RNA–Protein interactions for RNA: ENST00000410044.5

LSM5-207, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3 BASIC

Gene LSM5, Length 687 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-207ENST00000410044 FAM9BQ8IZU0 186 aa20.22■□□□□ 0.83
LSM5-207ENST00000410044 PARP4Q9UKK3 1724 aaKnown RBP20.21■□□□□ 0.83
LSM5-207ENST00000410044 MEGF6O75095 1541 aa20.21■□□□□ 0.83
LSM5-207ENST00000410044 OVOS2A0A0G2JMS6 1433 aa20.2■□□□□ 0.82
LSM5-207ENST00000410044 AMOTQ4VCS5 1084 aa20.2■□□□□ 0.82
LSM5-207ENST00000410044 RUNDC1Q96C34 613 aa20.2■□□□□ 0.82
LSM5-207ENST00000410044 RXRBP28702 533 aa20.19■□□□□ 0.82
LSM5-207ENST00000410044 FAM98CQ17RN3 349 aaKnown RBP20.19■□□□□ 0.82
LSM5-207ENST00000410044 PLEKHO1Q53GL0 409 aaPredicted RBP20.19■□□□□ 0.82
LSM5-207ENST00000410044 PHACTR3Q96KR7 559 aa20.19■□□□□ 0.82
LSM5-207ENST00000410044 THSD7AQ9UPZ6 1657 aa20.19■□□□□ 0.82
LSM5-207ENST00000410044 PKD1L3Q7Z443 1732 aa20.18■□□□□ 0.82
LSM5-207ENST00000410044 EXOC5O00471 708 aa20.17■□□□□ 0.82
LSM5-207ENST00000410044 ZCRB1Q8TBF4 217 aaKnown RBP20.17■□□□□ 0.82
LSM5-207ENST00000410044 SPG7Q9UQ90 795 aa20.17■□□□□ 0.82
LSM5-207ENST00000410044 NEFMP07197 916 aa20.16■□□□□ 0.82
LSM5-207ENST00000410044 MTHFSDQ2M296 383 aaKnown RBP20.15■□□□□ 0.82
LSM5-207ENST00000410044 NCBP3Q53F19 620 aaKnown RBP20.15■□□□□ 0.82
LSM5-207ENST00000410044 CCDC146Q8IYE0 955 aa20.15■□□□□ 0.82
LSM5-207ENST00000410044 GAS2L2Q8NHY3 880 aa20.15■□□□□ 0.82
LSM5-207ENST00000410044 DDB1Q16531 1140 aa20.14■□□□□ 0.81
LSM5-207ENST00000410044 SEPT12Q8IYM1 358 aa20.14■□□□□ 0.81
LSM5-207ENST00000410044 SHANK3Q9BYB0 1731 aa20.13■□□□□ 0.81
LSM5-207ENST00000410044 MAPK8IP3Q9UPT6 1336 aa20.13■□□□□ 0.81
LSM5-207ENST00000410044 TNS2Q63HR2 1409 aa20.12■□□□□ 0.81
LSM5-207ENST00000410044 TMPOP42166 694 aaKnown RBP20.12■□□□□ 0.81
LSM5-207ENST00000410044 NFE2L2Q16236 605 aa20.12■□□□□ 0.81
LSM5-207ENST00000410044 LRRC37A3O60309 1634 aa20.12■□□□□ 0.81
LSM5-207ENST00000410044 PCDH11XQ9BZA7 1347 aa20.11■□□□□ 0.81
LSM5-207ENST00000410044 PCDH11YQ9BZA8 1340 aa20.11■□□□□ 0.81
LSM5-207ENST00000410044 APAF1O14727 1248 aa20.11■□□□□ 0.81
LSM5-207ENST00000410044 CYP27B1O15528 508 aa20.11■□□□□ 0.81
LSM5-207ENST00000410044 NKX1-1Q15270 411 aaPredicted RBP20.11■□□□□ 0.81
LSM5-207ENST00000410044 IFNL2Q8IZJ0 200 aa20.11■□□□□ 0.81
LSM5-207ENST00000410044 NGEFQ8N5V2 710 aa20.11■□□□□ 0.81
LSM5-207ENST00000410044 HTATSF1O43719 755 aaKnown RBP20.1■□□□□ 0.81
LSM5-207ENST00000410044 PHKG2P15735 406 aa20.1■□□□□ 0.81
LSM5-207ENST00000410044 AKAP4Q5JQC9 854 aa20.1■□□□□ 0.81
LSM5-207ENST00000410044 DLG5Q8TDM6 1919 aa20.1■□□□□ 0.81
LSM5-207ENST00000410044 ZNF530Q6P9A1 599 aaPredicted RBP20.09■□□□□ 0.81
LSM5-207ENST00000410044 BRWD3Q6RI45 1802 aa20.08■□□□□ 0.8
LSM5-207ENST00000410044 GNAT3A8MTJ3 354 aa20.07■□□□□ 0.8
LSM5-207ENST00000410044 PDE3BQ13370 1112 aa20.07■□□□□ 0.8
LSM5-207ENST00000410044 C1orf141Q5JVX7 400 aa20.07■□□□□ 0.8
LSM5-207ENST00000410044 MARCH10Q8NA82 808 aaPredicted RBP20.07■□□□□ 0.8
LSM5-207ENST00000410044 A0A0G2JS52 829 aa20.06■□□□□ 0.8
LSM5-207ENST00000410044 BCL9O00512 1426 aa20.06■□□□□ 0.8
LSM5-207ENST00000410044 RGS12O14924 1447 aa20.06■□□□□ 0.8
LSM5-207ENST00000410044 HSP90AB1P08238 724 aaKnown RBP20.06■□□□□ 0.8
LSM5-207ENST00000410044 RIPK4P57078 832 aa20.06■□□□□ 0.8
LSM5-207ENST00000410044 MYT1Q01538 1121 aa20.06■□□□□ 0.8
LSM5-207ENST00000410044 CCDC27Q2M243 656 aa20.06■□□□□ 0.8
LSM5-207ENST00000410044 DDX54Q8TDD1 881 aaKnown RBP20.06■□□□□ 0.8
LSM5-207ENST00000410044 KRT27Q7Z3Y8 459 aa20.05■□□□□ 0.8
LSM5-207ENST00000410044 MAP3K5Q99683 1374 aa20.05■□□□□ 0.8
LSM5-207ENST00000410044 ADAMTS7Q9UKP4 1686 aa20.04■□□□□ 0.8
LSM5-207ENST00000410044 DCAF5Q96JK2 942 aa20.04■□□□□ 0.8
LSM5-207ENST00000410044 TRIM35Q9UPQ4 493 aa20.04■□□□□ 0.8
LSM5-207ENST00000410044 LMOD3Q0VAK6 560 aa20.03■□□□□ 0.8
LSM5-207ENST00000410044 IL17REQ8NFR9 667 aa20.03■□□□□ 0.8
LSM5-207ENST00000410044 RRP7AQ9Y3A4 280 aaKnown RBP20.03■□□□□ 0.8
LSM5-207ENST00000410044 VIRMAQ69YN4 1812 aaKnown RBP20.02■□□□□ 0.8
LSM5-207ENST00000410044 SCN11AQ9UI33 1791 aa20.02■□□□□ 0.8
LSM5-207ENST00000410044 CEMIPQ8WUJ3 1361 aa20.01■□□□□ 0.79
LSM5-207ENST00000410044 RNMTO43148 476 aaKnown RBP20.01■□□□□ 0.79
LSM5-207ENST00000410044 NEUROD2Q15784 382 aa20.01■□□□□ 0.79
LSM5-207ENST00000410044 RTF1Q92541 710 aaKnown RBP20.01■□□□□ 0.79
LSM5-207ENST00000410044 LGR6Q9HBX8 967 aa20.01■□□□□ 0.79
LSM5-207ENST00000410044 ERVV-2B6SEH9 535 aa20■□□□□ 0.79
LSM5-207ENST00000410044 MPRIPQ6WCQ1 1025 aa20■□□□□ 0.79
LSM5-207ENST00000410044 KDM6AO15550 1401 aaPredicted RBP20■□□□□ 0.79
LSM5-207ENST00000410044 WWC1Q8IX03 1113 aa19.99■□□□□ 0.79
LSM5-207ENST00000410044 FAM196AQ6ZSG2 479 aa19.98■□□□□ 0.79
LSM5-207ENST00000410044 ZNF521Q96K83 1311 aa19.98■□□□□ 0.79
LSM5-207ENST00000410044 WDR63Q8IWG1 891 aa19.97■□□□□ 0.79
LSM5-207ENST00000410044 DCTN1Q14203 1278 aa19.96■□□□□ 0.79
LSM5-207ENST00000410044 MCM10Q7L590 875 aa19.96■□□□□ 0.79
LSM5-207ENST00000410044 SBF2Q86WG5 1849 aa19.96■□□□□ 0.79
LSM5-207ENST00000410044 ITGB4P16144 1822 aa19.95■□□□□ 0.78
LSM5-207ENST00000410044 HNRNPUQ00839 825 aaKnown RBP eCLIP19.95■□□□□ 0.78
LSM5-207ENST00000410044 TOGARAM1Q9Y4F4 1720 aa19.95■□□□□ 0.78
LSM5-207ENST00000410044 KAT6BQ8WYB5 2073 aa19.95■□□□□ 0.78
LSM5-207ENST00000410044 MRC1P22897 1456 aa19.94■□□□□ 0.78
LSM5-207ENST00000410044 FAM182BQ5T319 152 aa19.94■□□□□ 0.78
LSM5-207ENST00000410044 SLC52A2Q9HAB3 445 aa19.94■□□□□ 0.78
LSM5-207ENST00000410044 SIPA1L3O60292 1781 aaPredicted RBP19.93■□□□□ 0.78
LSM5-207ENST00000410044 SENP3-EIF4A1A0A087X0R7 540 aa19.93■□□□□ 0.78
LSM5-207ENST00000410044 CALD1Q05682 793 aaKnown RBP19.93■□□□□ 0.78
LSM5-207ENST00000410044 BABAM1Q9NWV8 329 aa19.93■□□□□ 0.78
LSM5-207ENST00000410044 SALL2Q9Y467 1007 aaPredicted RBP19.93■□□□□ 0.78
LSM5-207ENST00000410044 IL16Q14005 1332 aa19.93■□□□□ 0.78
LSM5-207ENST00000410044 PRIM1P49642 420 aaKnown RBP19.92■□□□□ 0.78
LSM5-207ENST00000410044 CABP4P57796 275 aa19.92■□□□□ 0.78
LSM5-207ENST00000410044 TEFQ10587 303 aa19.92■□□□□ 0.78
LSM5-207ENST00000410044 TAF7Q15545 349 aaPredicted RBP19.92■□□□□ 0.78
LSM5-207ENST00000410044 NFATC2IPQ8NCF5 419 aa19.92■□□□□ 0.78
LSM5-207ENST00000410044 THUMPD2Q9BTF0 503 aaKnown RBP19.92■□□□□ 0.78
LSM5-207ENST00000410044 DOT1LQ8TEK3 1739 aa19.92■□□□□ 0.78
LSM5-207ENST00000410044 ZNF853P0CG23 659 aa19.91■□□□□ 0.78
LSM5-207ENST00000410044 ZBED9Q6R2W3 1325 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms