RNA–Protein interactions for RNA: ENST00000418170.5

HMGXB4-202, Transcript of HMG-box containing 4, humanhuman

TSL 1 (best)

Gene HMGXB4, Length 4,216 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-202ENST00000418170 C17orf53Q8N3J3 647 aaPredicted RBP9.77□□□□□ -0.85
HMGXB4-202ENST00000418170 DIAPH3Q9NSV4 1193 aa9.77□□□□□ -0.85
HMGXB4-202ENST00000418170 NRXN3Q9Y4C0 1643 aa9.76□□□□□ -0.85
HMGXB4-202ENST00000418170 ARHGEF40Q8TER5 1519 aa9.76□□□□□ -0.85
HMGXB4-202ENST00000418170 INTS3Q68E01 1043 aaKnown RBP9.76□□□□□ -0.85
HMGXB4-202ENST00000418170 PLEKHM2Q8IWE5 1019 aa9.76□□□□□ -0.85
HMGXB4-202ENST00000418170 CTIFO43310 598 aaKnown RBP9.76□□□□□ -0.85
HMGXB4-202ENST00000418170 SETBP1Q9Y6X0 1596 aa9.75□□□□□ -0.85
HMGXB4-202ENST00000418170 SLC12A5Q9H2X9 1139 aa9.75□□□□□ -0.85
HMGXB4-202ENST00000418170 C1orf115Q9H7X2 142 aa9.75□□□□□ -0.85
HMGXB4-202ENST00000418170 USP25Q9UHP3 1055 aa9.75□□□□□ -0.85
HMGXB4-202ENST00000418170 BRD1O95696 1058 aa9.75□□□□□ -0.85
HMGXB4-202ENST00000418170 TTC22Q5TAA0 569 aa9.75□□□□□ -0.85
HMGXB4-202ENST00000418170 MPNDQ8N594 471 aa9.75□□□□□ -0.85
HMGXB4-202ENST00000418170 ANKRD36BQ8N2N9 1353 aa9.75□□□□□ -0.85
HMGXB4-202ENST00000418170 AGLP35573 1532 aa9.75□□□□□ -0.85
HMGXB4-202ENST00000418170 IPO4Q8TEX9 1081 aaKnown RBP9.75□□□□□ -0.85
HMGXB4-202ENST00000418170 BCL11BQ9C0K0 894 aaPredicted RBP9.75□□□□□ -0.85
HMGXB4-202ENST00000418170 PTCH1Q13635 1447 aa9.74□□□□□ -0.85
HMGXB4-202ENST00000418170 RIOK3O14730 519 aaKnown RBP9.74□□□□□ -0.85
HMGXB4-202ENST00000418170 ADCY5O95622 1261 aa9.74□□□□□ -0.85
HMGXB4-202ENST00000418170 CHAF1AQ13111 956 aaPredicted RBP9.74□□□□□ -0.85
HMGXB4-202ENST00000418170 ZNF428Q96B54 188 aa9.74□□□□□ -0.85
HMGXB4-202ENST00000418170 OGFRQ9NZT2 677 aa9.74□□□□□ -0.85
HMGXB4-202ENST00000418170 CGNQ9P2M7 1197 aaKnown RBP9.74□□□□□ -0.85
HMGXB4-202ENST00000418170 NSD2O96028 1365 aa9.74□□□□□ -0.85
HMGXB4-202ENST00000418170 IGSF3O75054 1194 aa9.74□□□□□ -0.85
HMGXB4-202ENST00000418170 GABPB1Q06547 395 aaPredicted RBP9.74□□□□□ -0.85
HMGXB4-202ENST00000418170 QRICH2Q9H0J4 1663 aa9.74□□□□□ -0.85
HMGXB4-202ENST00000418170 ZNF771Q7L3S4 317 aaPredicted RBP9.74□□□□□ -0.85
HMGXB4-202ENST00000418170 KIAA1524Q8TCG1 905 aa9.74□□□□□ -0.85
HMGXB4-202ENST00000418170 FOXD4L5Q5VV16 416 aaPredicted RBP9.74□□□□□ -0.85
HMGXB4-202ENST00000418170 FOXD4L4Q8WXT5 416 aaPredicted RBP9.74□□□□□ -0.85
HMGXB4-202ENST00000418170 ARHGAP45Q92619 1136 aa9.73□□□□□ -0.85
HMGXB4-202ENST00000418170 ADGRF5Q8IZF2 1346 aa9.72□□□□□ -0.85
HMGXB4-202ENST00000418170 COL3A1P02461 1466 aaPredicted RBP9.72□□□□□ -0.85
HMGXB4-202ENST00000418170 KNDC1Q76NI1 1749 aa9.72□□□□□ -0.85
HMGXB4-202ENST00000418170 TCHHQ07283 1943 aa9.72□□□□□ -0.85
HMGXB4-202ENST00000418170 REC8O95072 547 aa9.72□□□□□ -0.85
HMGXB4-202ENST00000418170 RAPGEF3O95398 923 aa9.72□□□□□ -0.85
HMGXB4-202ENST00000418170 CASC1Q6TDU7 716 aa9.72□□□□□ -0.85
HMGXB4-202ENST00000418170 TMX3Q96JJ7 454 aa9.72□□□□□ -0.85
HMGXB4-202ENST00000418170 SYCP1Q15431 976 aa9.71□□□□□ -0.85
HMGXB4-202ENST00000418170 ABCC4O15439 1325 aa9.71□□□□□ -0.85
HMGXB4-202ENST00000418170 SPATA31D1Q6ZQQ2 1576 aa9.71□□□□□ -0.85
HMGXB4-202ENST00000418170 CUL4AQ13619 759 aa9.71□□□□□ -0.85
HMGXB4-202ENST00000418170 KDM4AO75164 1064 aa9.71□□□□□ -0.86
HMGXB4-202ENST00000418170 PDIA4P13667 645 aaKnown RBP9.71□□□□□ -0.86
HMGXB4-202ENST00000418170 MCM2P49736 904 aa9.71□□□□□ -0.86
HMGXB4-202ENST00000418170 U2SURPO15042 1029 aaKnown RBP9.71□□□□□ -0.86
HMGXB4-202ENST00000418170 GADD45BO75293 160 aaPredicted RBP9.71□□□□□ -0.86
HMGXB4-202ENST00000418170 TPM3P06753 285 aa9.71□□□□□ -0.86
HMGXB4-202ENST00000418170 NCBP1Q09161 790 aaKnown RBP9.71□□□□□ -0.86
HMGXB4-202ENST00000418170 DCTPP1Q9H773 170 aa9.71□□□□□ -0.86
HMGXB4-202ENST00000418170 CTNNA3Q9UI47 895 aa9.71□□□□□ -0.86
HMGXB4-202ENST00000418170 SLFN14P0C7P3 912 aa9.7□□□□□ -0.86
HMGXB4-202ENST00000418170 SDSP20132 328 aa9.7□□□□□ -0.86
HMGXB4-202ENST00000418170 CCDC183Q5T5S1 534 aa9.7□□□□□ -0.86
HMGXB4-202ENST00000418170 MRPL50Q8N5N7 158 aaKnown RBP9.7□□□□□ -0.86
HMGXB4-202ENST00000418170 KCNF1Q9H3M0 494 aa9.7□□□□□ -0.86
HMGXB4-202ENST00000418170 HCLS1P14317 486 aaPredicted RBP9.7□□□□□ -0.86
HMGXB4-202ENST00000418170 INTS4Q96HW7 963 aaKnown RBP9.7□□□□□ -0.86
HMGXB4-202ENST00000418170 PYCARDQ9ULZ3 195 aa9.7□□□□□ -0.86
HMGXB4-202ENST00000418170 ZBTB22O15209 634 aa9.7□□□□□ -0.86
HMGXB4-202ENST00000418170 DDX41Q9UJV9 622 aaKnown RBP9.69□□□□□ -0.86
HMGXB4-202ENST00000418170 VGLL3A8MV65 326 aa9.69□□□□□ -0.86
HMGXB4-202ENST00000418170 NEK4P51957 841 aa9.69□□□□□ -0.86
HMGXB4-202ENST00000418170 USP48Q86UV5 1035 aa9.69□□□□□ -0.86
HMGXB4-202ENST00000418170 TMEM87AQ8NBN3 555 aa9.69□□□□□ -0.86
HMGXB4-202ENST00000418170 ERC2O15083 957 aa9.69□□□□□ -0.86
HMGXB4-202ENST00000418170 CDK11BP21127 795 aaKnown RBP9.69□□□□□ -0.86
HMGXB4-202ENST00000418170 CYB5RLQ6IPT4 315 aa9.69□□□□□ -0.86
HMGXB4-202ENST00000418170 C16orf71Q8IYS4 520 aaPredicted RBP9.69□□□□□ -0.86
HMGXB4-202ENST00000418170 KLHL34Q8N239 644 aa9.69□□□□□ -0.86
HMGXB4-202ENST00000418170 IRX5P78411 483 aaPredicted RBP9.68□□□□□ -0.86
HMGXB4-202ENST00000418170 MX1P20591 662 aa9.68□□□□□ -0.86
HMGXB4-202ENST00000418170 SLC20A2Q08357 652 aa9.68□□□□□ -0.86
HMGXB4-202ENST00000418170 GDPD2Q9HCC8 539 aa9.68□□□□□ -0.86
HMGXB4-202ENST00000418170 MORC2Q9Y6X9 1032 aaPredicted RBP9.68□□□□□ -0.86
HMGXB4-202ENST00000418170 CCDC66A2RUB6 948 aa9.68□□□□□ -0.86
HMGXB4-202ENST00000418170 VAMP4O75379 141 aa9.68□□□□□ -0.86
HMGXB4-202ENST00000418170 UBR1Q8IWV7 1749 aa9.68□□□□□ -0.86
HMGXB4-202ENST00000418170 SMARCA5O60264 1052 aaPredicted RBP9.67□□□□□ -0.86
HMGXB4-202ENST00000418170 OTUD7AQ8TE49 926 aaPredicted RBP9.67□□□□□ -0.86
HMGXB4-202ENST00000418170 KIF24Q5T7B8 1368 aa9.67□□□□□ -0.86
HMGXB4-202ENST00000418170 KCNJ4P48050 445 aa9.67□□□□□ -0.86
HMGXB4-202ENST00000418170 TERF2Q15554 542 aa9.67□□□□□ -0.86
HMGXB4-202ENST00000418170 FUCA2Q9BTY2 467 aa9.67□□□□□ -0.86
HMGXB4-202ENST00000418170 WDR33Q9C0J8 1336 aaKnown RBP9.66□□□□□ -0.86
HMGXB4-202ENST00000418170 GOLGA6L6A8MZA4 724 aa9.66□□□□□ -0.86
HMGXB4-202ENST00000418170 RTL1A6NKG5 1358 aa9.66□□□□□ -0.86
HMGXB4-202ENST00000418170 SMTNL1A8MU46 457 aa9.66□□□□□ -0.86
HMGXB4-202ENST00000418170 AP5Z1O43299 807 aa9.66□□□□□ -0.86
HMGXB4-202ENST00000418170 PUS7Q96PZ0 661 aaKnown RBP9.66□□□□□ -0.86
HMGXB4-202ENST00000418170 TRAK1Q9UPV9 953 aa9.66□□□□□ -0.86
HMGXB4-202ENST00000418170 ANKRD26Q9UPS8 1709 aa9.66□□□□□ -0.86
HMGXB4-202ENST00000418170 PTPRMP28827 1452 aa9.66□□□□□ -0.86
HMGXB4-202ENST00000418170 RPAP1Q9BWH6 1393 aaPredicted RBP9.66□□□□□ -0.86
HMGXB4-202ENST00000418170 ATP10DQ9P241 1426 aa9.66□□□□□ -0.86
HMGXB4-202ENST00000418170 KIF18AQ8NI77 898 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms