RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 STK38Q15208 465 aa8.4□□□□□ -1.07
VPS53-204ENST00000437048 SMARCC1Q92922 1105 aaPredicted RBP8.4□□□□□ -1.07
VPS53-204ENST00000437048 SAFB2Q14151 953 aaKnown RBP eCLIP8.39□□□□□ -1.07
VPS53-204ENST00000437048 CRBNQ96SW2 442 aa8.39□□□□□ -1.07
VPS53-204ENST00000437048 MYO1BO43795 1136 aa8.39□□□□□ -1.07
VPS53-204ENST00000437048 SERPINC1P01008 464 aa8.39□□□□□ -1.07
VPS53-204ENST00000437048 BMP15O95972 392 aa8.39□□□□□ -1.07
VPS53-204ENST00000437048 SUDS3Q9H7L9 328 aaPredicted RBP8.39□□□□□ -1.07
VPS53-204ENST00000437048 TTC12Q9H892 705 aaPredicted RBP8.39□□□□□ -1.07
VPS53-204ENST00000437048 CCDC102AQ96A19 550 aa8.39□□□□□ -1.07
VPS53-204ENST00000437048 FGD6Q6ZV73 1430 aa8.39□□□□□ -1.07
VPS53-204ENST00000437048 CASTP20810 708 aaKnown RBP8.39□□□□□ -1.07
VPS53-204ENST00000437048 POTEDQ86YR6 584 aa8.39□□□□□ -1.07
VPS53-204ENST00000437048 UPF3BQ9BZI7 483 aaKnown RBP8.39□□□□□ -1.07
VPS53-204ENST00000437048 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.39□□□□□ -1.073e-7■■■■□ 22.8
VPS53-204ENST00000437048 MAP2K1Q02750 393 aaPredicted RBP8.39□□□□□ -1.07
VPS53-204ENST00000437048 ALS2CR12Q96Q35 445 aa8.39□□□□□ -1.07
VPS53-204ENST00000437048 KANK4Q5T7N3 995 aaPredicted RBP8.39□□□□□ -1.07
VPS53-204ENST00000437048 PLCD4Q9BRC7 762 aa8.39□□□□□ -1.07
VPS53-204ENST00000437048 MKRN1Q9UHC7 482 aaKnown RBP8.39□□□□□ -1.07
VPS53-204ENST00000437048 PIP4K2BP78356 416 aa8.39□□□□□ -1.07
VPS53-204ENST00000437048 RSRC1Q96IZ7 334 aaKnown RBP8.39□□□□□ -1.07
VPS53-204ENST00000437048 TACO1Q9BSH4 297 aaKnown RBP8.38□□□□□ -1.07
VPS53-204ENST00000437048 SMARCA4P51532 1647 aa8.38□□□□□ -1.07
VPS53-204ENST00000437048 OPA1O60313 960 aa8.38□□□□□ -1.07
VPS53-204ENST00000437048 FHOD3Q2V2M9 1422 aa8.38□□□□□ -1.07
VPS53-204ENST00000437048 MSH5O43196 834 aa8.38□□□□□ -1.07
VPS53-204ENST00000437048 CNGA1P29973 690 aa8.38□□□□□ -1.07
VPS53-204ENST00000437048 CCDC57Q2TAC2 916 aa8.38□□□□□ -1.07
VPS53-204ENST00000437048 SOGA1O94964 1423 aa8.38□□□□□ -1.07
VPS53-204ENST00000437048 TEFQ10587 303 aa8.38□□□□□ -1.07
VPS53-204ENST00000437048 SPAG1Q07617 926 aa8.38□□□□□ -1.07
VPS53-204ENST00000437048 ATL3Q6DD88 541 aa8.38□□□□□ -1.07
VPS53-204ENST00000437048 PNISRQ8TF01 805 aaKnown RBP8.38□□□□□ -1.07
VPS53-204ENST00000437048 TBC1D2BQ9UPU7 963 aa8.38□□□□□ -1.07
VPS53-204ENST00000437048 ZBTB17Q13105 803 aa8.38□□□□□ -1.07
VPS53-204ENST00000437048 CTAGE1Q96RT6 745 aa8.38□□□□□ -1.07
VPS53-204ENST00000437048 ZNF287Q9HBT7 754 aa8.38□□□□□ -1.07
VPS53-204ENST00000437048 COG3Q96JB2 828 aa8.38□□□□□ -1.07
VPS53-204ENST00000437048 RAB34Q9BZG1 259 aa8.38□□□□□ -1.07
VPS53-204ENST00000437048 EID1Q9Y6B2 187 aa8.38□□□□□ -1.07
VPS53-204ENST00000437048 HECW1Q76N89 1606 aa8.38□□□□□ -1.07
VPS53-204ENST00000437048 CCDC94Q9BW85 323 aaPredicted RBP8.37□□□□□ -1.07
VPS53-204ENST00000437048 NACAP1Q9BZK3 213 aa8.37□□□□□ -1.07
VPS53-204ENST00000437048 DAAM2Q86T65 1068 aa8.37□□□□□ -1.07
VPS53-204ENST00000437048 LRRC27Q9C0I9 530 aa8.37□□□□□ -1.07
VPS53-204ENST00000437048 DIAPH1O60610 1272 aaKnown RBP8.37□□□□□ -1.07
VPS53-204ENST00000437048 SPA17Q15506 151 aa8.37□□□□□ -1.07
VPS53-204ENST00000437048 RPAP2Q8IXW5 612 aaPredicted RBP8.37□□□□□ -1.07
VPS53-204ENST00000437048 USP25Q9UHP3 1055 aa8.37□□□□□ -1.07
VPS53-204ENST00000437048 ZFYP08048 801 aaPredicted RBP8.37□□□□□ -1.07
VPS53-204ENST00000437048 RBM10P98175 930 aaKnown RBP8.37□□□□□ -1.07
VPS53-204ENST00000437048 C1orf141Q5JVX7 400 aa8.37□□□□□ -1.07
VPS53-204ENST00000437048 PDILTQ8N807 584 aa8.37□□□□□ -1.07
VPS53-204ENST00000437048 IFT74Q96LB3 600 aa8.37□□□□□ -1.07
VPS53-204ENST00000437048 MNAT1P51948 309 aa8.37□□□□□ -1.07
VPS53-204ENST00000437048 CDK5RAP3Q96JB5 506 aa8.37□□□□□ -1.07
VPS53-204ENST00000437048 CEP112Q8N8E3 955 aa8.37□□□□□ -1.07
VPS53-204ENST00000437048 FMNL2Q96PY5 1086 aa8.37□□□□□ -1.07
VPS53-204ENST00000437048 ARHGAP25P42331 645 aa8.36□□□□□ -1.07
VPS53-204ENST00000437048 ARID4AP29374 1257 aaPredicted RBP8.36□□□□□ -1.07
VPS53-204ENST00000437048 WWC2Q6AWC2 1192 aa8.36□□□□□ -1.07
VPS53-204ENST00000437048 CASKIN1Q8WXD9 1431 aa8.36□□□□□ -1.07
VPS53-204ENST00000437048 PATL2C9JE40 543 aaKnown RBP8.36□□□□□ -1.07
VPS53-204ENST00000437048 TRIM34Q9BYJ4 488 aa8.36□□□□□ -1.07
VPS53-204ENST00000437048 EBAG9O00559 213 aa8.36□□□□□ -1.07
VPS53-204ENST00000437048 GTF2A1P52655 376 aaPredicted RBP8.36□□□□□ -1.07
VPS53-204ENST00000437048 RNF168Q8IYW5 571 aaPredicted RBP8.36□□□□□ -1.07
VPS53-204ENST00000437048 GPRASP1Q5JY77 1395 aa8.36□□□□□ -1.07
VPS53-204ENST00000437048 IQCDQ96DY2 449 aa8.36□□□□□ -1.07
VPS53-204ENST00000437048 FERMT1Q9BQL6 677 aa8.36□□□□□ -1.07
VPS53-204ENST00000437048 EXOC6Q8TAG9 804 aa8.36□□□□□ -1.07
VPS53-204ENST00000437048 CLIP2Q9UDT6 1046 aa8.36□□□□□ -1.07
VPS53-204ENST00000437048 RPGRIP1LQ68CZ1 1315 aa8.36□□□□□ -1.07
VPS53-204ENST00000437048 JAKMIP2Q96AA8 810 aa8.36□□□□□ -1.07
VPS53-204ENST00000437048 CCDC9Q9Y3X0 531 aaKnown RBP8.36□□□□□ -1.07
VPS53-204ENST00000437048 GON4LQ3T8J9 2241 aa8.36□□□□□ -1.07
VPS53-204ENST00000437048 NFXL1Q6ZNB6 911 aa8.36□□□□□ -1.07
VPS53-204ENST00000437048 FAM184BQ9ULE4 1060 aa8.36□□□□□ -1.07
VPS53-204ENST00000437048 FKBP15Q5T1M5 1219 aa8.35□□□□□ -1.07
VPS53-204ENST00000437048 NCAPD3P42695 1498 aa8.35□□□□□ -1.07
VPS53-204ENST00000437048 LRRC9Q6ZRR7 1453 aa8.35□□□□□ -1.07
VPS53-204ENST00000437048 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.35□□□□□ -1.07
VPS53-204ENST00000437048 RASSF4Q9H2L5 321 aa8.35□□□□□ -1.07
VPS53-204ENST00000437048 CCDC6Q16204 474 aa8.35□□□□□ -1.07
VPS53-204ENST00000437048 NSD2O96028 1365 aa8.35□□□□□ -1.07
VPS53-204ENST00000437048 INSRP06213 1382 aa8.35□□□□□ -1.07
VPS53-204ENST00000437048 LUC7L2Q9Y383 392 aaKnown RBP8.35□□□□□ -1.07
VPS53-204ENST00000437048 AMPHP49418 695 aa8.35□□□□□ -1.07
VPS53-204ENST00000437048 ANAPC15P60006 121 aa8.35□□□□□ -1.07
VPS53-204ENST00000437048 CCDC30Q5VVM6 783 aa8.35□□□□□ -1.07
VPS53-204ENST00000437048 NKTRP30414 1462 aaKnown RBP8.35□□□□□ -1.07
VPS53-204ENST00000437048 RAB11FIP3O75154 756 aa8.35□□□□□ -1.07
VPS53-204ENST00000437048 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.35□□□□□ -1.071e-6■■■■■ 229.7
VPS53-204ENST00000437048 SLMAPQ14BN4 828 aa8.34□□□□□ -1.07
VPS53-204ENST00000437048 TTC5Q8N0Z6 440 aa8.34□□□□□ -1.07
VPS53-204ENST00000437048 RAD50Q92878 1312 aa8.34□□□□□ -1.07
VPS53-204ENST00000437048 NEK4P51957 841 aa8.34□□□□□ -1.07
VPS53-204ENST00000437048 SLC4A10Q6U841 1118 aa8.34□□□□□ -1.07
VPS53-204ENST00000437048 CETN1Q12798 172 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms