RNA–Protein interactions for RNA: ENST00000422887.1

ECHDC3-203, Transcript of enoyl-CoA hydratase domain containing 3, humanhuman

TSL 2

Gene ECHDC3, Length 623 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3-203ENST00000422887 NBPF6Q5VWK0 638 aa13.34□□□□□ -0.27
ECHDC3-203ENST00000422887 NBPF4Q96M43 638 aa13.34□□□□□ -0.27
ECHDC3-203ENST00000422887 EYA1Q99502 592 aa13.34□□□□□ -0.27
ECHDC3-203ENST00000422887 BTAF1O14981 1849 aa13.34□□□□□ -0.27
ECHDC3-203ENST00000422887 KAT6BQ8WYB5 2073 aa13.33□□□□□ -0.27
ECHDC3-203ENST00000422887 CCER2I3L3R5 266 aa13.33□□□□□ -0.28
ECHDC3-203ENST00000422887 USP35Q9P2H5 1018 aa13.33□□□□□ -0.28
ECHDC3-203ENST00000422887 BCL9O00512 1426 aa13.32□□□□□ -0.28
ECHDC3-203ENST00000422887 RREB1Q92766 1687 aa13.32□□□□□ -0.28
ECHDC3-203ENST00000422887 IL2RBP14784 551 aa13.32□□□□□ -0.28
ECHDC3-203ENST00000422887 RAPGEF4Q8WZA2 1011 aa13.32□□□□□ -0.28
ECHDC3-203ENST00000422887 LY75O60449 1722 aa13.31□□□□□ -0.28
ECHDC3-203ENST00000422887 U2SURPO15042 1029 aaKnown RBP13.31□□□□□ -0.28
ECHDC3-203ENST00000422887 WDR43Q15061 677 aaKnown RBP eCLIP13.31□□□□□ -0.28
ECHDC3-203ENST00000422887 MRS2Q9HD23 443 aa13.31□□□□□ -0.28
ECHDC3-203ENST00000422887 PAPPAQ13219 1627 aa13.31□□□□□ -0.28
ECHDC3-203ENST00000422887 TATP17735 454 aaPredicted RBP13.3□□□□□ -0.28
ECHDC3-203ENST00000422887 FAM98CQ17RN3 349 aaKnown RBP13.3□□□□□ -0.28
ECHDC3-203ENST00000422887 SULT6B1Q6IMI4 303 aa13.3□□□□□ -0.28
ECHDC3-203ENST00000422887 PNNQ9H307 717 aaKnown RBP13.3□□□□□ -0.28
ECHDC3-203ENST00000422887 FCHSD2O94868 740 aa13.29□□□□□ -0.28
ECHDC3-203ENST00000422887 U2AF1L5P0DN76 240 aaPredicted RBP13.29□□□□□ -0.28
ECHDC3-203ENST00000422887 U2AF1Q01081 240 aaKnown RBP eCLIP13.29□□□□□ -0.28
ECHDC3-203ENST00000422887 USHBP1Q8N6Y0 703 aa13.29□□□□□ -0.28
ECHDC3-203ENST00000422887 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.29□□□□□ -0.28
ECHDC3-203ENST00000422887 TAF1LQ8IZX4 1826 aa13.28□□□□□ -0.28
ECHDC3-203ENST00000422887 A0A0G2JS52 829 aa13.28□□□□□ -0.28
ECHDC3-203ENST00000422887 MYT1Q01538 1121 aa13.28□□□□□ -0.28
ECHDC3-203ENST00000422887 DDB1Q16531 1140 aa13.28□□□□□ -0.28
ECHDC3-203ENST00000422887 CICQ96RK0 1608 aaPredicted RBP13.28□□□□□ -0.28
ECHDC3-203ENST00000422887 UBR2Q8IWV8 1755 aa13.27□□□□□ -0.28
ECHDC3-203ENST00000422887 NEFMP07197 916 aa13.27□□□□□ -0.29
ECHDC3-203ENST00000422887 AMOTQ4VCS5 1084 aa13.27□□□□□ -0.29
ECHDC3-203ENST00000422887 AEBP1Q8IUX7 1158 aa13.27□□□□□ -0.29
ECHDC3-203ENST00000422887 SEPT12Q8IYM1 358 aa13.27□□□□□ -0.29
ECHDC3-203ENST00000422887 RSPH6AQ9H0K4 717 aa13.27□□□□□ -0.29
ECHDC3-203ENST00000422887 PCDH11XQ9BZA7 1347 aa13.27□□□□□ -0.29
ECHDC3-203ENST00000422887 PCDH11YQ9BZA8 1340 aa13.27□□□□□ -0.29
ECHDC3-203ENST00000422887 NUP188Q5SRE5 1749 aa13.27□□□□□ -0.29
ECHDC3-203ENST00000422887 EXOC5O00471 708 aa13.26□□□□□ -0.29
ECHDC3-203ENST00000422887 HMOX1P09601 288 aa13.26□□□□□ -0.29
ECHDC3-203ENST00000422887 ZNF831Q5JPB2 1677 aa13.26□□□□□ -0.29
ECHDC3-203ENST00000422887 SPG7Q9UQ90 795 aa13.26□□□□□ -0.29
ECHDC3-203ENST00000422887 MRC1P22897 1456 aa13.25□□□□□ -0.29
ECHDC3-203ENST00000422887 PRKAR2BP31323 418 aa13.25□□□□□ -0.29
ECHDC3-203ENST00000422887 PLEKHO1Q53GL0 409 aaPredicted RBP13.25□□□□□ -0.29
ECHDC3-203ENST00000422887 ZCRB1Q8TBF4 217 aaKnown RBP13.25□□□□□ -0.29
ECHDC3-203ENST00000422887 MAPK8IP3Q9UPT6 1336 aa13.24□□□□□ -0.29
ECHDC3-203ENST00000422887 PDE3BQ13370 1112 aa13.24□□□□□ -0.29
ECHDC3-203ENST00000422887 CCDC184Q52MB2 194 aa13.24□□□□□ -0.29
ECHDC3-203ENST00000422887 MIER1Q8N108 512 aa13.24□□□□□ -0.29
ECHDC3-203ENST00000422887 GAS2L2Q8NHY3 880 aa13.24□□□□□ -0.29
ECHDC3-203ENST00000422887 PNISRQ8TF01 805 aaKnown RBP13.24□□□□□ -0.29
ECHDC3-203ENST00000422887 TUBGCP6Q96RT7 1819 aa13.24□□□□□ -0.29
ECHDC3-203ENST00000422887 KDM3BQ7LBC6 1761 aa13.23□□□□□ -0.29
ECHDC3-203ENST00000422887 KRT27Q7Z3Y8 459 aa13.22□□□□□ -0.29
ECHDC3-203ENST00000422887 ADAMTS8Q9UP79 889 aa13.22□□□□□ -0.29
ECHDC3-203ENST00000422887 COL5A3P25940 1745 aaPredicted RBP13.22□□□□□ -0.29
ECHDC3-203ENST00000422887 QSER1Q2KHR3 1735 aa13.22□□□□□ -0.29
ECHDC3-203ENST00000422887 HSP90AB1P08238 724 aaKnown RBP13.21□□□□□ -0.29
ECHDC3-203ENST00000422887 IFNL2Q8IZJ0 200 aa13.21□□□□□ -0.29
ECHDC3-203ENST00000422887 MARCH10Q8NA82 808 aaPredicted RBP13.21□□□□□ -0.29
ECHDC3-203ENST00000422887 RUNDC1Q96C34 613 aa13.21□□□□□ -0.29
ECHDC3-203ENST00000422887 PLEKHF1Q96S99 279 aa13.21□□□□□ -0.29
ECHDC3-203ENST00000422887 KDM6AO15550 1401 aaPredicted RBP13.21□□□□□ -0.3
ECHDC3-203ENST00000422887 C1orf141Q5JVX7 400 aa13.2□□□□□ -0.3
ECHDC3-203ENST00000422887 ZNF530Q6P9A1 599 aaPredicted RBP13.2□□□□□ -0.3
ECHDC3-203ENST00000422887 PHKG2P15735 406 aa13.19□□□□□ -0.3
ECHDC3-203ENST00000422887 AKAP4Q5JQC9 854 aa13.19□□□□□ -0.3
ECHDC3-203ENST00000422887 TJP1Q07157 1748 aa13.19□□□□□ -0.3
ECHDC3-203ENST00000422887 MAP3K5Q99683 1374 aa13.19□□□□□ -0.3
ECHDC3-203ENST00000422887 C5P01031 1676 aa13.18□□□□□ -0.3
ECHDC3-203ENST00000422887 CYP27B1O15528 508 aa13.18□□□□□ -0.3
ECHDC3-203ENST00000422887 NKX1-1Q15270 411 aaPredicted RBP13.18□□□□□ -0.3
ECHDC3-203ENST00000422887 MTHFSDQ2M296 383 aaKnown RBP13.18□□□□□ -0.3
ECHDC3-203ENST00000422887 FAM196AQ6ZSG2 479 aa13.18□□□□□ -0.3
ECHDC3-203ENST00000422887 DDX54Q8TDD1 881 aaKnown RBP13.18□□□□□ -0.3
ECHDC3-203ENST00000422887 HTATSF1O43719 755 aaKnown RBP13.17□□□□□ -0.3
ECHDC3-203ENST00000422887 LMOD3Q0VAK6 560 aa13.17□□□□□ -0.3
ECHDC3-203ENST00000422887 NFE2L2Q16236 605 aa13.17□□□□□ -0.3
ECHDC3-203ENST00000422887 NCBP3Q53F19 620 aaKnown RBP13.17□□□□□ -0.3
ECHDC3-203ENST00000422887 FAM9BQ8IZU0 186 aa13.17□□□□□ -0.3
ECHDC3-203ENST00000422887 DCAF5Q96JK2 942 aa13.17□□□□□ -0.3
ECHDC3-203ENST00000422887 PHACTR3Q96KR7 559 aa13.17□□□□□ -0.3
ECHDC3-203ENST00000422887 GNAT3A8MTJ3 354 aa13.16□□□□□ -0.3
ECHDC3-203ENST00000422887 NGEFQ8N5V2 710 aa13.16□□□□□ -0.3
ECHDC3-203ENST00000422887 MYH14Q7Z406 1995 aaKnown RBP13.16□□□□□ -0.3
ECHDC3-203ENST00000422887 LAMB4A4D0S4 1761 aa13.15□□□□□ -0.3
ECHDC3-203ENST00000422887 UBR3Q6ZT12 1888 aa13.15□□□□□ -0.3
ECHDC3-203ENST00000422887 FAM182BQ5T319 152 aa13.15□□□□□ -0.3
ECHDC3-203ENST00000422887 CCDC146Q8IYE0 955 aa13.15□□□□□ -0.3
ECHDC3-203ENST00000422887 COL24A1Q17RW2 1714 aa13.14□□□□□ -0.31
ECHDC3-203ENST00000422887 TMPOP42166 694 aaKnown RBP13.14□□□□□ -0.31
ECHDC3-203ENST00000422887 RTF1Q92541 710 aaKnown RBP13.14□□□□□ -0.31
ECHDC3-203ENST00000422887 CEMIPQ8WUJ3 1361 aa13.13□□□□□ -0.31
ECHDC3-203ENST00000422887 ERVV-2B6SEH9 535 aa13.13□□□□□ -0.31
ECHDC3-203ENST00000422887 UPF1Q92900 1129 aaKnown RBP eCLIP13.13□□□□□ -0.31
ECHDC3-203ENST00000422887 PTF1AQ7RTS3 328 aa13.12□□□□□ -0.31
ECHDC3-203ENST00000422887 KCPQ6ZWJ8 1503 aa13.12□□□□□ -0.31
ECHDC3-203ENST00000422887 APAF1O14727 1248 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms