RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 PKD1L3Q7Z443 1732 aa16.9■□□□□ 0.3
SKA1-203ENST00000417656 PDE3BQ13370 1112 aa16.89■□□□□ 0.29
SKA1-203ENST00000417656 TNS1Q9HBL0 1735 aaKnown RBP16.88■□□□□ 0.29
SKA1-203ENST00000417656 PPP2R1AP30153 589 aa16.88■□□□□ 0.29
SKA1-203ENST00000417656 EYA1Q99502 592 aa16.88■□□□□ 0.29
SKA1-203ENST00000417656 UPF1Q92900 1129 aaKnown RBP eCLIP16.87■□□□□ 0.292e-46■■□□□ 12.7
SKA1-203ENST00000417656 IGSF1Q8N6C5 1336 aa16.87■□□□□ 0.29
SKA1-203ENST00000417656 SBF2Q86WG5 1849 aa16.86■□□□□ 0.29
SKA1-203ENST00000417656 IL13P35225 146 aa16.85■□□□□ 0.29
SKA1-203ENST00000417656 RAPGEF4Q8WZA2 1011 aa16.85■□□□□ 0.29
SKA1-203ENST00000417656 EXOC5O00471 708 aa16.84■□□□□ 0.29
SKA1-203ENST00000417656 MARCH10Q8NA82 808 aaPredicted RBP16.84■□□□□ 0.29
SKA1-203ENST00000417656 DOT1LQ8TEK3 1739 aa16.84■□□□□ 0.29
SKA1-203ENST00000417656 TATP17735 454 aaPredicted RBP16.83■□□□□ 0.28
SKA1-203ENST00000417656 NHSQ6T4R5 1651 aa16.83■□□□□ 0.28
SKA1-203ENST00000417656 DIAPH1O60610 1272 aaKnown RBP16.82■□□□□ 0.28
SKA1-203ENST00000417656 FAM196AQ6ZSG2 479 aa16.82■□□□□ 0.28
SKA1-203ENST00000417656 AEBP1Q8IUX7 1158 aa16.82■□□□□ 0.28
SKA1-203ENST00000417656 RALBP1Q15311 655 aa16.81■□□□□ 0.28
SKA1-203ENST00000417656 CFAP53Q96M91 514 aa16.81■□□□□ 0.28
SKA1-203ENST00000417656 BCL9O00512 1426 aa16.8■□□□□ 0.28
SKA1-203ENST00000417656 KDRP35968 1356 aa16.8■□□□□ 0.28
SKA1-203ENST00000417656 ZCRB1Q8TBF4 217 aaKnown RBP16.8■□□□□ 0.28
SKA1-203ENST00000417656 TOGARAM1Q9Y4F4 1720 aa16.79■□□□□ 0.28
SKA1-203ENST00000417656 SULT6B1Q6IMI4 303 aa16.79■□□□□ 0.28
SKA1-203ENST00000417656 DDX54Q8TDD1 881 aaKnown RBP16.79■□□□□ 0.28
SKA1-203ENST00000417656 PLEKHG2Q9H7P9 1386 aa16.78■□□□□ 0.28
SKA1-203ENST00000417656 MYBBP1AQ9BQG0 1328 aaKnown RBP16.78■□□□□ 0.28
SKA1-203ENST00000417656 PCDH11XQ9BZA7 1347 aa16.78■□□□□ 0.28
SKA1-203ENST00000417656 PCDH11YQ9BZA8 1340 aa16.78■□□□□ 0.28
SKA1-203ENST00000417656 TRIM37O94972 964 aa16.78■□□□□ 0.28
SKA1-203ENST00000417656 U2SURPO15042 1029 aaKnown RBP16.77■□□□□ 0.28
SKA1-203ENST00000417656 HMOX1P09601 288 aa16.77■□□□□ 0.28
SKA1-203ENST00000417656 PRKRIP1Q9H875 184 aaPredicted RBP16.77■□□□□ 0.28
SKA1-203ENST00000417656 BTAF1O14981 1849 aa16.75■□□□□ 0.27
SKA1-203ENST00000417656 SF3B2Q13435 895 aaKnown RBP16.75■□□□□ 0.27
SKA1-203ENST00000417656 CCDC125Q86Z20 511 aa16.75■□□□□ 0.27
SKA1-203ENST00000417656 SPG7Q9UQ90 795 aa16.75■□□□□ 0.27
SKA1-203ENST00000417656 CYP27B1O15528 508 aa16.74■□□□□ 0.27
SKA1-203ENST00000417656 PTF1AQ7RTS3 328 aa16.74■□□□□ 0.27
SKA1-203ENST00000417656 ACSBG1Q96GR2 724 aa16.74■□□□□ 0.27
SKA1-203ENST00000417656 RGPD3A6NKT7 1758 aaPredicted RBP16.74■□□□□ 0.27
SKA1-203ENST00000417656 RGPD4Q7Z3J3 1758 aa16.74■□□□□ 0.27
SKA1-203ENST00000417656 RREB1Q92766 1687 aa16.73■□□□□ 0.27
SKA1-203ENST00000417656 DEFB132Q7Z7B7 95 aa16.73■□□□□ 0.27
SKA1-203ENST00000417656 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.73■□□□□ 0.27
SKA1-203ENST00000417656 NUDCQ9Y266 331 aa16.72■□□□□ 0.27
SKA1-203ENST00000417656 ITGB4P16144 1822 aa16.71■□□□□ 0.27
SKA1-203ENST00000417656 KCNQ2O43526 872 aa16.71■□□□□ 0.27
SKA1-203ENST00000417656 BAG6P46379 1132 aa16.71■□□□□ 0.27
SKA1-203ENST00000417656 PLEKHO1Q53GL0 409 aaPredicted RBP16.71■□□□□ 0.27
SKA1-203ENST00000417656 ZNF530Q6P9A1 599 aaPredicted RBP16.71■□□□□ 0.27
SKA1-203ENST00000417656 KAT6BQ8WYB5 2073 aa16.7■□□□□ 0.26
SKA1-203ENST00000417656 APBA3O96018 575 aa16.7■□□□□ 0.26
SKA1-203ENST00000417656 U2AF1L5P0DN76 240 aaPredicted RBP16.7■□□□□ 0.26
SKA1-203ENST00000417656 PHKG2P15735 406 aa16.7■□□□□ 0.26
SKA1-203ENST00000417656 U2AF1Q01081 240 aaKnown RBP eCLIP16.7■□□□□ 0.26
SKA1-203ENST00000417656 BCL11BQ9C0K0 894 aaPredicted RBP16.7■□□□□ 0.26
SKA1-203ENST00000417656 VIRMAQ69YN4 1812 aaKnown RBP16.7■□□□□ 0.26
SKA1-203ENST00000417656 NUP188Q5SRE5 1749 aa16.7■□□□□ 0.26
SKA1-203ENST00000417656 AMOTQ4VCS5 1084 aa16.69■□□□□ 0.26
SKA1-203ENST00000417656 IFNL2Q8IZJ0 200 aa16.69■□□□□ 0.26
SKA1-203ENST00000417656 RSPH6AQ9H0K4 717 aa16.69■□□□□ 0.26
SKA1-203ENST00000417656 KDM6AO15550 1401 aaPredicted RBP16.69■□□□□ 0.26
SKA1-203ENST00000417656 PRKAR2BP31323 418 aa16.68■□□□□ 0.26
SKA1-203ENST00000417656 EN1Q05925 392 aaPredicted RBP16.68■□□□□ 0.26
SKA1-203ENST00000417656 SYTL4Q96C24 671 aaPredicted RBP16.68■□□□□ 0.26
SKA1-203ENST00000417656 SCN11AQ9UI33 1791 aa16.68■□□□□ 0.26
SKA1-203ENST00000417656 ANP32CO43423 234 aa16.67■□□□□ 0.26
SKA1-203ENST00000417656 NKX1-1Q15270 411 aaPredicted RBP16.67■□□□□ 0.26
SKA1-203ENST00000417656 ADAMTS7Q9UKP4 1686 aa16.66■□□□□ 0.26
SKA1-203ENST00000417656 PRIM1P49642 420 aaKnown RBP16.66■□□□□ 0.26
SKA1-203ENST00000417656 C1orf141Q5JVX7 400 aa16.66■□□□□ 0.26
SKA1-203ENST00000417656 EZH2Q15910 746 aaKnown RBP16.65■□□□□ 0.26
SKA1-203ENST00000417656 MTHFSDQ2M296 383 aaKnown RBP16.65■□□□□ 0.26
SKA1-203ENST00000417656 LY75O60449 1722 aa16.65■□□□□ 0.26
SKA1-203ENST00000417656 CAMKK2Q96RR4 588 aa16.64■□□□□ 0.25
SKA1-203ENST00000417656 FCHSD2O94868 740 aa16.63■□□□□ 0.25
SKA1-203ENST00000417656 PHACTR3Q96KR7 559 aa16.63■□□□□ 0.25
SKA1-203ENST00000417656 MRC1P22897 1456 aa16.62■□□□□ 0.25
SKA1-203ENST00000417656 HSP90AB1P08238 724 aaKnown RBP16.62■□□□□ 0.25
SKA1-203ENST00000417656 AKAP4Q5JQC9 854 aa16.62■□□□□ 0.25
SKA1-203ENST00000417656 DCAF5Q96JK2 942 aa16.62■□□□□ 0.25
SKA1-203ENST00000417656 DLG5Q8TDM6 1919 aa16.62■□□□□ 0.25
SKA1-203ENST00000417656 MAP3K5Q99683 1374 aa16.62■□□□□ 0.25
SKA1-203ENST00000417656 PAPPAQ13219 1627 aa16.61■□□□□ 0.25
SKA1-203ENST00000417656 CCDC184Q52MB2 194 aa16.61■□□□□ 0.25
SKA1-203ENST00000417656 MPRIPQ6WCQ1 1025 aa16.61■□□□□ 0.25
SKA1-203ENST00000417656 GAS2L2Q8NHY3 880 aa16.61■□□□□ 0.25
SKA1-203ENST00000417656 PLSCR1O15162 318 aa16.6■□□□□ 0.25
SKA1-203ENST00000417656 WDR43Q15061 677 aaKnown RBP eCLIP16.6■□□□□ 0.25
SKA1-203ENST00000417656 TMOD3Q9NYL9 352 aa16.6■□□□□ 0.25
SKA1-203ENST00000417656 SIPA1L3O60292 1781 aaPredicted RBP16.59■□□□□ 0.25
SKA1-203ENST00000417656 TXNRD1Q16881 649 aa16.58■□□□□ 0.24
SKA1-203ENST00000417656 PIGBQ92521 554 aa16.58■□□□□ 0.24
SKA1-203ENST00000417656 PLEKHF1Q96S99 279 aa16.58■□□□□ 0.24
SKA1-203ENST00000417656 U3KPZ7 1027 aaPredicted RBP16.58■□□□□ 0.24
SKA1-203ENST00000417656 MAPK8IP3Q9UPT6 1336 aa16.58■□□□□ 0.24
SKA1-203ENST00000417656 PALLDQ8WX93 1383 aa16.58■□□□□ 0.24
SKA1-203ENST00000417656 ERVV-2B6SEH9 535 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms