RNA–Protein interactions for RNA: ENST00000448520.5

PDLIM2-213, Transcript of PDZ and LIM domain 2, humanhuman

TSL 3

Gene PDLIM2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-213ENST00000448520 GGNBP2Q9H3C7 697 aa19.06■□□□□ 0.64
PDLIM2-213ENST00000448520 RRS1Q15050 365 aaKnown RBP19.05■□□□□ 0.64
PDLIM2-213ENST00000448520 AKT1S1Q96B36 256 aa19.05■□□□□ 0.64
PDLIM2-213ENST00000448520 SYTL4Q96C24 671 aaPredicted RBP19.05■□□□□ 0.64
PDLIM2-213ENST00000448520 ARXQ96QS3 562 aa19.05■□□□□ 0.64
PDLIM2-213ENST00000448520 HMGB2P26583 209 aaKnown RBP19.04■□□□□ 0.64
PDLIM2-213ENST00000448520 NBPF6Q5VWK0 638 aa19.04■□□□□ 0.64
PDLIM2-213ENST00000448520 NBPF4Q96M43 638 aa19.04■□□□□ 0.64
PDLIM2-213ENST00000448520 HSPA5P11021 654 aaKnown RBP19.03■□□□□ 0.64
PDLIM2-213ENST00000448520 ZNF827Q17R98 1081 aa19.03■□□□□ 0.64
PDLIM2-213ENST00000448520 RAPGEF4Q8WZA2 1011 aa19.03■□□□□ 0.64
PDLIM2-213ENST00000448520 SMG6Q86US8 1419 aaKnown RBP19.02■□□□□ 0.64
PDLIM2-213ENST00000448520 KIF24Q5T7B8 1368 aa19.02■□□□□ 0.64
PDLIM2-213ENST00000448520 MYOM1P52179 1685 aa19.01■□□□□ 0.63
PDLIM2-213ENST00000448520 PAPPAQ13219 1627 aa19.01■□□□□ 0.63
PDLIM2-213ENST00000448520 TATP17735 454 aaPredicted RBP19.01■□□□□ 0.63
PDLIM2-213ENST00000448520 TFCP2L1Q9NZI6 479 aa19.01■□□□□ 0.63
PDLIM2-213ENST00000448520 INSRP06213 1382 aa19■□□□□ 0.63
PDLIM2-213ENST00000448520 RGPD2P0DJD1 1756 aa19■□□□□ 0.63
PDLIM2-213ENST00000448520 MAP3K5Q99683 1374 aa18.99■□□□□ 0.63
PDLIM2-213ENST00000448520 POLD1P28340 1107 aa18.99■□□□□ 0.63
PDLIM2-213ENST00000448520 EIF4G2P78344 907 aaKnown RBP eCLIP18.99■□□□□ 0.63
PDLIM2-213ENST00000448520 HSP90AB2PQ58FF8 381 aa18.99■□□□□ 0.63
PDLIM2-213ENST00000448520 MEGF6O75095 1541 aa18.98■□□□□ 0.63
PDLIM2-213ENST00000448520 FLT4P35916 1363 aa18.97■□□□□ 0.63
PDLIM2-213ENST00000448520 USHBP1Q8N6Y0 703 aa18.97■□□□□ 0.63
PDLIM2-213ENST00000448520 CARD14Q9BXL6 1004 aa18.97■□□□□ 0.63
PDLIM2-213ENST00000448520 CCNL1Q9UK58 526 aaPredicted RBP18.97■□□□□ 0.63
PDLIM2-213ENST00000448520 PNPLA7Q6ZV29 1317 aa18.97■□□□□ 0.63
PDLIM2-213ENST00000448520 NSD2O96028 1365 aa18.96■□□□□ 0.63
PDLIM2-213ENST00000448520 QSER1Q2KHR3 1735 aa18.96■□□□□ 0.63
PDLIM2-213ENST00000448520 KCNQ4P56696 695 aa18.95■□□□□ 0.62
PDLIM2-213ENST00000448520 PCDH11XQ9BZA7 1347 aa18.95■□□□□ 0.62
PDLIM2-213ENST00000448520 PCDH11YQ9BZA8 1340 aa18.95■□□□□ 0.62
PDLIM2-213ENST00000448520 LY75O60449 1722 aa18.94■□□□□ 0.62
PDLIM2-213ENST00000448520 CHD4Q14839 1912 aa18.94■□□□□ 0.62
PDLIM2-213ENST00000448520 DOT1LQ8TEK3 1739 aa18.93■□□□□ 0.62
PDLIM2-213ENST00000448520 SHANK3Q9BYB0 1731 aa18.93■□□□□ 0.62
PDLIM2-213ENST00000448520 KIF20BQ96Q89 1820 aa18.92■□□□□ 0.62
PDLIM2-213ENST00000448520 UTRNP46939 3433 aa18.91■□□□□ 0.62
PDLIM2-213ENST00000448520 GPR162Q16538 588 aa18.91■□□□□ 0.62
PDLIM2-213ENST00000448520 NSD3Q9BZ95 1437 aa18.91■□□□□ 0.62
PDLIM2-213ENST00000448520 PPM1GO15355 546 aaPredicted RBP18.9■□□□□ 0.62
PDLIM2-213ENST00000448520 ZNF784Q8NCA9 323 aaPredicted RBP18.9■□□□□ 0.62
PDLIM2-213ENST00000448520 FLAD1Q8NFF5 587 aa18.9■□□□□ 0.62
PDLIM2-213ENST00000448520 SMARCC1Q92922 1105 aaPredicted RBP18.9■□□□□ 0.62
PDLIM2-213ENST00000448520 EMILIN1Q9Y6C2 1016 aa18.9■□□□□ 0.62
PDLIM2-213ENST00000448520 WASHC2AQ641Q2 1341 aa18.9■□□□□ 0.62
PDLIM2-213ENST00000448520 CYP27B1O15528 508 aa18.89■□□□□ 0.61
PDLIM2-213ENST00000448520 MSH5O43196 834 aa18.89■□□□□ 0.61
PDLIM2-213ENST00000448520 MPRIPQ6WCQ1 1025 aa18.89■□□□□ 0.61
PDLIM2-213ENST00000448520 COL23A1Q86Y22 540 aaPredicted RBP18.89■□□□□ 0.61
PDLIM2-213ENST00000448520 SPG7Q9UQ90 795 aa18.89■□□□□ 0.61
PDLIM2-213ENST00000448520 COL24A1Q17RW2 1714 aa18.88■□□□□ 0.61
PDLIM2-213ENST00000448520 NKX1-1Q15270 411 aaPredicted RBP18.88■□□□□ 0.61
PDLIM2-213ENST00000448520 KLHL34Q8N239 644 aa18.88■□□□□ 0.61
PDLIM2-213ENST00000448520 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.88■□□□□ 0.61
PDLIM2-213ENST00000448520 MAP2P11137 1827 aaKnown RBP18.86■□□□□ 0.61
PDLIM2-213ENST00000448520 TUBGCP6Q96RT7 1819 aa18.86■□□□□ 0.61
PDLIM2-213ENST00000448520 PALLDQ8WX93 1383 aa18.85■□□□□ 0.61
PDLIM2-213ENST00000448520 EYA1Q99502 592 aa18.85■□□□□ 0.61
PDLIM2-213ENST00000448520 POLKQ9UBT6 870 aa18.85■□□□□ 0.61
PDLIM2-213ENST00000448520 NCAPD2Q15021 1401 aa18.83■□□□□ 0.61
PDLIM2-213ENST00000448520 PIGBQ92521 554 aa18.83■□□□□ 0.6
PDLIM2-213ENST00000448520 GRIN3BO60391 1043 aa18.82■□□□□ 0.6
PDLIM2-213ENST00000448520 POLR3GLQ9BT43 218 aa18.82■□□□□ 0.6
PDLIM2-213ENST00000448520 ITGB4P16144 1822 aa18.81■□□□□ 0.6
PDLIM2-213ENST00000448520 IFNL2Q8IZJ0 200 aa18.81■□□□□ 0.6
PDLIM2-213ENST00000448520 PELP1Q8IZL8 1130 aaKnown RBP18.81■□□□□ 0.6
PDLIM2-213ENST00000448520 KIF7Q2M1P5 1343 aa18.8■□□□□ 0.6
PDLIM2-213ENST00000448520 ZNF316A6NFI3 1004 aaPredicted RBP18.8■□□□□ 0.6
PDLIM2-213ENST00000448520 NLGN2Q8NFZ4 835 aa18.8■□□□□ 0.6
PDLIM2-213ENST00000448520 AK7Q96M32 723 aa18.8■□□□□ 0.6
PDLIM2-213ENST00000448520 TMOD3Q9NYL9 352 aa18.8■□□□□ 0.6
PDLIM2-213ENST00000448520 CD2APQ9Y5K6 639 aa18.8■□□□□ 0.6
PDLIM2-213ENST00000448520 PKD1L3Q7Z443 1732 aa18.8■□□□□ 0.6
PDLIM2-213ENST00000448520 TAF1LQ8IZX4 1826 aa18.79■□□□□ 0.6
PDLIM2-213ENST00000448520 LOC102724428A0A0B4J2F2 783 aa18.79■□□□□ 0.6
PDLIM2-213ENST00000448520 SIK1P57059 783 aa18.79■□□□□ 0.6
PDLIM2-213ENST00000448520 MSL1Q68DK7 614 aa18.79■□□□□ 0.6
PDLIM2-213ENST00000448520 C5P01031 1676 aa18.79■□□□□ 0.6
PDLIM2-213ENST00000448520 PHKG2P15735 406 aa18.78■□□□□ 0.6
PDLIM2-213ENST00000448520 PLEKHG2Q9H7P9 1386 aa18.78■□□□□ 0.6
PDLIM2-213ENST00000448520 ANKRD26Q9UPS8 1709 aa18.77■□□□□ 0.6
PDLIM2-213ENST00000448520 TNNT2P45379 298 aaPredicted RBP18.77■□□□□ 0.6
PDLIM2-213ENST00000448520 EIF4A2Q14240 407 aaKnown RBP18.77■□□□□ 0.6
PDLIM2-213ENST00000448520 PANK3Q9H999 370 aa18.77■□□□□ 0.6
PDLIM2-213ENST00000448520 SSFA2P28290 1259 aa18.76■□□□□ 0.59
PDLIM2-213ENST00000448520 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.75■□□□□ 0.59
PDLIM2-213ENST00000448520 HSP90AB1P08238 724 aaKnown RBP18.75■□□□□ 0.59
PDLIM2-213ENST00000448520 ASAP1Q9ULH1 1129 aa18.75■□□□□ 0.59
PDLIM2-213ENST00000448520 ATP6V1AP38606 617 aa18.74■□□□□ 0.59
PDLIM2-213ENST00000448520 C1QTNF8P60827 252 aa18.74■□□□□ 0.59
PDLIM2-213ENST00000448520 C4BP0C0L5 1744 aa18.74■□□□□ 0.59
PDLIM2-213ENST00000448520 TOGARAM1Q9Y4F4 1720 aa18.74■□□□□ 0.59
PDLIM2-213ENST00000448520 GOLGB1Q14789 3259 aaKnown RBP18.73■□□□□ 0.59
PDLIM2-213ENST00000448520 ERVV-2B6SEH9 535 aa18.73■□□□□ 0.59
PDLIM2-213ENST00000448520 YBX3P16989 372 aaKnown RBP eCLIP18.73■□□□□ 0.59
PDLIM2-213ENST00000448520 PLEKHO1Q53GL0 409 aaPredicted RBP18.73■□□□□ 0.59
PDLIM2-213ENST00000448520 PHF14O94880 888 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 187.2 ms