□ 0.34
CPSF4-208ENST00000452047 TOGARAM1Q9Y4F4 1720 aa17.19■□□□□ 0.34
CPSF4-208ENST00000452047 TATP17735 454 aaPredicted RBP17.19■□□□□ 0.34
CPSF4-208ENST00000452047 PRIM1P49642 420 aaKnown RBP17.19■□□□□ 0.34
CPSF4-208ENST00000452047 LRRC4BQ9NT99 713 aa17.19■□□□□ 0.34
CPSF4-208ENST00000452047 STK32BQ9NY57 414 aa17.19■□□□□ 0.34
CPSF4-208ENST00000452047 QSER1Q2KHR3 1735 aa17.18■□□□□ 0.34
CPSF4-208ENST00000452047 PCDH11XQ9BZA7 1347 aa17.18■□□□□ 0.34
CPSF4-208ENST00000452047 PCDH11YQ9BZA8 1340 aa17.18■□□□□ 0.34
CPSF4-208ENST00000452047 SYTL4Q96C24 671 aaPredicted RBP17.17■□□□□ 0.34
CPSF4-208ENST00000452047 TUBGCP6Q96RT7 1819 aa17.17■□□□□ 0.34
CPSF4-208ENST00000452047 TNNT2P45379 298 aaPredicted RBP17.16■□□□□ 0.34
CPSF4-208ENST00000452047 EYA1Q99502 592 aa17.16■□□□□ 0.34
CPSF4-208ENST00000452047 ITGB4P16144 1822 aa17.16■□□□□ 0.34
CPSF4-208ENST00000452047 KIF7Q2M1P5 1343 aa17.16■□□□□ 0.34
CPSF4-208ENST00000452047 CYP27B1O15528 508 aa17.15■□□□□ 0.34
CPSF4-208ENST00000452047 ZNF827Q17R98 1081 aa17.15■□□□□ 0.34
CPSF4-208ENST00000452047 SLC27A3Q5K4L6 730 aa17.15■□□□□ 0.34
CPSF4-208ENST00000452047 EIF4A2Q14240 407 aaKnown RBP17.14■□□□□ 0.33
CPSF4-208ENST00000452047 ZBTB7AO95365 584 aa17.13■□□□□ 0.33
CPSF4-208ENST00000452047 PTGER2P43116 358 aa17.12■□□□□ 0.33
CPSF4-208ENST00000452047 AKT1S1Q96B36 256 aa17.12■□□□□ 0.33
CPSF4-208ENST00000452047 PLEKHG2Q9H7P9 1386 aa17.12■□□□□ 0.33
CPSF4-208ENST00000452047 PPP1R1BQ9UD71 204 aaPredicted RBP17.11■□□□□ 0.33
CPSF4-208ENST00000452047 IGSF1Q8N6C5 1336 aa17.11■□□□□ 0.33
CPSF4-208ENST00000452047 UTRNP46939 3433 aa17.11■□□□□ 0.33
CPSF4-208ENST00000452047 C5P01031 1676 aa17.1■□□□□ 0.33
CPSF4-208ENST00000452047 COL24A1Q17RW2 1714 aa17.1■□□□□ 0.33
CPSF4-208ENST00000452047 TAF1LQ8IZX4 1826 aa17.1■□□□□ 0.33
CPSF4-208ENST00000452047 KCNQ4P56696 695 aa17.1■□□□□ 0.33
CPSF4-208ENST00000452047 NKX1-1Q15270 411 aaPredicted RBP17.1■□□□□ 0.33
CPSF4-208ENST00000452047 AMER1Q5JTC6 1135 aaPredicted RBP17.1■□□□□ 0.33
CPSF4-208ENST00000452047 MTFR1LQ9H019 292 aa17.1■□□□□ 0.33
CPSF4-208ENST00000452047 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.1■□□□□ 0.33
CPSF4-208ENST00000452047 KNSTRNQ9Y448 316 aa17.1■□□□□ 0.33
CPSF4-208ENST00000452047 MORC1Q86VD1 984 aa17.09■□□□□ 0.33
CPSF4-208ENST00000452047 SGIP1Q9BQI5 828 aa17.09■□□□□ 0.33
CPSF4-208ENST00000452047 SPG7Q9UQ90 795 aa17.09■□□□□ 0.33
CPSF4-208ENST00000452047 ATF5Q9Y2D1 282 aaPredicted RBP17.09■□□□□ 0.33
CPSF4-208ENST00000452047 CCNL1Q9UK58 526 aaPredicted RBP17.08■□□□□ 0.32
CPSF4-208ENST00000452047 PNPLA7Q6ZV29 1317 aa17.07■□□□□ 0.32
CPSF4-208ENST00000452047 PALLDQ8WX93 1383 aa17.06■□□□□ 0.32
CPSF4-208ENST00000452047 PER1O15534 1290 aaPredicted RBP17.06■□□□□ 0.32
CPSF4-208ENST00000452047 MPRIPQ6WCQ1 1025 aa17.06■□□□□ 0.32
CPSF4-208ENST00000452047 PHKG2P15735 406 aa17.05■□□□□ 0.32
CPSF4-208ENST00000452047 GOLGB1Q14789 3259 aaKnown RBP17.05■□□□□ 0.32
CPSF4-208ENST00000452047 IFNL2Q8IZJ0 200 aa17.04■□□□□ 0.32
CPSF4-208ENST00000452047 PIGBQ92521 554 aa17.04■□□□□ 0.32
CPSF4-208ENST00000452047 TFCP2L1Q9NZI6 479 aa17.04■□□□□ 0.32
CPSF4-208ENST00000452047 SLC16A10Q8TF71 515 aa17.03■□□□□ 0.32
CPSF4-208ENST00000452047 C4BP0C0L5 1744 aa17.03■□□□□ 0.32
CPSF4-208ENST00000452047 KDRP35968 1356 aa17.02■□□□□ 0.32
CPSF4-208ENST00000452047 AEBP1Q8IUX7 1158 aa17.01■□□□□ 0.31
CPSF4-208ENST00000452047 SMARCC1Q92922 1105 aaPredicted RBP17.01■□□□□ 0.31
CPSF4-208ENST00000452047 UBR3Q6ZT12 1888 aa17.01■□□□□ 0.31
CPSF4-208ENST00000452047 IL13P35225 146 aa17■□□□□ 0.31
CPSF4-208ENST00000452047 FHDC1Q9C0D6 1143 aaPredicted RBP17■□□□□ 0.31
CPSF4-208ENST00000452047 MAP3K5Q99683 1374 aa17■□□□□ 0.31
CPSF4-208ENST00000452047 NPC1L1Q9UHC9 1359 aa17■□□□□ 0.31
CPSF4-208ENST00000452047 KDM6AO15550 1401 aaPredicted RBP16.99■□□□□ 0.31
CPSF4-208ENST00000452047 ARXQ96QS3 562 aa16.99■□□□□ 0.31
CPSF4-208ENST00000452047 TMOD3Q9NYL9 352 aa16.99■□□□□ 0.31
CPSF4-208ENST00000452047 ZNF831Q5JPB2 1677 aa16.98■□□□□ 0.31
CPSF4-208ENST00000452047 MTHFSP49914 203 aa16.98■□□□□ 0.31
CPSF4-208ENST00000452047 SYT17Q9BSW7 474 aa16.98■□□□□ 0.31
CPSF4-208ENST00000452047 AMOTQ4VCS5 1084 aa16.97■□□□□ 0.31
CPSF4-208ENST00000452047 PLEKHO1Q53GL0 409 aaPredicted RBP16.97■□□□□ 0.31
CPSF4-208ENST00000452047 CC2D1BQ5T0F9 858 aaKnown RBP16.97■□□□□ 0.31
CPSF4-208ENST00000452047 SULT6B1Q6IMI4 303 aa16.97■□□□□ 0.31
CPSF4-208ENST00000452047 COL23A1Q86Y22 540 aaPredicted RBP16.97■□□□□ 0.31
CPSF4-208ENST00000452047 ASAP1Q9ULH1 1129 aa16.97■□□□□ 0.31
CPSF4-208ENST00000452047 LOC102724428A0A0B4J2F2 783 aa16.96■□□□□ 0.31
CPSF4-208ENST00000452047 HMGB2P26583 209 aaKnown RBP16.96■□□□□ 0.31
CPSF4-208ENST00000452047 SIK1P57059 783 aa16.96■□□□□ 0.31
CPSF4-208ENST00000452047 ZNF530Q6P9A1 599 aaPredicted RBP16.96■□□□□ 0.31
CPSF4-208ENST00000452047 DCAF5Q96JK2 942 aa16.96■□□□□ 0.31
CPSF4-208ENST00000452047 COL3A1P02461 1466 aaPredicted RBP16.96■□□□□ 0.31
CPSF4-208ENST00000452047 SCN11AQ9UI33 1791 aa16.96■□□□□ 0.31
CPSF4-208ENST00000452047 ERVV-2B6SEH9 535 aa16.95■□□□□ 0.3
CPSF4-208ENST00000452047 HSP90AB1P08238 724 aaKnown RBP16.95■□□□□ 0.3
CPSF4-208ENST00000452047 AMIGO3Q86WK7 504 aa16.95■□□□□ 0.3
CPSF4-208ENST00000452047 ATG3Q9NT62 314 aa16.95■□□□□ 0.3
CPSF4-208ENST00000452047 VIRMAQ69YN4 1812 aaKnown RBP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 159.6 ms