RNA–Protein interactions for RNA: ENST00000427943.1

PSPC1-202, Transcript of paraspeckle component 1, humanhuman

TSL 5

Gene PSPC1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-202ENST00000427943 CASZ1Q86V15 1759 aa25.46■■□□□ 1.67
PSPC1-202ENST00000427943 PROM2Q8N271 834 aa25.45■■□□□ 1.66
PSPC1-202ENST00000427943 KIF24Q5T7B8 1368 aa25.44■■□□□ 1.66
PSPC1-202ENST00000427943 TXNRD1Q16881 649 aa25.42■■□□□ 1.66
PSPC1-202ENST00000427943 PAPPAQ13219 1627 aa25.41■■□□□ 1.66
PSPC1-202ENST00000427943 PPM1GO15355 546 aaPredicted RBP25.4■■□□□ 1.66
PSPC1-202ENST00000427943 ZCRB1Q8TBF4 217 aaKnown RBP25.39■■□□□ 1.66
PSPC1-202ENST00000427943 PKD1L3Q7Z443 1732 aa25.39■■□□□ 1.65
PSPC1-202ENST00000427943 PANK3Q9H999 370 aa25.38■■□□□ 1.65
PSPC1-202ENST00000427943 RAPGEF4Q8WZA2 1011 aa25.37■■□□□ 1.65
PSPC1-202ENST00000427943 LY75O60449 1722 aa25.36■■□□□ 1.65
PSPC1-202ENST00000427943 TATP17735 454 aaPredicted RBP25.35■■□□□ 1.65
PSPC1-202ENST00000427943 TNNT2P45379 298 aaPredicted RBP25.35■■□□□ 1.65
PSPC1-202ENST00000427943 SYTL4Q96C24 671 aaPredicted RBP25.34■■□□□ 1.65
PSPC1-202ENST00000427943 TOGARAM1Q9Y4F4 1720 aa25.34■■□□□ 1.65
PSPC1-202ENST00000427943 NCAPD2Q15021 1401 aa25.33■■□□□ 1.65
PSPC1-202ENST00000427943 STK32BQ9NY57 414 aa25.33■■□□□ 1.65
PSPC1-202ENST00000427943 POLKQ9UBT6 870 aa25.33■■□□□ 1.65
PSPC1-202ENST00000427943 ITGB4P16144 1822 aa25.33■■□□□ 1.64
PSPC1-202ENST00000427943 NSD2O96028 1365 aa25.32■■□□□ 1.64
PSPC1-202ENST00000427943 PDGFDQ9GZP0 370 aaPredicted RBP25.32■■□□□ 1.64
PSPC1-202ENST00000427943 TUBGCP6Q96RT7 1819 aa25.32■■□□□ 1.64
PSPC1-202ENST00000427943 WASHC2AQ641Q2 1341 aa25.32■■□□□ 1.64
PSPC1-202ENST00000427943 PRIM1P49642 420 aaKnown RBP25.31■■□□□ 1.64
PSPC1-202ENST00000427943 SLC15A2Q16348 729 aa25.3■■□□□ 1.64
PSPC1-202ENST00000427943 SPON1Q9HCB6 807 aa25.3■■□□□ 1.64
PSPC1-202ENST00000427943 PCDH11XQ9BZA7 1347 aa25.29■■□□□ 1.64
PSPC1-202ENST00000427943 PCDH11YQ9BZA8 1340 aa25.29■■□□□ 1.64
PSPC1-202ENST00000427943 LRRC4BQ9NT99 713 aa25.28■■□□□ 1.64
PSPC1-202ENST00000427943 KIF7Q2M1P5 1343 aa25.28■■□□□ 1.64
PSPC1-202ENST00000427943 QSER1Q2KHR3 1735 aa25.28■■□□□ 1.64
PSPC1-202ENST00000427943 EYA1Q99502 592 aa25.26■■□□□ 1.63
PSPC1-202ENST00000427943 ZBTB7AO95365 584 aa25.25■■□□□ 1.63
PSPC1-202ENST00000427943 PPP1R1BQ9UD71 204 aaPredicted RBP25.25■■□□□ 1.63
PSPC1-202ENST00000427943 EIF4A2Q14240 407 aaKnown RBP25.24■■□□□ 1.63
PSPC1-202ENST00000427943 ZNF827Q17R98 1081 aa25.24■■□□□ 1.63
PSPC1-202ENST00000427943 CYP27B1O15528 508 aa25.23■■□□□ 1.63
PSPC1-202ENST00000427943 KCNQ4P56696 695 aa25.23■■□□□ 1.63
PSPC1-202ENST00000427943 MORC1Q86VD1 984 aa25.22■■□□□ 1.63
PSPC1-202ENST00000427943 KNSTRNQ9Y448 316 aa25.22■■□□□ 1.63
PSPC1-202ENST00000427943 C5P01031 1676 aa25.22■■□□□ 1.63
PSPC1-202ENST00000427943 TAF1LQ8IZX4 1826 aa25.21■■□□□ 1.63
PSPC1-202ENST00000427943 SLC27A3Q5K4L6 730 aa25.21■■□□□ 1.63
PSPC1-202ENST00000427943 ATF5Q9Y2D1 282 aaPredicted RBP25.19■■□□□ 1.62
PSPC1-202ENST00000427943 SPG7Q9UQ90 795 aa25.18■■□□□ 1.62
PSPC1-202ENST00000427943 AKT1S1Q96B36 256 aa25.17■■□□□ 1.62
PSPC1-202ENST00000427943 IGSF1Q8N6C5 1336 aa25.16■■□□□ 1.62
PSPC1-202ENST00000427943 MPRIPQ6WCQ1 1025 aa25.16■■□□□ 1.62
PSPC1-202ENST00000427943 CCNL1Q9UK58 526 aaPredicted RBP25.16■■□□□ 1.62
PSPC1-202ENST00000427943 PTGER2P43116 358 aa25.15■■□□□ 1.62
PSPC1-202ENST00000427943 AMER1Q5JTC6 1135 aaPredicted RBP25.15■■□□□ 1.62
PSPC1-202ENST00000427943 MTFR1LQ9H019 292 aa25.14■■□□□ 1.62
PSPC1-202ENST00000427943 PALLDQ8WX93 1383 aa25.13■■□□□ 1.61
PSPC1-202ENST00000427943 COL24A1Q17RW2 1714 aa25.12■■□□□ 1.61
PSPC1-202ENST00000427943 PNPLA7Q6ZV29 1317 aa25.12■■□□□ 1.61
PSPC1-202ENST00000427943 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.11■■□□□ 1.616e-7■■■■□ 26.5
PSPC1-202ENST00000427943 PHKG2P15735 406 aa25.1■■□□□ 1.61
PSPC1-202ENST00000427943 NKX1-1Q15270 411 aaPredicted RBP25.1■■□□□ 1.61
PSPC1-202ENST00000427943 TFCP2L1Q9NZI6 479 aa25.1■■□□□ 1.61
PSPC1-202ENST00000427943 C4BP0C0L5 1744 aa25.09■■□□□ 1.61
PSPC1-202ENST00000427943 IFNL2Q8IZJ0 200 aa25.08■■□□□ 1.61
PSPC1-202ENST00000427943 PIGBQ92521 554 aa25.08■■□□□ 1.61
PSPC1-202ENST00000427943 SGIP1Q9BQI5 828 aa25.08■■□□□ 1.61
PSPC1-202ENST00000427943 PLEKHG2Q9H7P9 1386 aa25.07■■□□□ 1.6
PSPC1-202ENST00000427943 PER1O15534 1290 aaPredicted RBP25.07■■□□□ 1.6
PSPC1-202ENST00000427943 AEBP1Q8IUX7 1158 aa25.07■■□□□ 1.6
PSPC1-202ENST00000427943 CC2D1BQ5T0F9 858 aaKnown RBP25.06■■□□□ 1.6
PSPC1-202ENST00000427943 VIRMAQ69YN4 1812 aaKnown RBP25.06■■□□□ 1.6
PSPC1-202ENST00000427943 UBR3Q6ZT12 1888 aa25.05■■□□□ 1.6
PSPC1-202ENST00000427943 CNGB1Q14028 1251 aaPredicted RBP25.04■■□□□ 1.6
PSPC1-202ENST00000427943 SMARCC1Q92922 1105 aaPredicted RBP25.04■■□□□ 1.6
PSPC1-202ENST00000427943 TMOD3Q9NYL9 352 aa25.04■■□□□ 1.6
PSPC1-202ENST00000427943 FHDC1Q9C0D6 1143 aaPredicted RBP25.03■■□□□ 1.6
PSPC1-202ENST00000427943 IL13P35225 146 aa25.02■■□□□ 1.6
PSPC1-202ENST00000427943 MTHFSP49914 203 aa25.02■■□□□ 1.6
PSPC1-202ENST00000427943 SULT6B1Q6IMI4 303 aa25.02■■□□□ 1.6
PSPC1-202ENST00000427943 SCN11AQ9UI33 1791 aa25.01■■□□□ 1.59
PSPC1-202ENST00000427943 PLEKHO1Q53GL0 409 aaPredicted RBP25.01■■□□□ 1.59
PSPC1-202ENST00000427943 ZNF530Q6P9A1 599 aaPredicted RBP25.01■■□□□ 1.59
PSPC1-202ENST00000427943 SLC16A10Q8TF71 515 aa25.01■■□□□ 1.59
PSPC1-202ENST00000427943 ARXQ96QS3 562 aa25.01■■□□□ 1.59
PSPC1-202ENST00000427943 KDM6AO15550 1401 aaPredicted RBP25.01■■□□□ 1.59
PSPC1-202ENST00000427943 MSH5O43196 834 aa25■■□□□ 1.59
PSPC1-202ENST00000427943 KDRP35968 1356 aa25■■□□□ 1.59
PSPC1-202ENST00000427943 ASAP1Q9ULH1 1129 aa24.99■■□□□ 1.59
PSPC1-202ENST00000427943 COL23A1Q86Y22 540 aaPredicted RBP24.98■■□□□ 1.59
PSPC1-202ENST00000427943 AMOTQ4VCS5 1084 aa24.97■■□□□ 1.59
PSPC1-202ENST00000427943 SYT17Q9BSW7 474 aa24.97■■□□□ 1.59
PSPC1-202ENST00000427943 NPC1L1Q9UHC9 1359 aa24.96■■□□□ 1.59
PSPC1-202ENST00000427943 LOC102724428A0A0B4J2F2 783 aa24.96■■□□□ 1.59
PSPC1-202ENST00000427943 SIK1P57059 783 aa24.96■■□□□ 1.59
PSPC1-202ENST00000427943 DCAF5Q96JK2 942 aa24.96■■□□□ 1.59
PSPC1-202ENST00000427943 COL5A3P25940 1745 aaPredicted RBP24.95■■□□□ 1.59
PSPC1-202ENST00000427943 ZNF831Q5JPB2 1677 aa24.95■■□□□ 1.58
PSPC1-202ENST00000427943 DCAF8L1A6NGE4 600 aa24.95■■□□□ 1.58
PSPC1-202ENST00000427943 HSP90AB1P08238 724 aaKnown RBP24.95■■□□□ 1.58
PSPC1-202ENST00000427943 POLD1P28340 1107 aa24.95■■□□□ 1.58
PSPC1-202ENST00000427943 AK7Q96M32 723 aa24.95■■□□□ 1.58
PSPC1-202ENST00000427943 ATG3Q9NT62 314 aa24.95■■□□□ 1.58
PSPC1-202ENST00000427943 COL3A1P02461 1466 aaPredicted RBP24.95■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms