RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 ERBINQ96RT1 1412 aa7.14□□□□□ -1.27
SCN1A-203ENST00000409050 PATL2C9JE40 543 aaKnown RBP7.14□□□□□ -1.27
SCN1A-203ENST00000409050 STAMBPO95630 424 aa7.14□□□□□ -1.27
SCN1A-203ENST00000409050 PPP4R3BQ5MIZ7 849 aa7.14□□□□□ -1.27
SCN1A-203ENST00000409050 KRI1Q8N9T8 703 aaKnown RBP7.14□□□□□ -1.27
SCN1A-203ENST00000409050 TAOK3Q9H2K8 898 aa7.14□□□□□ -1.27
SCN1A-203ENST00000409050 GOLIM4O00461 696 aa7.14□□□□□ -1.27
SCN1A-203ENST00000409050 GLRX3O76003 335 aaKnown RBP7.14□□□□□ -1.27
SCN1A-203ENST00000409050 MTHFSP49914 203 aa7.14□□□□□ -1.27
SCN1A-203ENST00000409050 PDE4CQ08493 712 aa7.14□□□□□ -1.27
SCN1A-203ENST00000409050 GIGYF2Q6Y7W6 1299 aaKnown RBP7.14□□□□□ -1.27
SCN1A-203ENST00000409050 CNKSR2Q8WXI2 1034 aa7.14□□□□□ -1.27
SCN1A-203ENST00000409050 ADAMTS8Q9UP79 889 aa7.14□□□□□ -1.27
SCN1A-203ENST00000409050 TROQ12816 1431 aaPredicted RBP7.14□□□□□ -1.27
SCN1A-203ENST00000409050 BMP15O95972 392 aa7.14□□□□□ -1.27
SCN1A-203ENST00000409050 TRAF1Q13077 416 aa7.14□□□□□ -1.27
SCN1A-203ENST00000409050 ARHGAP29Q52LW3 1261 aa7.14□□□□□ -1.27
SCN1A-203ENST00000409050 U3KPZ7 1027 aaPredicted RBP7.14□□□□□ -1.27
SCN1A-203ENST00000409050 USO1O60763 962 aaKnown RBP7.14□□□□□ -1.27
SCN1A-203ENST00000409050 ME1P48163 572 aa7.14□□□□□ -1.27
SCN1A-203ENST00000409050 PDRG1Q9NUG6 133 aa7.14□□□□□ -1.27
SCN1A-203ENST00000409050 ARHGAP5Q13017 1502 aa7.14□□□□□ -1.27
SCN1A-203ENST00000409050 SFPQP23246 707 aaKnown RBP eCLIP7.13□□□□□ -1.27
SCN1A-203ENST00000409050 SMC1AQ14683 1233 aaKnown RBP7.13□□□□□ -1.27
SCN1A-203ENST00000409050 SPA17Q15506 151 aa7.13□□□□□ -1.27
SCN1A-203ENST00000409050 FKBP15Q5T1M5 1219 aa7.13□□□□□ -1.27
SCN1A-203ENST00000409050 TSG101Q99816 390 aa7.13□□□□□ -1.27
SCN1A-203ENST00000409050 KIF5CO60282 957 aa7.13□□□□□ -1.27
SCN1A-203ENST00000409050 PANK1Q8TE04 598 aa7.13□□□□□ -1.27
SCN1A-203ENST00000409050 PDCL3Q9H2J4 239 aa7.13□□□□□ -1.27
SCN1A-203ENST00000409050 POGZQ7Z3K3 1410 aa7.13□□□□□ -1.27
SCN1A-203ENST00000409050 FAM114A1Q8IWE2 563 aa7.13□□□□□ -1.27
SCN1A-203ENST00000409050 KIF1BPQ96EK5 621 aa7.13□□□□□ -1.27
SCN1A-203ENST00000409050 ANKRD18BA2A2Z9 1011 aa7.13□□□□□ -1.27
SCN1A-203ENST00000409050 TNIP1Q15025 636 aa7.13□□□□□ -1.27
SCN1A-203ENST00000409050 IFI16Q16666 785 aaKnown RBP7.13□□□□□ -1.27
SCN1A-203ENST00000409050 OSCARQ8IYS5 282 aa7.13□□□□□ -1.27
SCN1A-203ENST00000409050 EHMT1Q9H9B1 1298 aa7.13□□□□□ -1.27
SCN1A-203ENST00000409050 HMGB1P1B2RPK0 211 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-203ENST00000409050 EXOSC9Q06265 439 aaKnown RBP7.12□□□□□ -1.27
SCN1A-203ENST00000409050 PPM1EQ8WY54 764 aa7.12□□□□□ -1.27
SCN1A-203ENST00000409050 BCL11BQ9C0K0 894 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-203ENST00000409050 PAXBP1Q9Y5B6 917 aa7.12□□□□□ -1.27
SCN1A-203ENST00000409050 C9orf84Q5VXU9 1444 aa7.12□□□□□ -1.27
SCN1A-203ENST00000409050 IL16Q14005 1332 aa7.12□□□□□ -1.27
SCN1A-203ENST00000409050 UQCRHLA0A096LP55 91 aa7.12□□□□□ -1.27
SCN1A-203ENST00000409050 FIBPO43427 364 aa7.12□□□□□ -1.27
SCN1A-203ENST00000409050 UQCRHP07919 91 aa7.12□□□□□ -1.27
SCN1A-203ENST00000409050 CCDC178Q5BJE1 867 aa7.12□□□□□ -1.27
SCN1A-203ENST00000409050 PAFAH1B1P43034 410 aa7.12□□□□□ -1.27
SCN1A-203ENST00000409050 PTPN14Q15678 1187 aa7.12□□□□□ -1.27
SCN1A-203ENST00000409050 CCDC27Q2M243 656 aa7.12□□□□□ -1.27
SCN1A-203ENST00000409050 HDGFL1Q5TGJ6 251 aa7.12□□□□□ -1.27
SCN1A-203ENST00000409050 SRRTQ9BXP5 876 aaKnown RBP7.12□□□□□ -1.27
SCN1A-203ENST00000409050 RNF41Q9H4P4 317 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-203ENST00000409050 LUZP1Q86V48 1076 aa7.12□□□□□ -1.27
SCN1A-203ENST00000409050 FMNL3Q8IVF7 1028 aa7.12□□□□□ -1.27
SCN1A-203ENST00000409050 KCNH5Q8NCM2 988 aa7.12□□□□□ -1.27
SCN1A-203ENST00000409050 CCDC150Q8NCX0 1101 aa7.12□□□□□ -1.27
SCN1A-203ENST00000409050 PRKAR2BP31323 418 aa7.12□□□□□ -1.27
SCN1A-203ENST00000409050 FOXD4L6Q3SYB3 417 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-203ENST00000409050 FOXD4L3Q6VB84 417 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-203ENST00000409050 GIMAP7Q8NHV1 300 aa7.12□□□□□ -1.27
SCN1A-203ENST00000409050 IFT140Q96RY7 1462 aa7.11□□□□□ -1.27
SCN1A-203ENST00000409050 CCDC172P0C7W6 258 aa7.11□□□□□ -1.27
SCN1A-203ENST00000409050 HS1BP3Q53T59 392 aa7.11□□□□□ -1.27
SCN1A-203ENST00000409050 HSP90AB3PQ58FF7 597 aa7.11□□□□□ -1.27
SCN1A-203ENST00000409050 STXBP4Q6ZWJ1 553 aa7.11□□□□□ -1.27
SCN1A-203ENST00000409050 THEMISQ8N1K5 641 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-203ENST00000409050 UBAC1Q9BSL1 405 aa7.11□□□□□ -1.27
SCN1A-203ENST00000409050 CCDC12Q8WUD4 166 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-203ENST00000409050 HMG20BQ9P0W2 317 aa7.11□□□□□ -1.27
SCN1A-203ENST00000409050 CEP126Q9P2H0 1117 aa7.11□□□□□ -1.27
SCN1A-203ENST00000409050 SUPT6HQ7KZ85 1726 aaKnown RBP7.11□□□□□ -1.27
SCN1A-203ENST00000409050 CCDC171Q6TFL3 1326 aa7.11□□□□□ -1.27
SCN1A-203ENST00000409050 DYNC1I1O14576 645 aa7.11□□□□□ -1.27
SCN1A-203ENST00000409050 NLRP6P59044 892 aa7.11□□□□□ -1.27
SCN1A-203ENST00000409050 ENOX2Q16206 610 aaKnown RBP7.11□□□□□ -1.27
SCN1A-203ENST00000409050 KIAA1328Q86T90 577 aa7.11□□□□□ -1.27
SCN1A-203ENST00000409050 SLF2Q8IX21 1173 aa7.11□□□□□ -1.27
SCN1A-203ENST00000409050 RNF214Q8ND24 703 aa7.11□□□□□ -1.27
SCN1A-203ENST00000409050 PTPRCP08575 1304 aa7.11□□□□□ -1.27
SCN1A-203ENST00000409050 AMPD3Q01432 767 aa7.11□□□□□ -1.27
SCN1A-203ENST00000409050 SPECC1LQ69YQ0 1117 aa7.11□□□□□ -1.27
SCN1A-203ENST00000409050 BBXQ8WY36 941 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-203ENST00000409050 NFE2L2Q16236 605 aa7.11□□□□□ -1.27
SCN1A-203ENST00000409050 SPATA24Q86W54 205 aa7.11□□□□□ -1.27
SCN1A-203ENST00000409050 CNNM1Q9NRU3 951 aa7.11□□□□□ -1.27
SCN1A-203ENST00000409050 YEATS4O95619 227 aa7.1□□□□□ -1.27
SCN1A-203ENST00000409050 EIF5P55010 431 aaKnown RBP7.1□□□□□ -1.27
SCN1A-203ENST00000409050 CKAP4Q07065 602 aaKnown RBP7.1□□□□□ -1.27
SCN1A-203ENST00000409050 ALS2CR12Q96Q35 445 aa7.1□□□□□ -1.27
SCN1A-203ENST00000409050 PLVAPQ9BX97 442 aa7.1□□□□□ -1.27
SCN1A-203ENST00000409050 NOB1Q9ULX3 412 aaKnown RBP7.1□□□□□ -1.27
SCN1A-203ENST00000409050 A6NNZ2 444 aa7.1□□□□□ -1.27
SCN1A-203ENST00000409050 PRPHP41219 470 aa7.1□□□□□ -1.27
SCN1A-203ENST00000409050 SPAG1Q07617 926 aa7.1□□□□□ -1.27
SCN1A-203ENST00000409050 SLFN5Q08AF3 891 aa7.1□□□□□ -1.27
SCN1A-203ENST00000409050 CETN1Q12798 172 aa7.1□□□□□ -1.27
SCN1A-203ENST00000409050 BMS1Q14692 1282 aaKnown RBP7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms