RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 TMF1P82094 1093 aa10.88□□□□□ -0.67
CD44-211ENST00000442151 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.88□□□□□ -0.67
CD44-211ENST00000442151 COLQQ9Y215 455 aaPredicted RBP10.88□□□□□ -0.67
CD44-211ENST00000442151 EZH2Q15910 746 aaKnown RBP10.88□□□□□ -0.67
CD44-211ENST00000442151 LMO7Q8WWI1 1683 aa10.88□□□□□ -0.67
CD44-211ENST00000442151 PLSCR1O15162 318 aa10.87□□□□□ -0.67
CD44-211ENST00000442151 SOX12O15370 315 aa10.87□□□□□ -0.67
CD44-211ENST00000442151 IER5LQ5T953 404 aa10.87□□□□□ -0.67
CD44-211ENST00000442151 BCL11BQ9C0K0 894 aaPredicted RBP10.87□□□□□ -0.67
CD44-211ENST00000442151 SLC12A5Q9H2X9 1139 aa10.87□□□□□ -0.67
CD44-211ENST00000442151 OVOS2A0A0G2JMS6 1433 aa10.87□□□□□ -0.67
CD44-211ENST00000442151 OVOS2A0A0J9YW53 1432 aa10.87□□□□□ -0.67
CD44-211ENST00000442151 OVOS2Q6IE36 1432 aa10.87□□□□□ -0.67
CD44-211ENST00000442151 EDC4Q6P2E9 1401 aaKnown RBP10.87□□□□□ -0.67
CD44-211ENST00000442151 ABCC6O95255 1503 aa10.87□□□□□ -0.67
CD44-211ENST00000442151 AKAP12Q02952 1782 aa10.86□□□□□ -0.67
CD44-211ENST00000442151 CLSPNQ9HAW4 1339 aa10.86□□□□□ -0.67
CD44-211ENST00000442151 HMGB2P26583 209 aaKnown RBP10.86□□□□□ -0.67
CD44-211ENST00000442151 KIF12Q96FN5 646 aa10.86□□□□□ -0.67
CD44-211ENST00000442151 R3HDM1Q15032 1099 aaKnown RBP10.86□□□□□ -0.67
CD44-211ENST00000442151 COG3Q96JB2 828 aa10.86□□□□□ -0.67
CD44-211ENST00000442151 ST20-MTHFSA0A0A6YYL1 179 aa10.85□□□□□ -0.67
CD44-211ENST00000442151 PSDA5PKW4 1024 aaPredicted RBP10.85□□□□□ -0.67
CD44-211ENST00000442151 AXIN2Q9Y2T1 843 aa10.85□□□□□ -0.67
CD44-211ENST00000442151 NLRP2Q9NX02 1062 aa10.84□□□□□ -0.67
CD44-211ENST00000442151 BCL9O00512 1426 aa10.84□□□□□ -0.67
CD44-211ENST00000442151 PARP4Q9UKK3 1724 aaKnown RBP10.84□□□□□ -0.67
CD44-211ENST00000442151 PIK3C2AO00443 1686 aa10.84□□□□□ -0.67
CD44-211ENST00000442151 IL2RBP14784 551 aa10.83□□□□□ -0.68
CD44-211ENST00000442151 NME9Q86XW9 330 aa10.83□□□□□ -0.68
CD44-211ENST00000442151 IP6K1Q92551 441 aa10.83□□□□□ -0.68
CD44-211ENST00000442151 SNPHO15079 494 aa10.82□□□□□ -0.68
CD44-211ENST00000442151 AMPHP49418 695 aa10.82□□□□□ -0.68
CD44-211ENST00000442151 ANKRD24Q8TF21 1146 aa10.82□□□□□ -0.68
CD44-211ENST00000442151 TSPYL2Q9H2G4 693 aaPredicted RBP10.82□□□□□ -0.68
CD44-211ENST00000442151 TESK2Q96S53 571 aa10.81□□□□□ -0.68
CD44-211ENST00000442151 COL18A1P39060 1754 aa10.81□□□□□ -0.68
CD44-211ENST00000442151 MON2Q7Z3U7 1717 aa10.81□□□□□ -0.68
CD44-211ENST00000442151 LRP5O75197 1615 aa10.81□□□□□ -0.68
CD44-211ENST00000442151 MARCH10Q8NA82 808 aaPredicted RBP10.81□□□□□ -0.68
CD44-211ENST00000442151 SPON1Q9HCB6 807 aa10.81□□□□□ -0.68
CD44-211ENST00000442151 ERBB3P21860 1342 aa10.8□□□□□ -0.68
CD44-211ENST00000442151 TNS1Q9HBL0 1735 aaKnown RBP10.8□□□□□ -0.68
CD44-211ENST00000442151 PPP1R1BQ9UD71 204 aaPredicted RBP10.8□□□□□ -0.68
CD44-211ENST00000442151 A0A1W2PP64 1363 aa10.8□□□□□ -0.68
CD44-211ENST00000442151 ANKRD36BQ8N2N9 1353 aa10.8□□□□□ -0.68
CD44-211ENST00000442151 NFAT5O94916 1531 aa10.79□□□□□ -0.68
CD44-211ENST00000442151 STK32BQ9NY57 414 aa10.79□□□□□ -0.68
CD44-211ENST00000442151 KCNQ2O43526 872 aa10.79□□□□□ -0.68
CD44-211ENST00000442151 TRPC6Q9Y210 931 aa10.79□□□□□ -0.68
CD44-211ENST00000442151 CD163L1Q9NR16 1453 aa10.79□□□□□ -0.68
CD44-211ENST00000442151 USP54Q70EL1 1684 aa10.78□□□□□ -0.68
CD44-211ENST00000442151 USP47Q96K76 1375 aa10.78□□□□□ -0.68
CD44-211ENST00000442151 CGNL1Q0VF96 1302 aa10.78□□□□□ -0.68
CD44-211ENST00000442151 TTLL13PA6NNM8 815 aa10.77□□□□□ -0.68
CD44-211ENST00000442151 TXNRD1Q16881 649 aa10.77□□□□□ -0.69
CD44-211ENST00000442151 PCGF6Q9BYE7 350 aa10.77□□□□□ -0.69
CD44-211ENST00000442151 TNS2Q63HR2 1409 aa10.76□□□□□ -0.69
CD44-211ENST00000442151 SMG6Q86US8 1419 aaKnown RBP10.76□□□□□ -0.69
CD44-211ENST00000442151 KIF24Q5T7B8 1368 aa10.76□□□□□ -0.69
CD44-211ENST00000442151 LTV1Q96GA3 475 aaPredicted RBP10.76□□□□□ -0.69
CD44-211ENST00000442151 LRRC37A3O60309 1634 aa10.75□□□□□ -0.69
CD44-211ENST00000442151 RGPD3A6NKT7 1758 aaPredicted RBP10.75□□□□□ -0.69
CD44-211ENST00000442151 RGPD4Q7Z3J3 1758 aa10.75□□□□□ -0.69
CD44-211ENST00000442151 RTL1A6NKG5 1358 aa10.75□□□□□ -0.69
CD44-211ENST00000442151 HOXC9P31274 260 aa10.75□□□□□ -0.69
CD44-211ENST00000442151 FYB1O15117 783 aa10.74□□□□□ -0.69
CD44-211ENST00000442151 ZCRB1Q8TBF4 217 aaKnown RBP10.74□□□□□ -0.69
CD44-211ENST00000442151 DDX54Q8TDD1 881 aaKnown RBP10.74□□□□□ -0.69
CD44-211ENST00000442151 RAPGEF4Q8WZA2 1011 aa10.74□□□□□ -0.69
CD44-211ENST00000442151 RGPD5Q99666 1765 aa10.74□□□□□ -0.69
CD44-211ENST00000442151 MAP3K19Q56UN5 1328 aa10.74□□□□□ -0.69
CD44-211ENST00000442151 RREB1Q92766 1687 aa10.74□□□□□ -0.69
CD44-211ENST00000442151 SLC27A3Q5K4L6 730 aa10.74□□□□□ -0.69
CD44-211ENST00000442151 PEAK1Q9H792 1746 aa10.74□□□□□ -0.69
CD44-211ENST00000442151 TATP17735 454 aaPredicted RBP10.73□□□□□ -0.69
CD44-211ENST00000442151 SLC15A2Q16348 729 aa10.73□□□□□ -0.69
CD44-211ENST00000442151 WNK3Q9BYP7 1800 aa10.73□□□□□ -0.69
CD44-211ENST00000442151 FAM208AQ9UK61 1670 aaKnown RBP10.73□□□□□ -0.69
CD44-211ENST00000442151 LTN1O94822 1766 aa10.72□□□□□ -0.69
CD44-211ENST00000442151 EIF4G2P78344 907 aaKnown RBP eCLIP10.72□□□□□ -0.69
CD44-211ENST00000442151 ACSBG1Q96GR2 724 aa10.72□□□□□ -0.69
CD44-211ENST00000442151 GGNBP2Q9H3C7 697 aa10.72□□□□□ -0.69
CD44-211ENST00000442151 SBF2Q86WG5 1849 aa10.72□□□□□ -0.69
CD44-211ENST00000442151 NUP188Q5SRE5 1749 aa10.71□□□□□ -0.69
CD44-211ENST00000442151 MAP3K13O43283 966 aa10.71□□□□□ -0.69
CD44-211ENST00000442151 PROM2Q8N271 834 aa10.71□□□□□ -0.69
CD44-211ENST00000442151 CCER1Q8TC90 406 aaPredicted RBP10.71□□□□□ -0.69
CD44-211ENST00000442151 SLC16A10Q8TF71 515 aa10.71□□□□□ -0.69
CD44-211ENST00000442151 MTFR1LQ9H019 292 aa10.7□□□□□ -0.7
CD44-211ENST00000442151 TRIM35Q9UPQ4 493 aa10.7□□□□□ -0.7
CD44-211ENST00000442151 INSRP06213 1382 aa10.7□□□□□ -0.7
CD44-211ENST00000442151 MARVELD3Q96A59 401 aa10.7□□□□□ -0.7
CD44-211ENST00000442151 FLT4P35916 1363 aa10.7□□□□□ -0.7
CD44-211ENST00000442151 RRS1Q15050 365 aaKnown RBP10.69□□□□□ -0.7
CD44-211ENST00000442151 SYTL4Q96C24 671 aaPredicted RBP10.69□□□□□ -0.7
CD44-211ENST00000442151 SPG7Q9UQ90 795 aa10.68□□□□□ -0.7
CD44-211ENST00000442151 NHSQ6T4R5 1651 aa10.68□□□□□ -0.7
CD44-211ENST00000442151 POLD1P28340 1107 aa10.68□□□□□ -0.7
CD44-211ENST00000442151 PRIM1P49642 420 aaKnown RBP10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms