RNA–Protein interactions for RNA: ENST00000418882.2

HMGB1P49-201, Transcript of high mobility group box 1 pseudogene 49, humanhuman

BASIC

Gene HMGB1P49, Length 569 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P49-201ENST00000418882 NCOA4Q13772 614 aa9.25□□□□□ -0.93
HMGB1P49-201ENST00000418882 CCDC125Q86Z20 511 aa9.25□□□□□ -0.93
HMGB1P49-201ENST00000418882 ZNF395Q9H8N7 513 aaPredicted RBP9.25□□□□□ -0.93
HMGB1P49-201ENST00000418882 TFIP11Q9UBB9 837 aaKnown RBP9.25□□□□□ -0.93
HMGB1P49-201ENST00000418882 PALM3A6NDB9 673 aaPredicted RBP9.24□□□□□ -0.93
HMGB1P49-201ENST00000418882 SNRPBP14678 240 aaKnown RBP9.24□□□□□ -0.93
HMGB1P49-201ENST00000418882 MAP7D1Q3KQU3 841 aa9.24□□□□□ -0.93
HMGB1P49-201ENST00000418882 PPP1R12CQ9BZL4 782 aa9.24□□□□□ -0.93
HMGB1P49-201ENST00000418882 USP17L3A6NCW0 530 aa9.23□□□□□ -0.93
HMGB1P49-201ENST00000418882 USP17L4A6NCW7 530 aa9.23□□□□□ -0.93
HMGB1P49-201ENST00000418882 PTGIRP43119 386 aa9.23□□□□□ -0.93
HMGB1P49-201ENST00000418882 CFAP70Q5T0N1 1121 aa9.23□□□□□ -0.93
HMGB1P49-201ENST00000418882 USP17L2Q6R6M4 530 aa9.23□□□□□ -0.93
HMGB1P49-201ENST00000418882 USP17L1Q7RTZ2 530 aa9.23□□□□□ -0.93
HMGB1P49-201ENST00000418882 TSEN34Q9BSV6 310 aaKnown RBP9.23□□□□□ -0.93
HMGB1P49-201ENST00000418882 RAB6BQ9NRW1 208 aa9.23□□□□□ -0.93
HMGB1P49-201ENST00000418882 MAFBQ9Y5Q3 323 aaPredicted RBP9.23□□□□□ -0.93
HMGB1P49-201ENST00000418882 SOBPA7XYQ1 873 aa9.22□□□□□ -0.93
HMGB1P49-201ENST00000418882 ATP5J2-PTCD1G3V325 749 aa9.22□□□□□ -0.93
HMGB1P49-201ENST00000418882 SPINT1O43278 529 aa9.22□□□□□ -0.93
HMGB1P49-201ENST00000418882 BMP2P12643 396 aa9.22□□□□□ -0.93
HMGB1P49-201ENST00000418882 TRIM47Q96LD4 638 aa9.22□□□□□ -0.93
HMGB1P49-201ENST00000418882 INSM2Q96T92 566 aaPredicted RBP9.22□□□□□ -0.93
HMGB1P49-201ENST00000418882 CTSOP43234 321 aaPredicted RBP9.21□□□□□ -0.94
HMGB1P49-201ENST00000418882 PLEKHM2Q8IWE5 1019 aa9.21□□□□□ -0.94
HMGB1P49-201ENST00000418882 ARHGEF10LQ9HCE6 1279 aa9.21□□□□□ -0.94
HMGB1P49-201ENST00000418882 PCDHGA11Q9Y5H2 935 aa9.21□□□□□ -0.94
HMGB1P49-201ENST00000418882 A0A1W2PRU2 124 aa9.2□□□□□ -0.94
HMGB1P49-201ENST00000418882 MYCP01106 439 aaPredicted RBP9.2□□□□□ -0.94
HMGB1P49-201ENST00000418882 USP4Q13107 963 aa9.2□□□□□ -0.94
HMGB1P49-201ENST00000418882 SCARF1Q14162 830 aa9.2□□□□□ -0.94
HMGB1P49-201ENST00000418882 EML3Q32P44 896 aa9.2□□□□□ -0.94
HMGB1P49-201ENST00000418882 FOXD4L5Q5VV16 416 aaPredicted RBP9.2□□□□□ -0.94
HMGB1P49-201ENST00000418882 SOS2Q07890 1332 aaPredicted RBP9.2□□□□□ -0.94
HMGB1P49-201ENST00000418882 SUPT5HO00267 1087 aaKnown RBP9.19□□□□□ -0.94
HMGB1P49-201ENST00000418882 IL2RAP01589 272 aa9.19□□□□□ -0.94
HMGB1P49-201ENST00000418882 CYP2U1Q7Z449 544 aa9.19□□□□□ -0.94
HMGB1P49-201ENST00000418882 DNMT3LQ9UJW3 386 aa9.19□□□□□ -0.94
HMGB1P49-201ENST00000418882 KIAA1024Q9UPX6 916 aa9.19□□□□□ -0.94
HMGB1P49-201ENST00000418882 C11orf95C9JLR9 678 aaPredicted RBP9.18□□□□□ -0.94
HMGB1P49-201ENST00000418882 UPP2O95045 317 aa9.18□□□□□ -0.94
HMGB1P49-201ENST00000418882 SCNN1DP51172 638 aa9.18□□□□□ -0.94
HMGB1P49-201ENST00000418882 CLDN10P78369 228 aa9.18□□□□□ -0.94
HMGB1P49-201ENST00000418882 ZNF787Q6DD87 383 aa9.18□□□□□ -0.94
HMGB1P49-201ENST00000418882 ETNK1Q9HBU6 452 aa9.18□□□□□ -0.94
HMGB1P49-201ENST00000418882 LMOD1P29536 600 aaPredicted RBP9.17□□□□□ -0.94
HMGB1P49-201ENST00000418882 GTF2IP78347 998 aa9.17□□□□□ -0.94
HMGB1P49-201ENST00000418882 KANK4Q5T7N3 995 aaPredicted RBP9.17□□□□□ -0.94
HMGB1P49-201ENST00000418882 CCDC82Q8N4S0 544 aa9.17□□□□□ -0.94
HMGB1P49-201ENST00000418882 SENP2Q9HC62 589 aa9.17□□□□□ -0.94
HMGB1P49-201ENST00000418882 HRH3Q9Y5N1 445 aa9.17□□□□□ -0.94
HMGB1P49-201ENST00000418882 TMEM229AB2RXF0 380 aa9.16□□□□□ -0.94
HMGB1P49-201ENST00000418882 MEN1O00255 615 aa9.16□□□□□ -0.94
HMGB1P49-201ENST00000418882 ZBTB7BO15156 539 aaPredicted RBP9.16□□□□□ -0.94
HMGB1P49-201ENST00000418882 GNRH1P01148 92 aa9.16□□□□□ -0.94
HMGB1P49-201ENST00000418882 RNF217Q8TC41 542 aa9.16□□□□□ -0.94
HMGB1P49-201ENST00000418882 POLMQ9NP87 494 aaPredicted RBP9.16□□□□□ -0.94
HMGB1P49-201ENST00000418882 MKRN1Q9UHC7 482 aaKnown RBP9.16□□□□□ -0.94
HMGB1P49-201ENST00000418882 NOD1Q9Y239 953 aa9.16□□□□□ -0.94
HMGB1P49-201ENST00000418882 FIGNL2A6NMB9 653 aa9.15□□□□□ -0.94
HMGB1P49-201ENST00000418882 TTLL8A6PVC2 850 aa9.15□□□□□ -0.94
HMGB1P49-201ENST00000418882 LZTS3O60299 673 aaPredicted RBP9.15□□□□□ -0.94
HMGB1P49-201ENST00000418882 RFX1P22670 979 aa9.15□□□□□ -0.94
HMGB1P49-201ENST00000418882 CLN3Q13286 438 aa9.15□□□□□ -0.94
HMGB1P49-201ENST00000418882 KIFC2Q96AC6 838 aa9.15□□□□□ -0.94
HMGB1P49-201ENST00000418882 DKK1O94907 266 aa9.14□□□□□ -0.95
HMGB1P49-201ENST00000418882 GDF10P55107 478 aa9.14□□□□□ -0.95
HMGB1P49-201ENST00000418882 SIRT1Q96EB6 747 aa9.14□□□□□ -0.95
HMGB1P49-201ENST00000418882 ESF1Q9H501 851 aaKnown RBP9.14□□□□□ -0.95
HMGB1P49-201ENST00000418882 SRPK2P78362 688 aaKnown RBP9.13□□□□□ -0.95
HMGB1P49-201ENST00000418882 CRTC2Q53ET0 693 aaPredicted RBP9.13□□□□□ -0.95
HMGB1P49-201ENST00000418882 CDCA8Q53HL2 280 aa9.13□□□□□ -0.95
HMGB1P49-201ENST00000418882 CNKSR1Q969H4 720 aa9.13□□□□□ -0.95
HMGB1P49-201ENST00000418882 XAGE2Q96GT9 111 aa9.13□□□□□ -0.95
HMGB1P49-201ENST00000418882 RNF144AP50876 292 aaPredicted RBP9.12□□□□□ -0.95
HMGB1P49-201ENST00000418882 ERICH6Q7L0X2 663 aa9.12□□□□□ -0.95
HMGB1P49-201ENST00000418882 OGFOD1Q8N543 542 aa9.12□□□□□ -0.95
HMGB1P49-201ENST00000418882 ESYT1Q9BSJ8 1104 aa9.12□□□□□ -0.95
HMGB1P49-201ENST00000418882 FHDC1Q9C0D6 1143 aaPredicted RBP9.12□□□□□ -0.95
HMGB1P49-201ENST00000418882 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.11□□□□□ -0.95
HMGB1P49-201ENST00000418882 MAN1A2O60476 641 aa9.11□□□□□ -0.95
HMGB1P49-201ENST00000418882 INHAP05111 366 aa9.11□□□□□ -0.95
HMGB1P49-201ENST00000418882 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.11□□□□□ -0.95
HMGB1P49-201ENST00000418882 TRIM52Q96A61 297 aa9.11□□□□□ -0.95
HMGB1P49-201ENST00000418882 ZNF594Q96JF6 807 aaPredicted RBP9.11□□□□□ -0.95
HMGB1P49-201ENST00000418882 CENPCQ03188 943 aa9.1□□□□□ -0.95
HMGB1P49-201ENST00000418882 TPCN2Q8NHX9 752 aa9.1□□□□□ -0.95
HMGB1P49-201ENST00000418882 CCDC97Q96F63 343 aaPredicted RBP9.1□□□□□ -0.95
HMGB1P49-201ENST00000418882 GRIP2Q9C0E4 1043 aa9.1□□□□□ -0.95
HMGB1P49-201ENST00000418882 DNAAF2Q9NVR5 837 aaKnown RBP9.1□□□□□ -0.95
HMGB1P49-201ENST00000418882 ZNF358Q9NW07 568 aa9.1□□□□□ -0.95
HMGB1P49-201ENST00000418882 SERTAD1Q9UHV2 236 aa9.1□□□□□ -0.95
HMGB1P49-201ENST00000418882 WASLO00401 505 aaPredicted RBP9.09□□□□□ -0.95
HMGB1P49-201ENST00000418882 PSME1Q06323 249 aa9.09□□□□□ -0.95
HMGB1P49-201ENST00000418882 PTK7Q13308 1070 aa9.09□□□□□ -0.95
HMGB1P49-201ENST00000418882 PRICKLE2Q7Z3G6 844 aa9.09□□□□□ -0.95
HMGB1P49-201ENST00000418882 TRIM50Q86XT4 487 aa9.09□□□□□ -0.95
HMGB1P49-201ENST00000418882 NLRP3Q96P20 1036 aa9.09□□□□□ -0.95
HMGB1P49-201ENST00000418882 SERPINA10Q9UK55 444 aa9.09□□□□□ -0.95
HMGB1P49-201ENST00000418882 USP3Q9Y6I4 520 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms