RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 UGGT2Q9NYU1 1516 aa9.79□□□□□ -0.84
USP49-205ENST00000448078 ARID3CA6NKF2 412 aa9.79□□□□□ -0.84
USP49-205ENST00000448078 C4orf48Q5BLP8 95 aa9.79□□□□□ -0.84
USP49-205ENST00000448078 TRAF7Q6Q0C0 670 aa9.79□□□□□ -0.84
USP49-205ENST00000448078 ILDR2Q71H61 639 aa9.79□□□□□ -0.84
USP49-205ENST00000448078 WWC1Q8IX03 1113 aa9.79□□□□□ -0.84
USP49-205ENST00000448078 ADAM32Q8TC27 787 aa9.79□□□□□ -0.84
USP49-205ENST00000448078 GJD4Q96KN9 370 aaPredicted RBP9.79□□□□□ -0.84
USP49-205ENST00000448078 PCDHB9Q9Y5E1 797 aa9.79□□□□□ -0.84
USP49-205ENST00000448078 CFAP43Q8NDM7 1665 aa9.78□□□□□ -0.84
USP49-205ENST00000448078 PLEKHD1A6NEE1 506 aa9.78□□□□□ -0.84
USP49-205ENST00000448078 ZBBXA8MT70 800 aa9.78□□□□□ -0.84
USP49-205ENST00000448078 UBTFP17480 764 aaKnown RBP9.78□□□□□ -0.84
USP49-205ENST00000448078 RAB15P59190 212 aa9.78□□□□□ -0.84
USP49-205ENST00000448078 FLIIQ13045 1269 aa9.78□□□□□ -0.84
USP49-205ENST00000448078 ERFEQ4G0M1 354 aa9.78□□□□□ -0.84
USP49-205ENST00000448078 TBC1D2BQ9UPU7 963 aa9.78□□□□□ -0.84
USP49-205ENST00000448078 GPSM3Q9Y4H4 160 aa9.78□□□□□ -0.84
USP49-205ENST00000448078 PCF11O94913 1555 aaKnown RBP9.78□□□□□ -0.84
USP49-205ENST00000448078 SIAH2O43255 324 aa9.77□□□□□ -0.85
USP49-205ENST00000448078 SMPD1P17405 629 aa9.77□□□□□ -0.85
USP49-205ENST00000448078 FSHRP23945 695 aa9.77□□□□□ -0.85
USP49-205ENST00000448078 NNTQ13423 1086 aa9.77□□□□□ -0.85
USP49-205ENST00000448078 AXIN1O15169 862 aa9.76□□□□□ -0.85
USP49-205ENST00000448078 ADH1CP00326 375 aa9.76□□□□□ -0.85
USP49-205ENST00000448078 MLECQ14165 292 aa9.76□□□□□ -0.85
USP49-205ENST00000448078 MCM6Q14566 821 aa9.76□□□□□ -0.85
USP49-205ENST00000448078 SH3RF1Q7Z6J0 888 aa9.76□□□□□ -0.85
USP49-205ENST00000448078 HPS1Q92902 700 aa9.76□□□□□ -0.85
USP49-205ENST00000448078 GDPD2Q9HCC8 539 aa9.76□□□□□ -0.85
USP49-205ENST00000448078 NBPF20Q3BBV1 942 aa9.75□□□□□ -0.85
USP49-205ENST00000448078 ESF1Q9H501 851 aaKnown RBP9.75□□□□□ -0.85
USP49-205ENST00000448078 CDV3Q9UKY7 258 aaKnown RBP9.75□□□□□ -0.85
USP49-205ENST00000448078 KIF21BO75037 1637 aa9.74□□□□□ -0.85
USP49-205ENST00000448078 NEO1Q92859 1461 aa9.74□□□□□ -0.85
USP49-205ENST00000448078 ST8SIA5O15466 376 aa9.73□□□□□ -0.85
USP49-205ENST00000448078 FBXO45P0C2W1 286 aa9.73□□□□□ -0.85
USP49-205ENST00000448078 MYT1Q01538 1121 aa9.73□□□□□ -0.85
USP49-205ENST00000448078 NR5A1Q13285 461 aa9.73□□□□□ -0.85
USP49-205ENST00000448078 ZNF592Q92610 1267 aa9.73□□□□□ -0.85
USP49-205ENST00000448078 KIAA0556O60303 1618 aa9.72□□□□□ -0.85
USP49-205ENST00000448078 ADAMTSL3P82987 1691 aa9.72□□□□□ -0.85
USP49-205ENST00000448078 WDR4P57081 412 aaKnown RBP9.72□□□□□ -0.85
USP49-205ENST00000448078 NR1H3Q13133 447 aa9.72□□□□□ -0.85
USP49-205ENST00000448078 CTC1Q2NKJ3 1217 aa9.72□□□□□ -0.85
USP49-205ENST00000448078 KCTD15Q96SI1 283 aaPredicted RBP9.72□□□□□ -0.85
USP49-205ENST00000448078 C1QTNF2Q9BXJ5 285 aa9.72□□□□□ -0.85
USP49-205ENST00000448078 AKNAQ7Z591 1439 aa9.72□□□□□ -0.85
USP49-205ENST00000448078 CAPN5O15484 640 aaPredicted RBP9.71□□□□□ -0.86
USP49-205ENST00000448078 TRMT44Q8IYL2 757 aaKnown RBP9.71□□□□□ -0.86
USP49-205ENST00000448078 CDK15Q96Q40 435 aa9.71□□□□□ -0.86
USP49-205ENST00000448078 DENND4BO75064 1496 aaPredicted RBP9.71□□□□□ -0.86
USP49-205ENST00000448078 EIF4G2P78344 907 aaKnown RBP eCLIP9.7□□□□□ -0.86
USP49-205ENST00000448078 CCDC116Q8IYX3 515 aa9.7□□□□□ -0.86
USP49-205ENST00000448078 MPNDQ8N594 471 aa9.7□□□□□ -0.86
USP49-205ENST00000448078 YEATS2Q9ULM3 1422 aa9.7□□□□□ -0.86
USP49-205ENST00000448078 FANCAO15360 1455 aa9.7□□□□□ -0.86
USP49-205ENST00000448078 DHX9Q08211 1270 aaKnown RBP9.69□□□□□ -0.86
USP49-205ENST00000448078 MAP4K5Q9Y4K4 846 aa9.69□□□□□ -0.86
USP49-205ENST00000448078 ATP10BO94823 1461 aa9.68□□□□□ -0.86
USP49-205ENST00000448078 ZIC2O95409 532 aaPredicted RBP9.68□□□□□ -0.86
USP49-205ENST00000448078 VAC14Q08AM6 782 aa9.68□□□□□ -0.86
USP49-205ENST00000448078 AAASQ9NRG9 546 aa9.68□□□□□ -0.86
USP49-205ENST00000448078 PGPEP1Q9NXJ5 209 aa9.68□□□□□ -0.86
USP49-205ENST00000448078 UPP2O95045 317 aa9.67□□□□□ -0.86
USP49-205ENST00000448078 AVPP01185 164 aa9.67□□□□□ -0.86
USP49-205ENST00000448078 WASHC4Q2M389 1173 aa9.67□□□□□ -0.86
USP49-205ENST00000448078 TRIM52Q96A61 297 aa9.67□□□□□ -0.86
USP49-205ENST00000448078 OCSTAMPQ9BR26 566 aa9.67□□□□□ -0.86
USP49-205ENST00000448078 COG6Q9Y2V7 657 aa9.67□□□□□ -0.86
USP49-205ENST00000448078 EMILIN1Q9Y6C2 1016 aa9.67□□□□□ -0.86
USP49-205ENST00000448078 ABCA8O94911 1581 aa9.67□□□□□ -0.86
USP49-205ENST00000448078 BCORL1Q5H9F3 1711 aa9.66□□□□□ -0.86
USP49-205ENST00000448078 GRM5P41594 1212 aa9.66□□□□□ -0.86
USP49-205ENST00000448078 MCCD1P59942 119 aaPredicted RBP9.66□□□□□ -0.86
USP49-205ENST00000448078 MADDQ8WXG6 1647 aa9.66□□□□□ -0.86
USP49-205ENST00000448078 NR3C2P08235 984 aa9.65□□□□□ -0.86
USP49-205ENST00000448078 SEMA3FQ13275 785 aa9.65□□□□□ -0.86
USP49-205ENST00000448078 EFCAB2Q5VUJ9 269 aa9.65□□□□□ -0.86
USP49-205ENST00000448078 POM121Q96HA1 1249 aa9.65□□□□□ -0.86
USP49-205ENST00000448078 MAGI2Q86UL8 1455 aa9.65□□□□□ -0.87
USP49-205ENST00000448078 UBAP1LF5GYI3 381 aa9.64□□□□□ -0.87
USP49-205ENST00000448078 CEBPAP49715 358 aaPredicted RBP9.64□□□□□ -0.87
USP49-205ENST00000448078 SCARF1Q14162 830 aa9.64□□□□□ -0.87
USP49-205ENST00000448078 INTS6LQ5JSJ4 861 aaKnown RBP9.64□□□□□ -0.87
USP49-205ENST00000448078 PPP1R26Q5T8A7 1209 aaPredicted RBP9.64□□□□□ -0.87
USP49-205ENST00000448078 RNF20Q5VTR2 975 aa9.64□□□□□ -0.87
USP49-205ENST00000448078 ITPKCQ96DU7 683 aa9.64□□□□□ -0.87
USP49-205ENST00000448078 ZFAND3Q9H8U3 227 aa9.64□□□□□ -0.87
USP49-205ENST00000448078 CDK11AQ9UQ88 783 aaPredicted RBP9.64□□□□□ -0.87
USP49-205ENST00000448078 FHOD3Q2V2M9 1422 aa9.64□□□□□ -0.87
USP49-205ENST00000448078 BMP1P13497 986 aa9.63□□□□□ -0.87
USP49-205ENST00000448078 ZNF787Q6DD87 383 aa9.63□□□□□ -0.87
USP49-205ENST00000448078 UHRF1BP1Q6BDS2 1440 aa9.63□□□□□ -0.87
USP49-205ENST00000448078 GIGYF1O75420 1035 aaPredicted RBP9.62□□□□□ -0.87
USP49-205ENST00000448078 TIMP2P16035 220 aa9.62□□□□□ -0.87
USP49-205ENST00000448078 RANGAP1P46060 587 aaPredicted RBP9.62□□□□□ -0.87
USP49-205ENST00000448078 ABCA9Q8IUA7 1624 aa9.62□□□□□ -0.87
USP49-205ENST00000448078 RIMS1Q86UR5 1692 aaKnown RBP9.61□□□□□ -0.87
USP49-205ENST00000448078 SMCPP49901 116 aaPredicted RBP9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms