RNA–Protein interactions for RNA: ENST00000415497.6

CCND3-205, Transcript of cyclin D3, human

TSL 2 BASIC

Gene CCND3, Length 1,843 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCND3-205	ENST00000415497	RGPD1	P0DJD0	1748 aa		33.12	■■■□□ 2.89
CCND3-205	ENST00000415497	FAM196A	Q6ZSG2	479 aa		33.11	■■■□□ 2.89
CCND3-205	ENST00000415497	UPF1	Q92900	1129 aa	Known RBP eCLIP	33.11	■■■□□ 2.89	7e-15	■■□□□ 14
CCND3-205	ENST00000415497	MARCH10	Q8NA82	808 aa	Predicted RBP	33.1	■■■□□ 2.89
CCND3-205	ENST00000415497	CCDC184	Q52MB2	194 aa		33.08	■■■□□ 2.89
CCND3-205	ENST00000415497	ZCRB1	Q8TBF4	217 aa	Known RBP	33.08	■■■□□ 2.89
CCND3-205	ENST00000415497	MRS2	Q9HD23	443 aa		33.07	■■■□□ 2.89
CCND3-205	ENST00000415497	SULT6B1	Q6IMI4	303 aa		33.07	■■■□□ 2.88
CCND3-205	ENST00000415497	AEBP1	Q8IUX7	1158 aa		33.05	■■■□□ 2.88
CCND3-205	ENST00000415497	KDR	P35968	1356 aa		33.05	■■■□□ 2.88
CCND3-205	ENST00000415497	DDX54	Q8TDD1	881 aa	Known RBP	33.05	■■■□□ 2.88
CCND3-205	ENST00000415497	U2SURP	O15042	1029 aa	Known RBP	33.02	■■■□□ 2.88
CCND3-205	ENST00000415497	SHANK3	Q9BYB0	1731 aa		33.02	■■■□□ 2.88
CCND3-205	ENST00000415497	PLEKHG2	Q9H7P9	1386 aa		33.02	■■■□□ 2.88
CCND3-205	ENST00000415497	BCL9	O00512	1426 aa		33.02	■■■□□ 2.88
CCND3-205	ENST00000415497	CCDC125	Q86Z20	511 aa		33.01	■■■□□ 2.87
CCND3-205	ENST00000415497	NUDC	Q9Y266	331 aa		33.01	■■■□□ 2.87
CCND3-205	ENST00000415497	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	33	■■■□□ 2.87
CCND3-205	ENST00000415497	PKD1L3	Q7Z443	1732 aa		33	■■■□□ 2.87
CCND3-205	ENST00000415497	HMOX1	P09601	288 aa		33	■■■□□ 2.87
CCND3-205	ENST00000415497	PCDH11X	Q9BZA7	1347 aa		32.99	■■■□□ 2.87
CCND3-205	ENST00000415497	PCDH11Y	Q9BZA8	1340 aa		32.99	■■■□□ 2.87
CCND3-205	ENST00000415497	SPG7	Q9UQ90	795 aa		32.99	■■■□□ 2.87
CCND3-205	ENST00000415497	TRIM37	O94972	964 aa		32.97	■■■□□ 2.87
CCND3-205	ENST00000415497	SBF2	Q86WG5	1849 aa		32.94	■■■□□ 2.86
CCND3-205	ENST00000415497	CYP27B1	O15528	508 aa		32.94	■■■□□ 2.86
CCND3-205	ENST00000415497	SF3B2	Q13435	895 aa	Known RBP	32.94	■■■□□ 2.86
CCND3-205	ENST00000415497	AMOT	Q4VCS5	1084 aa		32.93	■■■□□ 2.86
CCND3-205	ENST00000415497	U2AF1L5	P0DN76	240 aa	Predicted RBP	32.92	■■■□□ 2.86
CCND3-205	ENST00000415497	U2AF1	Q01081	240 aa	Known RBP eCLIP	32.92	■■■□□ 2.86
CCND3-205	ENST00000415497	PLEKHO1	Q53GL0	409 aa	Predicted RBP	32.92	■■■□□ 2.86
CCND3-205	ENST00000415497	KAT6B	Q8WYB5	2073 aa		32.9	■■■□□ 2.86
CCND3-205	ENST00000415497	TNS1	Q9HBL0	1735 aa	Known RBP	32.88	■■■□□ 2.85
CCND3-205	ENST00000415497	IFNL2	Q8IZJ0	200 aa		32.88	■■■□□ 2.85
CCND3-205	ENST00000415497	ACSBG1	Q96GR2	724 aa		32.88	■■■□□ 2.85
CCND3-205	ENST00000415497	FAM9B	Q8IZU0	186 aa		32.87	■■■□□ 2.85
CCND3-205	ENST00000415497	YTHDC1	Q96MU7	727 aa	Known RBP	32.87	■■■□□ 2.85
CCND3-205	ENST00000415497	BCL11B	Q9C0K0	894 aa	Predicted RBP	32.87	■■■□□ 2.85
CCND3-205	ENST00000415497	PHKG2	P15735	406 aa		32.86	■■■□□ 2.85
CCND3-205	ENST00000415497	RSPH6A	Q9H0K4	717 aa		32.86	■■■□□ 2.85
CCND3-205	ENST00000415497	KCNQ2	O43526	872 aa		32.85	■■■□□ 2.85
CCND3-205	ENST00000415497	FCHSD2	O94868	740 aa		32.84	■■■□□ 2.85
CCND3-205	ENST00000415497	ZNF530	Q6P9A1	599 aa	Predicted RBP	32.84	■■■□□ 2.85
CCND3-205	ENST00000415497	PTF1A	Q7RTS3	328 aa		32.84	■■■□□ 2.85
CCND3-205	ENST00000415497	NHS	Q6T4R5	1651 aa		32.84	■■■□□ 2.85
CCND3-205	ENST00000415497	NKX1-1	Q15270	411 aa	Predicted RBP	32.84	■■■□□ 2.85
CCND3-205	ENST00000415497	PRKAR2B	P31323	418 aa		32.83	■■■□□ 2.85
CCND3-205	ENST00000415497	BAG6	P46379	1132 aa		32.83	■■■□□ 2.85
CCND3-205	ENST00000415497	APBA3	O96018	575 aa		32.82	■■■□□ 2.84
CCND3-205	ENST00000415497	DEFB132	Q7Z7B7	95 aa		32.82	■■■□□ 2.84
CCND3-205	ENST00000415497	DOT1L	Q8TEK3	1739 aa		32.82	■■■□□ 2.84
CCND3-205	ENST00000415497	PNISR	Q8TF01	805 aa	Known RBP	32.81	■■■□□ 2.84
CCND3-205	ENST00000415497	C1orf141	Q5JVX7	400 aa		32.8	■■■□□ 2.84
CCND3-205	ENST00000415497	SYTL4	Q96C24	671 aa	Predicted RBP	32.8	■■■□□ 2.84
CCND3-205	ENST00000415497	PRIM1	P49642	420 aa	Known RBP	32.79	■■■□□ 2.84
CCND3-205	ENST00000415497	MTHFSD	Q2M296	383 aa	Known RBP	32.79	■■■□□ 2.84
CCND3-205	ENST00000415497	HSP90AB1	P08238	724 aa	Known RBP	32.78	■■■□□ 2.84
CCND3-205	ENST00000415497	EN1	Q05925	392 aa	Predicted RBP	32.77	■■■□□ 2.84
CCND3-205	ENST00000415497	AKAP4	Q5JQC9	854 aa		32.75	■■■□□ 2.83
CCND3-205	ENST00000415497	PHACTR3	Q96KR7	559 aa		32.75	■■■□□ 2.83
CCND3-205	ENST00000415497	TOGARAM1	Q9Y4F4	1720 aa		32.75	■■■□□ 2.83
CCND3-205	ENST00000415497	DCAF5	Q96JK2	942 aa		32.74	■■■□□ 2.83
CCND3-205	ENST00000415497	GAS2L2	Q8NHY3	880 aa		32.74	■■■□□ 2.83
CCND3-205	ENST00000415497	BTAF1	O14981	1849 aa		32.73	■■■□□ 2.83
CCND3-205	ENST00000415497	PLSCR1	O15162	318 aa		32.72	■■■□□ 2.83
CCND3-205	ENST00000415497	WDR43	Q15061	677 aa	Known RBP eCLIP	32.72	■■■□□ 2.83
CCND3-205	ENST00000415497	PNN	Q9H307	717 aa	Known RBP	32.72	■■■□□ 2.83
CCND3-205	ENST00000415497	CAMKK2	Q96RR4	588 aa		32.71	■■■□□ 2.83
CCND3-205	ENST00000415497	KDM6A	O15550	1401 aa	Predicted RBP	32.7	■■■□□ 2.83
CCND3-205	ENST00000415497	NEFM	P07197	916 aa		32.7	■■■□□ 2.83
CCND3-205	ENST00000415497	MPRIP	Q6WCQ1	1025 aa		32.7	■■■□□ 2.82
CCND3-205	ENST00000415497	PLEKHF1	Q96S99	279 aa		32.7	■■■□□ 2.82
CCND3-205	ENST00000415497	ITGB4	P16144	1822 aa		32.69	■■■□□ 2.82
CCND3-205	ENST00000415497	EZH2	Q15910	746 aa	Known RBP	32.69	■■■□□ 2.82
CCND3-205	ENST00000415497	RGPD3	A6NKT7	1758 aa	Predicted RBP	32.67	■■■□□ 2.82
CCND3-205	ENST00000415497	RGPD4	Q7Z3J3	1758 aa		32.67	■■■□□ 2.82
CCND3-205	ENST00000415497	ERVV-2	B6SEH9	535 aa		32.67	■■■□□ 2.82
CCND3-205	ENST00000415497	TMOD3	Q9NYL9	352 aa		32.65	■■■□□ 2.82
CCND3-205	ENST00000415497	ADAMTS8	Q9UP79	889 aa		32.65	■■■□□ 2.82
CCND3-205	ENST00000415497	MAP3K5	Q99683	1374 aa		32.65	■■■□□ 2.82
CCND3-205	ENST00000415497	GNAT3	A8MTJ3	354 aa		32.64	■■■□□ 2.82
CCND3-205	ENST00000415497	PIGB	Q92521	554 aa		32.64	■■■□□ 2.82
CCND3-205	ENST00000415497	SCN11A	Q9UI33	1791 aa		32.64	■■■□□ 2.82
CCND3-205	ENST00000415497	MAPK8IP3	Q9UPT6	1336 aa		32.63	■■■□□ 2.81
CCND3-205	ENST00000415497	LGR6	Q9HBX8	967 aa		32.62	■■■□□ 2.81
CCND3-205	ENST00000415497	RNMT	O43148	476 aa	Known RBP	32.61	■■■□□ 2.81
CCND3-205	ENST00000415497	CABP4	P57796	275 aa		32.61	■■■□□ 2.81
CCND3-205	ENST00000415497	VIRMA	Q69YN4	1812 aa	Known RBP	32.59	■■■□□ 2.81
CCND3-205	ENST00000415497	ADAMTS7	Q9UKP4	1686 aa		32.59	■■■□□ 2.81
CCND3-205	ENST00000415497	TXNRD1	Q16881	649 aa		32.58	■■■□□ 2.81
CCND3-205	ENST00000415497	PROM2	Q8N271	834 aa		32.58	■■■□□ 2.81
CCND3-205	ENST00000415497	RREB1	Q92766	1687 aa		32.58	■■■□□ 2.81
CCND3-205	ENST00000415497	HNRNPU	Q00839	825 aa	Known RBP eCLIP	32.58	■■■□□ 2.81
CCND3-205	ENST00000415497	CCDC146	Q8IYE0	955 aa		32.57	■■■□□ 2.8
CCND3-205	ENST00000415497	NFATC2IP	Q8NCF5	419 aa		32.57	■■■□□ 2.8
CCND3-205	ENST00000415497	IL17RE	Q8NFR9	667 aa		32.56	■■■□□ 2.8
CCND3-205	ENST00000415497	SLC52A2	Q9HAB3	445 aa		32.56	■■■□□ 2.8
CCND3-205	ENST00000415497	NFE2L2	Q16236	605 aa		32.55	■■■□□ 2.8
CCND3-205	ENST00000415497	RTF1	Q92541	710 aa	Known RBP	32.55	■■■□□ 2.8
CCND3-205	ENST00000415497	RUNDC1	Q96C34	613 aa		32.55	■■■□□ 2.8

Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms