RNA–Protein interactions for RNA: ENST00000438547.6

SEMA4D-211, Transcript of semaphorin 4D, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SEMA4D, Length 4,824 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-211ENST00000438547 DISP3Q9P2K9 1392 aa13.22□□□□□ -0.29
SEMA4D-211ENST00000438547 GLRX3O76003 335 aaKnown RBP13.22□□□□□ -0.29
SEMA4D-211ENST00000438547 XPCQ01831 940 aaPredicted RBP13.22□□□□□ -0.29
SEMA4D-211ENST00000438547 TTC39AQ5SRH9 613 aa13.22□□□□□ -0.29
SEMA4D-211ENST00000438547 TBC1D9Q6ZT07 1266 aa13.22□□□□□ -0.29
SEMA4D-211ENST00000438547 PATL2C9JE40 543 aaKnown RBP13.21□□□□□ -0.29
SEMA4D-211ENST00000438547 ATF3P18847 181 aa13.21□□□□□ -0.29
SEMA4D-211ENST00000438547 CCDC183Q5T5S1 534 aa13.21□□□□□ -0.29
SEMA4D-211ENST00000438547 PDCL2Q8N4E4 241 aa13.21□□□□□ -0.29
SEMA4D-211ENST00000438547 NUDT16Q96DE0 195 aaKnown RBP13.21□□□□□ -0.29
SEMA4D-211ENST00000438547 PIP4K2AP48426 406 aaPredicted RBP13.21□□□□□ -0.3
SEMA4D-211ENST00000438547 IQGAP2Q13576 1575 aa13.21□□□□□ -0.3
SEMA4D-211ENST00000438547 ADGRF5Q8IZF2 1346 aa13.21□□□□□ -0.3
SEMA4D-211ENST00000438547 BAG4O95429 457 aaKnown RBP13.2□□□□□ -0.3
SEMA4D-211ENST00000438547 TRIM34Q9BYJ4 488 aa13.2□□□□□ -0.3
SEMA4D-211ENST00000438547 RAB11FIP3O75154 756 aa13.2□□□□□ -0.3
SEMA4D-211ENST00000438547 TATP17735 454 aaPredicted RBP13.2□□□□□ -0.3
SEMA4D-211ENST00000438547 PPFIBP1Q86W92 1011 aa13.2□□□□□ -0.3
SEMA4D-211ENST00000438547 FAM177A1Q8N128 213 aaPredicted RBP13.2□□□□□ -0.3
SEMA4D-211ENST00000438547 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.2□□□□□ -0.3
SEMA4D-211ENST00000438547 TXLNAP40222 546 aa13.2□□□□□ -0.3
SEMA4D-211ENST00000438547 CAMK4Q16566 473 aa13.2□□□□□ -0.3
SEMA4D-211ENST00000438547 TRIM22Q8IYM9 498 aa13.2□□□□□ -0.3
SEMA4D-211ENST00000438547 PCDHB15Q9Y5E8 787 aa13.2□□□□□ -0.3
SEMA4D-211ENST00000438547 CBFA2T2O43439 604 aa13.19□□□□□ -0.3
SEMA4D-211ENST00000438547 RAPGEF3O95398 923 aa13.19□□□□□ -0.3
SEMA4D-211ENST00000438547 MYL6BP14649 208 aa13.19□□□□□ -0.3
SEMA4D-211ENST00000438547 DDX11Q96FC9 970 aa13.19□□□□□ -0.3
SEMA4D-211ENST00000438547 PRPF40BQ6NWY9 871 aaKnown RBP13.19□□□□□ -0.3
SEMA4D-211ENST00000438547 ZMYND15Q9H091 742 aa13.19□□□□□ -0.3
SEMA4D-211ENST00000438547 DACH1Q9UI36 760 aa13.19□□□□□ -0.3
SEMA4D-211ENST00000438547 MTMR7Q9Y216 660 aa13.19□□□□□ -0.3
SEMA4D-211ENST00000438547 GNAT3A8MTJ3 354 aa13.19□□□□□ -0.3
SEMA4D-211ENST00000438547 LEKR1Q6ZMV7 388 aa13.19□□□□□ -0.3
SEMA4D-211ENST00000438547 DHX29Q7Z478 1369 aaKnown RBP13.19□□□□□ -0.3
SEMA4D-211ENST00000438547 SCAND2PQ9GZW5 306 aaPredicted RBP13.19□□□□□ -0.3
SEMA4D-211ENST00000438547 CNNM1Q9NRU3 951 aa13.19□□□□□ -0.3
SEMA4D-211ENST00000438547 KLHL40Q2TBA0 621 aa13.18□□□□□ -0.3
SEMA4D-211ENST00000438547 MAGEC2Q9UBF1 373 aaPredicted RBP13.18□□□□□ -0.3
SEMA4D-211ENST00000438547 BTBD11A6QL63 1104 aa13.18□□□□□ -0.3
SEMA4D-211ENST00000438547 C8orf34Q49A92 452 aa13.18□□□□□ -0.3
SEMA4D-211ENST00000438547 TCEAL9Q9UHQ7 104 aa13.18□□□□□ -0.3
SEMA4D-211ENST00000438547 CTNNA3Q9UI47 895 aa13.18□□□□□ -0.3
SEMA4D-211ENST00000438547 SCAF11Q99590 1463 aaKnown RBP13.18□□□□□ -0.3
SEMA4D-211ENST00000438547 PTPRKQ15262 1439 aa13.18□□□□□ -0.3
SEMA4D-211ENST00000438547 F6X3S4 739 aa13.18□□□□□ -0.3
SEMA4D-211ENST00000438547 USP25Q9UHP3 1055 aa13.18□□□□□ -0.3
SEMA4D-211ENST00000438547 H0YHG0 523 aa13.18□□□□□ -0.3
SEMA4D-211ENST00000438547 HDAC1Q13547 482 aaPredicted RBP13.18□□□□□ -0.3
SEMA4D-211ENST00000438547 SH2B1Q9NRF2 756 aaPredicted RBP13.18□□□□□ -0.3
SEMA4D-211ENST00000438547 PLB1Q6P1J6 1458 aa13.18□□□□□ -0.3
SEMA4D-211ENST00000438547 PLEKHH1Q9ULM0 1364 aa13.17□□□□□ -0.3
SEMA4D-211ENST00000438547 EPS15P42566 896 aa13.17□□□□□ -0.3
SEMA4D-211ENST00000438547 FKBP4Q02790 459 aaKnown RBP eCLIP13.17□□□□□ -0.3
SEMA4D-211ENST00000438547 KIF6Q6ZMV9 814 aa13.17□□□□□ -0.3
SEMA4D-211ENST00000438547 WAPLQ7Z5K2 1190 aa13.17□□□□□ -0.3
SEMA4D-211ENST00000438547 RBM33Q96EV2 1170 aaKnown RBP13.17□□□□□ -0.3
SEMA4D-211ENST00000438547 LIMCH1Q9UPQ0 1083 aa13.17□□□□□ -0.3
SEMA4D-211ENST00000438547 EMILIN1Q9Y6C2 1016 aa13.17□□□□□ -0.3
SEMA4D-211ENST00000438547 FAM177BA6PVY3 158 aa13.17□□□□□ -0.3
SEMA4D-211ENST00000438547 SMTNL1A8MU46 457 aa13.17□□□□□ -0.3
SEMA4D-211ENST00000438547 ZNHIT6Q9NWK9 470 aaKnown RBP13.17□□□□□ -0.3
SEMA4D-211ENST00000438547 STK11IPQ8N1F8 1099 aa13.16□□□□□ -0.3
SEMA4D-211ENST00000438547 SLC26A8Q96RN1 970 aa13.16□□□□□ -0.3
SEMA4D-211ENST00000438547 PDCL3Q9H2J4 239 aa13.16□□□□□ -0.3
SEMA4D-211ENST00000438547 CEP126Q9P2H0 1117 aa13.16□□□□□ -0.3
SEMA4D-211ENST00000438547 XRCC6P12956 609 aaKnown RBP eCLIP13.16□□□□□ -0.3
SEMA4D-211ENST00000438547 AXDND1Q5T1B0 1012 aaPredicted RBP13.16□□□□□ -0.3
SEMA4D-211ENST00000438547 CDKL5O76039 1030 aa13.16□□□□□ -0.3
SEMA4D-211ENST00000438547 NME9Q86XW9 330 aa13.16□□□□□ -0.3
SEMA4D-211ENST00000438547 DDX54Q8TDD1 881 aaKnown RBP13.16□□□□□ -0.3
SEMA4D-211ENST00000438547 GDPD2Q9HCC8 539 aa13.16□□□□□ -0.3
SEMA4D-211ENST00000438547 UBXN4Q92575 508 aa13.16□□□□□ -0.3
SEMA4D-211ENST00000438547 NACAP1Q9BZK3 213 aa13.16□□□□□ -0.3
SEMA4D-211ENST00000438547 PTPN14Q15678 1187 aa13.15□□□□□ -0.3
SEMA4D-211ENST00000438547 CCDC57Q2TAC2 916 aa13.15□□□□□ -0.3
SEMA4D-211ENST00000438547 ERLIN1O75477 346 aa13.15□□□□□ -0.3
SEMA4D-211ENST00000438547 MCM5P33992 734 aa13.15□□□□□ -0.3
SEMA4D-211ENST00000438547 CABP4P57796 275 aa13.15□□□□□ -0.3
SEMA4D-211ENST00000438547 CUL7Q14999 1698 aa13.15□□□□□ -0.3
SEMA4D-211ENST00000438547 CCDC69A6NI79 296 aa13.15□□□□□ -0.3
SEMA4D-211ENST00000438547 IL16Q14005 1332 aa13.15□□□□□ -0.3
SEMA4D-211ENST00000438547 KIF2AO00139 706 aaPredicted RBP13.15□□□□□ -0.3
SEMA4D-211ENST00000438547 NUCB1Q02818 461 aa13.15□□□□□ -0.3
SEMA4D-211ENST00000438547 ZSCAN25Q6NSZ9 544 aa13.15□□□□□ -0.3
SEMA4D-211ENST00000438547 RBM42Q9BTD8 480 aaKnown RBP13.15□□□□□ -0.3
SEMA4D-211ENST00000438547 LRRFIP2Q9Y608 721 aaKnown RBP13.14□□□□□ -0.31
SEMA4D-211ENST00000438547 BOLA2Q9H3K6 86 aa13.14□□□□□ -0.31
SEMA4D-211ENST00000438547 PARD3Q8TEW0 1356 aa13.14□□□□□ -0.31
SEMA4D-211ENST00000438547 SLC3A2P08195 630 aaKnown RBP13.14□□□□□ -0.31
SEMA4D-211ENST00000438547 SFPQP23246 707 aaKnown RBP eCLIP13.14□□□□□ -0.31
SEMA4D-211ENST00000438547 CLCN1P35523 988 aa13.14□□□□□ -0.31
SEMA4D-211ENST00000438547 CT47A1Q5JQC4 288 aaPredicted RBP13.14□□□□□ -0.31
SEMA4D-211ENST00000438547 TTC22Q5TAA0 569 aa13.14□□□□□ -0.31
SEMA4D-211ENST00000438547 CCDC43Q96MW1 224 aaKnown RBP13.14□□□□□ -0.31
SEMA4D-211ENST00000438547 PTPRCP08575 1304 aa13.14□□□□□ -0.31
SEMA4D-211ENST00000438547 TAF7Q15545 349 aaPredicted RBP13.14□□□□□ -0.31
SEMA4D-211ENST00000438547 CFAP100Q494V2 611 aa13.14□□□□□ -0.31
SEMA4D-211ENST00000438547 ANO10Q9NW15 660 aa13.14□□□□□ -0.31
SEMA4D-211ENST00000438547 THEMISQ8N1K5 641 aaPredicted RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms